genome.fa.s556.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  29  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7490359--7490403	5	9.6	5	80	9	51	15	2	0	82	0.77
7490359--7490406	9	5.2	9	80	12	53	14	2	0	83	0.74
7490359--7490403	23	1.9	24	86	13	67	15	2	0	82	0.77
7498078--7498108	15	2.1	15	93	0	53	51	6	22	19	1.69
7501258--7501526	58	4.6	58	84	5	307	37	13	6	42	1.70
7501542--7501589	21	2.4	19	76	13	51	70	0	2	27	0.98
7501610--7501657	3	14.7	3	91	8	60	70	0	0	29	0.87
7501601--7501657	15	3.4	16	81	18	71	68	1	0	29	1.00
7501606--7501658	22	2.6	21	80	19	60	71	0	0	28	0.86
7501606--7501663	18	3.0	18	76	16	62	72	0	0	27	0.85
7502494--7502595	3	29.7	3	72	18	51	62	1	4	30	1.27
7502463--7502534	7	10.3	7	79	19	55	59	0	8	31	1.27
7502454--7502614	42	3.8	42	76	14	125	62	1	5	31	1.26
7502563--7502608	4	11.5	4	78	17	51	69	0	4	26	1.07
7502484--7502625	53	2.8	52	70	20	95	64	1	4	29	1.20
7502581--7502640	15	3.9	15	81	18	63	75	0	0	25	0.81
7502576--7502639	19	3.3	19	81	16	62	73	0	1	25	0.92
7502594--7502656	5	12.8	5	82	11	60	76	3	0	20	0.93
7502598--7502656	26	2.4	25	81	13	68	76	3	0	20	0.93
7505123--7505187	29	2.2	29	86	5	87	52	1	0	46	1.10
7505735--7505771	17	2.2	17	90	0	56	29	2	8	59	1.40
7505724--7505783	16	3.7	16	77	4	57	36	3	6	53	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7506110--7506261	29	5.2	29	73	4	90	53	16	9	19	1.70
7506110--7506243	58	2.3	58	75	10	137	53	14	10	20	1.70
7506857--7506886	11	2.7	11	94	0	51	33	0	0	66	0.92
7515924--7515961	18	2.1	18	95	0	67	63	2	10	23	1.39
7516076--7516117	21	2.0	20	86	4	57	45	0	0	54	0.99
7518268--7518419	62	2.5	62	77	8	139	39	14	12	33	1.84
7520309--7520353	21	2.1	21	84	8	56	66	6	0	26	1.16
7520853--7520897	19	2.4	19	88	0	72	46	6	11	35	1.66
7523830--7523893	31	2.1	31	100	0	128	37	12	9	40	1.75
7527044--7527489	222	2.0	220	91	1	723	36	8	13	41	1.75
7528072--7528106	15	2.3	15	90	0	52	17	5	11	65	1.43
7528239--7528285	24	2.0	24	87	8	69	57	0	0	42	0.98
7530893--7530917	7	3.6	7	100	0	50	28	28	0	44	1.55
7533473--7533515	22	1.9	23	85	4	61	53	2	2	41	1.26
7540431--7540469	17	2.2	18	95	4	71	25	7	10	56	1.59
7541065--7541110	19	2.4	19	85	3	56	28	2	0	69	1.00
7541226--7541258	9	3.9	9	88	11	52	69	0	9	21	1.15
7543016--7543055	21	1.9	21	84	0	53	20	5	5	70	1.26
7543547--7543717	84	2.0	84	84	2	218	39	18	13	29	1.88
7545068--7545104	16	2.3	16	95	0	65	29	18	5	45	1.72
7544995--7545274	100	2.8	102	83	5	343	36	8	10	45	1.69
7546568--7546808	84	2.9	83	81	1	230	37	14	14	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7546657--7546837	84	2.2	84	84	2	229	35	14	17	33	1.90
7546677--7546856	84	2.1	84	83	4	220	36	15	17	31	1.91
7547082--7547120	18	2.0	20	90	9	64	48	5	5	41	1.47
7550195--7550261	3	21.7	3	91	8	100	68	0	0	31	0.90
7550917--7551223	102	3.0	102	84	6	401	37	7	9	45	1.63
7552041--7552081	18	2.2	19	83	12	50	73	4	7	14	1.22
7552345--7552382	19	2.0	20	89	5	60	5	15	5	73	1.19
7552462--7552494	15	2.2	16	89	10	52	3	6	6	84	0.84
7554456--7554486	13	2.3	14	94	5	55	6	9	3	80	0.99
7557405--7557477	19	3.9	19	76	16	80	75	9	1	13	1.11
7558329--7558636	41	7.4	41	82	8	169	43	19	11	24	1.84
7558363--7558668	41	7.3	42	83	5	300	45	19	11	23	1.83
7559663--7559709	14	3.4	14	83	16	62	10	14	0	74	1.07
7559646--7559710	7	8.8	8	80	14	52	10	10	0	78	0.97
7570511--7570565	25	2.2	25	80	9	58	40	5	7	47	1.54
7571848--7571909	29	2.2	29	91	2	99	43	8	19	29	1.79
7572887--7572915	3	9.7	3	100	0	58	65	0	0	34	0.93
7573796--7573868	20	3.4	21	78	14	62	19	10	1	68	1.27
7574016--7574049	3	11.7	3	93	6	61	35	0	0	64	0.94
7574180--7574223	9	5.0	9	91	5	72	63	0	0	36	0.95
7574180--7574223	17	2.5	18	92	3	72	63	0	0	36	0.95
7576493--7576522	6	5.0	6	100	0	60	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7576485--7576525	13	3.2	13	86	6	57	39	0	0	60	0.96
7577588--7577618	16	1.9	16	93	0	53	61	3	0	35	1.12
7582724--7582762	20	2.0	20	85	10	53	35	0	5	58	1.20
7589142--7589174	16	2.1	16	88	11	50	45	3	9	42	1.51
7589817--7589850	2	17.0	2	100	0	68	50	0	0	50	1.00
7589854--7589893	2	20.0	2	100	0	80	50	0	50	0	1.00
7592683--7592709	3	9.0	3	100	0	54	66	0	0	33	0.92
7592708--7592980	3	91.0	3	85	0	213	21	1	12	64	1.33
7593361--7593393	18	1.9	17	88	11	50	75	6	6	12	1.16
7603176--7603425	36	6.9	35	76	10	168	27	14	17	40	1.89
7603176--7603372	108	1.8	108	83	6	265	26	15	18	40	1.90
7603141--7603338	72	2.8	72	78	1	211	28	15	17	38	1.90
7603207--7603413	72	2.9	72	82	4	204	27	15	17	40	1.89
7603176--7603408	108	2.2	108	81	7	260	27	15	17	39	1.89
7603523--7603605	34	2.4	35	82	11	91	24	15	19	40	1.90
7609470--7609506	3	12.3	3	94	0	65	35	2	0	62	1.10
7609970--7610012	20	2.1	21	86	4	61	46	2	18	32	1.62
7610369--7610412	19	2.3	19	84	0	52	13	6	4	75	1.17
7610703--7610744	3	13.7	3	95	5	75	30	2	0	66	1.04
7610861--7610908	19	2.5	20	83	12	64	56	4	2	37	1.30
7614578--7614603	2	13.0	2	100	0	52	50	0	0	50	1.00
7615971--7616018	19	2.5	20	82	3	53	16	6	2	75	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7617368--7617413	24	1.9	24	95	0	83	28	28	19	23	1.98
7617525--7617613	39	2.3	40	86	5	137	48	10	10	31	1.70
7623139--7623178	8	5.1	8	90	3	64	15	0	0	85	0.61
7623139--7623178	16	2.6	15	92	7	71	15	0	0	85	0.61
7623249--7623313	26	2.5	25	80	9	69	41	7	4	46	1.53
7623249--7623316	25	2.7	26	80	15	72	42	7	5	44	1.56
7623714--7623743	15	2.1	15	93	6	53	0	43	0	56	0.99
7623892--7623958	31	2.2	31	88	0	98	50	16	10	22	1.75
7624294--7624343	8	6.2	8	90	4	75	24	2	0	74	0.93
7624506--7625062	44	13.1	42	75	9	393	47	17	11	23	1.80
7624515--7625102	41	13.9	40	72	12	184	46	17	11	23	1.82
7624731--7625062	125	2.6	128	78	9	340	47	16	11	24	1.80
7624730--7624974	81	2.9	79	77	11	233	46	16	12	24	1.82
7624495--7625062	85	6.6	84	73	14	326	47	17	11	23	1.80
7624827--7625103	129	2.2	121	79	9	297	46	16	12	24	1.82
7625401--7625459	21	2.8	21	78	17	68	37	16	3	42	1.66
7625550--7625601	22	2.4	22	90	0	77	42	11	7	38	1.70
7626717--7626754	6	6.3	6	82	11	51	0	15	2	81	0.80
7626726--7626766	18	2.3	18	86	0	55	2	14	0	82	0.76
7627133--7627172	8	5.0	8	82	11	55	0	10	2	87	0.63
7627128--7627172	12	3.7	12	80	14	56	0	11	2	86	0.65
7627128--7627168	14	2.9	14	89	7	57	0	9	2	87	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7627537--7627570	16	2.2	15	89	5	50	14	20	23	41	1.89
7627607--7627639	3	11.3	3	87	6	50	30	0	0	69	0.88
7627649--7627681	17	2.0	17	88	5	50	0	18	6	75	1.00
7628532--7628591	5	11.8	5	84	8	77	18	1	1	78	0.92
7638766--7638816	18	2.5	20	82	14	61	82	1	1	13	0.85
7639308--7639333	9	2.9	9	100	0	52	92	0	7	0	0.39
7639706--7640040	117	2.8	118	78	4	345	20	19	13	46	1.83
7639706--7640097	118	3.3	118	76	9	356	20	19	13	46	1.83
7639940--7640172	118	2.0	116	80	9	258	22	19	11	46	1.81
7640381--7640412	10	3.4	10	83	16	50	18	0	0	81	0.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130