genome.fa.s556.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  52  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11419251--11419279	12	2.3	13	94	5	51	41	0	20	37	1.53
11420233--11420447	60	3.7	57	82	7	263	34	13	6	45	1.70
11420233--11420448	57	3.7	57	83	4	270	34	13	6	44	1.70
11420484--11420533	10	5.0	10	78	9	57	82	2	4	12	0.90
11420484--11420542	21	2.9	22	82	12	72	79	1	5	13	0.97
11420573--11420612	4	9.8	4	83	5	53	77	2	0	20	0.88
11420580--11420628	17	3.0	16	81	18	57	79	6	0	14	0.91
11421548--11421713	16	11.2	15	68	20	66	66	4	1	27	1.20
11421907--11421940	7	4.7	7	85	7	50	0	0	11	88	0.52
11421948--11422312	41	9.1	41	82	10	459	34	22	18	23	1.96
11421948--11422312	83	4.5	83	83	9	463	34	22	18	23	1.96
11421948--11422312	124	3.0	122	85	9	477	34	22	18	23	1.96
11422168--11422230	33	1.9	33	93	3	110	36	15	26	20	1.93
11422207--11422312	38	2.7	39	89	4	160	35	22	16	25	1.94
11422085--11422309	112	2.0	114	90	3	357	36	20	19	23	1.95
11425802--11425889	35	2.5	35	94	1	160	42	4	20	32	1.72
11426870--11427092	119	1.9	120	98	0	430	33	14	6	45	1.71
11427138--11427206	27	2.7	25	74	17	61	76	1	5	15	1.04
11427222--11427264	13	3.2	13	87	9	52	81	2	0	16	0.79
11427218--11427250	17	1.9	17	93	0	57	81	3	0	15	0.80
11428082--11428127	18	2.5	19	82	13	60	63	6	8	21	1.46
11428182--11428335	12	12.4	12	72	20	65	65	3	1	28	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11428193--11428291	31	3.2	31	72	13	78	66	4	2	27	1.20
11428248--11428279	5	6.6	5	92	7	57	81	0	0	18	0.70
11428248--11428291	15	3.2	14	84	12	56	77	0	2	20	0.88
11430329--11430365	16	2.4	16	95	4	67	35	29	0	35	1.58
11430360--11430396	5	7.4	5	93	0	56	0	35	0	64	0.94
11431193--11431238	24	1.9	24	86	0	65	36	6	0	56	1.25
11431889--11432111	115	1.9	115	82	7	274	39	13	11	35	1.80
11432748--11432798	16	3.3	15	76	13	50	45	0	3	50	1.20
11433680--11433749	19	3.7	19	82	17	101	32	0	10	57	1.32
11433677--11433751	37	2.0	38	97	2	143	30	0	10	58	1.32
11433888--11433983	29	3.2	30	86	4	131	35	2	6	56	1.36
11433907--11433983	14	5.3	14	69	14	57	36	1	3	58	1.25
11435552--11435678	68	1.9	68	86	0	182	38	8	11	40	1.73
11436204--11436238	15	2.3	15	90	0	52	17	5	11	65	1.43
11436524--11436728	55	3.7	55	84	1	232	44	13	13	27	1.82
11440015--11440066	27	2.0	26	84	3	68	30	19	9	40	1.83
11440838--11440909	34	2.2	34	85	5	94	19	2	4	73	1.12
11442619--11442659	21	2.0	21	85	9	57	39	2	2	56	1.26
11444150--11444194	22	2.0	22	87	12	65	62	2	0	35	1.08
11449098--11449130	16	2.1	16	100	0	66	63	0	0	36	0.95
11449100--11449203	22	5.4	19	76	19	83	50	1	0	46	1.18
11449123--11449191	22	3.1	22	83	4	86	53	1	1	43	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11452262--11452311	26	1.9	26	88	8	75	18	0	8	74	1.06
11454164--11454209	3	15.3	3	88	0	56	30	26	2	41	1.68
11454175--11454242	21	3.2	21	91	0	109	33	16	1	48	1.55
11454175--11454236	15	4.1	15	80	0	61	33	16	1	48	1.56
11456379--11456640	55	5.0	54	79	12	223	34	16	13	35	1.88
11456382--11456653	49	5.3	49	81	10	228	34	16	13	34	1.89
11457596--11457684	26	3.4	25	74	10	65	8	7	5	77	1.12
11462731--11462784	3	18.0	3	88	0	81	29	1	3	64	1.21
11466226--11466275	15	3.3	15	80	0	55	36	8	2	54	1.42
11466221--11466281	12	4.8	12	73	11	59	34	9	1	54	1.44
11470039--11470065	13	2.1	13	100	0	54	55	7	7	29	1.55
11472510--11473243	304	2.4	303	84	3	920	35	12	15	36	1.86
11476637--11476884	80	3.1	79	86	4	354	42	25	9	22	1.84
11481114--11481162	24	2.0	26	84	8	66	32	4	0	63	1.13
11489329--11489659	134	2.5	134	79	5	319	41	18	12	27	1.86
11490022--11490063	14	2.9	14	86	10	50	16	11	0	71	1.14
11490024--11490072	21	2.4	21	77	16	57	18	8	0	73	1.07
11490060--11490098	15	2.5	15	87	4	51	25	0	5	69	1.09
11492727--11493143	161	2.6	164	79	5	432	39	17	12	30	1.87
11493795--11493848	21	2.5	22	75	9	56	27	16	27	27	1.97
11494455--11494952	167	3.0	164	88	6	688	54	5	5	33	1.48
11495312--11495368	18	3.0	20	78	14	68	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11494760--11495517	251	3.0	250	83	7	862	52	5	6	35	1.50
11495402--11495435	18	2.0	17	88	11	52	64	0	8	26	1.22
11495521--11495569	21	2.3	21	82	0	53	38	0	2	59	1.09
11495694--11495740	23	2.0	23	100	0	94	48	12	8	29	1.71
11500339--11500379	20	2.0	22	90	9	68	24	19	2	53	1.57
11504916--11504979	23	2.8	23	72	9	58	59	7	10	21	1.56
11506029--11506086	20	2.8	20	73	21	57	39	17	13	29	1.88
11506620--11506677	17	3.4	17	79	9	64	48	13	13	24	1.79
11508169--11508196	2	14.0	2	100	0	56	50	0	0	50	1.00
11508298--11509385	416	2.6	418	80	8	1200	41	15	14	28	1.86
11515714--11515750	19	1.9	19	94	0	65	45	21	2	29	1.65
11515770--11515811	10	4.0	11	78	12	52	61	7	0	30	1.22
11515771--11515815	21	2.1	21	88	8	65	62	6	0	31	1.21
11516366--11516436	3	23.7	3	97	0	133	66	1	0	32	1.01
11523649--11523705	28	2.0	28	100	0	114	36	10	17	35	1.84
11529206--11529251	3	15.3	3	90	0	56	58	0	0	41	0.98
11529279--11529340	26	2.4	26	83	5	72	32	25	22	19	1.97
11531593--11531641	25	2.0	25	91	0	80	20	6	16	57	1.60
11532666--11532889	112	2.0	112	97	0	421	24	10	12	53	1.69
11546198--11546249	21	2.4	21	96	3	95	50	0	0	50	1.00
11546235--11546278	14	3.2	14	87	3	63	65	0	0	34	0.93
11548010--11548053	8	5.2	8	86	8	61	27	0	2	70	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11548655--11548696	17	2.4	18	84	7	61	59	9	4	26	1.48
11550093--11550125	15	2.3	15	89	5	50	60	6	0	33	1.21
11550419--11550465	19	2.5	19	86	6	60	4	19	2	74	1.09
11550432--11550476	22	2.0	22	87	8	65	0	22	2	75	0.91
11556199--11556264	31	2.1	31	81	10	73	63	12	0	24	1.28
11558199--11558242	23	1.9	23	86	9	63	50	22	4	22	1.67
11558951--11558991	7	6.3	7	86	8	52	0	24	0	75	0.80
11563177--11563212	12	3.0	12	83	0	54	44	8	8	38	1.65
11564199--11564306	45	2.3	43	76	14	110	73	6	0	20	1.05
11564964--11565009	24	2.0	22	88	12	67	73	8	13	4	1.21
11566385--11566429	14	3.1	15	78	18	58	73	0	2	24	0.95
11566388--11566428	21	2.0	21	85	9	57	75	0	2	21	0.92
11570011--11570063	3	17.7	3	92	0	88	69	1	0	28	0.99
11577448--11577539	9	10.9	8	74	15	60	77	1	10	10	1.06
11577472--11577528	26	2.2	26	90	6	89	73	1	10	14	1.17
11577447--11577535	35	2.6	31	79	17	97	76	1	10	12	1.08
11578654--11578843	35	5.3	34	68	13	87	24	21	10	44	1.83
11579213--11579377	34	4.8	34	79	8	154	17	20	13	47	1.82
11579581--11579749	35	4.8	34	72	10	108	21	21	9	47	1.78
11580235--11580276	15	2.8	15	85	7	50	73	2	0	23	0.94
11583098--11583134	15	2.2	17	86	13	51	51	2	0	45	1.15
11584422--11584573	60	2.5	62	76	5	148	33	19	11	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11584464--11584945	191	2.6	190	79	7	489	33	16	12	37	1.86
11584873--11585027	81	1.9	81	86	1	220	39	14	10	35	1.81
11584954--11585224	62	4.3	62	74	7	197	32	15	13	38	1.86
11589080--11589136	7	8.0	7	78	3	51	17	1	5	75	1.07
11589117--11589261	19	7.0	21	68	20	62	31	4	2	61	1.29
11589142--11589262	34	3.4	34	69	10	82	33	4	2	59	1.30
11589218--11589262	17	2.6	17	76	13	56	28	2	4	64	1.25
11590014--11590063	22	2.3	22	86	10	68	28	0	0	72	0.86
11590094--11590129	16	2.2	16	95	0	63	19	0	0	80	0.71
11590266--11590422	55	2.9	55	79	8	203	44	8	10	36	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130