genome.fa.s556.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  14  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3872789--3872891	54	1.9	54	88	7	156	46	6	1	44	1.41
3873553--3873595	15	3.1	13	78	15	50	41	4	0	53	1.21
3873553--3873612	28	2.1	29	84	9	79	45	3	0	51	1.17
3873576--3873648	27	2.7	28	74	6	69	45	1	0	53	1.09
3875590--3875619	15	2.1	15	93	6	53	46	3	6	43	1.46
3876404--3876547	73	2.0	73	98	1	281	12	16	6	63	1.49
3883575--3883629	3	18.3	3	92	0	92	65	3	0	30	1.10
3883884--3883934	21	2.5	21	96	3	95	49	0	0	50	1.00
3883903--3883972	30	2.4	30	80	2	79	54	1	0	44	1.09
3883924--3883972	8	6.1	8	75	0	53	57	2	0	40	1.10
3885898--3885932	10	3.4	10	84	7	52	34	2	0	62	1.10
3885996--3886043	23	2.1	23	84	7	62	54	6	2	37	1.38
3899026--3899246	110	2.0	110	97	0	415	25	17	19	37	1.94
3899258--3899453	99	2.0	99	93	0	338	45	14	13	26	1.82
3904353--3904406	26	2.1	25	86	3	72	61	0	0	38	0.96
3916868--3916919	22	2.5	21	81	15	63	50	1	0	48	1.12
3917180--3917224	22	2.0	22	82	0	54	71	4	13	11	1.29
3917461--3917513	25	2.2	24	77	19	56	33	0	1	64	1.05
3917470--3917517	16	3.0	15	80	14	60	31	0	0	68	0.90
3918075--3918112	12	3.2	12	82	14	51	36	0	0	63	0.95
3918075--3918125	24	2.1	24	85	0	66	41	0	0	58	0.98
3918100--3918155	28	2.0	28	85	3	76	46	1	0	51	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3918471--3918528	11	4.8	11	74	17	53	51	0	3	44	1.18
3918563--3918598	19	1.9	18	88	5	54	36	0	0	63	0.94
3918616--3918695	13	6.5	13	69	15	55	53	0	0	46	1.00
3918593--3918674	34	2.4	34	80	10	96	57	0	0	42	0.98
3918601--3918686	33	2.5	34	83	7	104	56	0	0	43	0.99
3918671--3918700	15	2.0	15	93	0	51	56	0	0	43	0.99
3923194--3923284	46	2.0	46	89	4	139	30	9	21	37	1.86
3934343--3934409	32	2.1	33	94	2	118	31	10	4	53	1.55
3934343--3934425	32	2.5	32	86	7	103	34	12	3	49	1.57
3935223--3935652	220	2.0	215	95	2	770	41	24	10	23	1.85
3936668--3936692	7	3.6	7	100	0	50	0	12	0	88	0.53
3937138--3937220	42	2.0	43	97	2	159	54	4	2	38	1.35
3948368--3948823	227	2.0	227	87	2	646	41	19	12	25	1.87
3948846--3948914	33	2.1	34	94	2	122	37	14	18	28	1.91
3950518--3950544	7	3.9	7	100	0	54	55	0	29	14	1.40
3957997--3958049	15	3.0	19	63	21	51	45	9	3	41	1.54
3971500--3971579	41	2.0	41	85	5	108	58	1	1	38	1.14
3971648--3971693	12	4.0	12	80	8	51	58	0	0	41	0.98
3974077--3974101	12	2.1	12	100	0	50	32	16	0	52	1.44
3981450--3981500	25	2.0	25	92	0	84	37	19	13	29	1.90
3985243--3985270	2	14.0	2	100	0	56	50	0	0	50	1.00
3988766--3988813	23	2.1	22	81	11	53	29	6	2	62	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3991106--3991170	33	1.9	34	87	3	96	55	4	1	38	1.30
4002142--4002166	7	3.6	7	100	0	50	48	0	0	52	1.00
4013160--4013198	16	2.4	17	86	4	53	79	2	0	17	0.84
4013167--4013209	18	2.4	18	84	3	52	76	0	2	20	0.89
4015937--4015989	27	2.0	27	82	7	65	47	0	7	45	1.31
4016889--4016929	14	3.0	14	82	3	57	31	0	2	65	1.05
4017868--4018000	68	2.0	68	96	0	248	27	13	15	44	1.83
4025656--4025705	24	2.0	24	88	7	73	54	2	0	44	1.11
4025664--4025705	6	6.8	6	89	5	66	52	0	0	47	1.00
4036200--4036234	2	17.5	2	100	0	70	51	0	48	0	1.00
4043291--4043395	50	2.1	50	89	5	160	40	17	14	27	1.88
4046253--4046308	28	2.0	28	86	6	78	39	12	32	16	1.85
4047603--4047628	2	13.0	2	100	0	52	50	0	0	50	1.00
4051456--4051496	2	20.5	2	89	0	64	48	4	0	46	1.23
4052543--4052614	20	3.7	20	67	22	55	44	0	1	54	1.08
4068114--4068148	2	17.5	2	93	0	61	48	2	0	48	1.16
4068594--4068632	20	2.0	20	84	0	51	53	2	2	41	1.28
4069367--4069391	4	6.2	4	100	0	50	24	0	0	76	0.80
4072945--4072979	17	2.1	17	88	0	52	62	0	2	34	1.10
4073139--4073172	10	3.3	10	91	4	50	26	0	0	73	0.83
4074628--4074690	27	2.2	29	86	5	85	30	1	1	66	1.10
4089071--4089096	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4091848--4091899	26	2.1	26	82	7	63	53	3	0	42	1.19
4092224--4092297	37	2.0	37	100	0	148	18	32	21	27	1.97
4092896--4093091	103	1.9	103	92	2	331	36	12	7	43	1.70
4094066--4094109	16	2.6	16	82	7	52	61	2	0	36	1.09
4094330--4094363	7	4.9	7	100	0	68	58	0	29	11	1.33
4096641--4097063	224	1.9	224	91	1	686	48	14	10	26	1.75
4097162--4097199	2	19.0	2	100	0	76	50	0	0	50	1.00
4101610--4101661	21	2.7	18	70	16	50	63	0	0	36	0.95
4101610--4101665	18	2.8	21	73	15	64	60	0	0	39	0.97
4101812--4101872	27	2.3	26	77	8	68	47	0	0	52	1.00
4105677--4105875	111	1.8	111	84	5	278	43	9	3	43	1.54
4106103--4106240	61	2.3	59	82	7	154	42	16	2	39	1.61
4109172--4109211	4	10.0	4	100	0	80	25	0	25	50	1.50
4119712--4119750	20	2.0	20	85	10	53	46	0	7	46	1.31
4123872--4124197	160	2.0	160	93	0	571	35	19	7	36	1.81
4125012--4125044	3	11.0	3	100	0	66	66	0	0	33	0.92
4126337--4126384	20	2.3	21	92	7	80	56	0	0	43	0.99
4126331--4126422	22	4.0	22	74	25	68	57	0	0	42	0.98
4126364--4126422	25	2.5	24	78	13	68	57	0	0	42	0.98
4130344--4130377	13	2.4	15	85	14	54	73	5	8	11	1.24
4137488--4137517	15	2.0	15	93	0	51	60	0	10	30	1.30
4152151--4152213	29	2.1	29	85	8	83	36	1	1	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4152248--4152327	30	2.7	30	86	5	117	51	0	11	37	1.38
4152442--4152481	21	1.9	21	89	0	62	77	0	17	5	0.94
4154228--4154269	19	2.2	19	91	0	66	21	4	16	57	1.58
4154228--4154279	19	2.7	19	85	5	52	19	9	13	57	1.63
4157105--4157272	87	1.9	87	87	2	248	39	15	17	27	1.90
4158869--4158999	66	2.0	63	91	4	208	48	5	3	43	1.41
4162719--4162797	31	2.6	31	78	7	83	45	25	5	24	1.73
4162809--4162890	8	10.6	8	70	15	57	50	24	1	24	1.57
4162810--4162890	23	3.5	23	67	14	60	50	24	1	23	1.56
4162784--4162913	30	4.3	29	72	13	86	50	24	0	23	1.54
4162900--4162987	45	2.0	45	90	0	140	46	25	2	26	1.64
4162924--4163019	23	4.2	23	68	7	70	47	25	2	25	1.62
4163006--4163042	17	2.1	18	90	5	58	64	13	0	21	1.27
4163022--4163099	14	5.3	14	75	7	66	56	16	0	26	1.41
4163022--4163099	29	2.7	29	74	6	77	56	16	0	26	1.41
4162802--4163177	15	24.8	15	67	19	117	50	23	1	23	1.58
4163089--4163156	24	2.9	23	71	6	64	48	30	2	17	1.62
4163082--4163203	63	2.0	62	81	4	147	50	26	2	20	1.60
4166041--4166079	19	2.1	19	85	9	53	51	0	7	41	1.31
4166118--4166179	22	2.8	22	80	0	70	48	4	12	33	1.63
4166163--4166255	22	4.2	22	65	13	57	50	5	5	38	1.48
4166348--4166398	11	4.6	11	80	0	57	56	1	3	37	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4166338--4166400	22	2.9	22	85	0	72	53	4	4	36	1.43
4166350--4166809	44	10.7	43	70	9	143	48	4	10	35	1.59
4166443--4166807	22	16.8	22	68	11	142	48	4	11	35	1.59
4166987--4167133	44	3.4	44	79	4	129	46	8	6	37	1.62
4166910--4167055	22	6.8	22	69	14	90	48	9	6	35	1.61
4166987--4167122	22	6.2	22	73	7	80	48	8	6	36	1.59
4167078--4167141	22	2.9	22	76	4	67	45	10	7	35	1.68
4167420--4167467	7	6.6	7	76	9	51	47	4	2	45	1.33
4167409--4167495	22	4.0	22	84	0	93	47	3	6	42	1.47
4167409--4167495	44	2.0	44	83	0	111	47	3	6	42	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130