genome.fa.s556.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  124  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24917784--24917823	2	20.5	2	94	5	73	52	0	0	47	1.00
24921822--24921869	3	16.0	3	86	0	51	66	10	0	22	1.22
24921819--24921865	15	3.1	15	93	0	76	68	12	0	19	1.21
24931128--24931154	12	2.2	12	100	0	54	62	7	7	22	1.46
24934663--24934706	22	2.0	22	100	0	88	27	18	22	31	1.97
24947775--24948533	380	2.0	380	99	0	1500	33	21	12	32	1.91
24949525--24949569	22	2.0	22	91	0	72	40	0	2	57	1.11
24949880--24949921	22	1.9	22	90	0	66	64	7	0	28	1.20
24950656--24950731	31	2.5	31	80	10	84	52	2	0	44	1.14
24967423--24967472	13	3.7	13	76	10	55	68	2	2	28	1.12
24967446--24967478	14	2.3	15	89	5	50	75	3	0	21	0.93
24967460--24967525	35	1.9	35	81	6	82	60	0	0	39	0.97
24982264--24982300	17	2.1	18	90	5	58	70	5	10	13	1.32
24983569--24983647	36	2.2	36	83	2	104	46	8	2	41	1.48
24986912--24986971	14	4.3	14	76	12	52	40	0	1	58	1.08
24986955--24987008	22	2.5	20	88	11	72	50	0	0	50	1.00
24993457--24993498	17	2.5	17	96	0	75	23	19	23	33	1.97
25004484--25004514	16	1.9	16	93	0	53	64	0	0	35	0.94
25007637--25008352	357	2.0	357	99	0	1423	37	12	17	33	1.86
25012417--25012449	2	16.5	2	100	0	66	48	0	0	51	1.00
25012476--25012504	5	5.8	5	100	0	58	62	0	37	0	0.96
25022372--25022408	15	2.5	15	90	0	56	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25022385--25022409	11	2.3	11	100	0	50	28	0	0	72	0.86
25022498--25022549	15	3.5	15	84	5	70	34	0	1	63	1.06
25022508--25022551	14	3.0	15	87	12	65	38	0	0	61	0.96
25022510--25022556	15	2.8	18	75	24	57	36	0	0	63	0.94
25022998--25023026	14	2.1	14	100	0	58	31	0	0	68	0.89
25031430--25031477	24	2.0	23	84	4	60	47	10	14	27	1.76
25041021--25041099	23	3.3	23	75	15	79	54	0	3	41	1.18
25053052--25053274	90	2.5	90	87	0	311	42	8	8	40	1.66
25058615--25058655	19	2.2	19	100	0	82	24	31	9	34	1.88
25061867--25061946	32	2.4	32	83	8	90	40	10	3	46	1.55
25066164--25066232	28	2.4	29	80	2	77	31	7	1	59	1.33
25068818--25068864	21	2.3	21	82	10	53	46	0	2	51	1.13
25068847--25068901	20	2.7	20	83	11	58	54	0	0	45	0.99
25068893--25068925	14	2.3	15	94	5	59	63	0	0	36	0.95
25069248--25069297	23	2.1	24	88	3	75	44	8	2	46	1.44
25069768--25069819	21	2.5	21	81	12	70	34	0	5	59	1.21
25075621--25075668	20	2.5	19	83	10	53	72	4	2	20	1.11
25075632--25075690	20	2.7	22	87	10	77	66	1	3	28	1.18
25091006--25091033	2	14.0	2	100	0	56	50	0	0	50	1.00
25092331--25092385	17	3.4	17	80	10	78	54	3	3	38	1.36
25092341--25092392	15	3.3	15	76	10	59	57	1	1	38	1.21
25092327--25092392	32	2.1	31	97	2	123	59	3	3	34	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25104842--25104871	1	30.0	1	100	0	60	0	0	0	100	0.00
25107303--25107331	2	14.5	2	100	0	58	48	0	0	51	1.00
25109654--25109679	2	13.0	2	100	0	52	0	50	0	50	1.00
25110916--25110945	3	10.0	3	100	0	60	66	0	0	33	0.92
25113167--25113212	22	2.1	22	88	8	67	67	4	0	28	1.10
25119210--25119253	22	2.0	23	86	4	63	81	4	2	11	0.92
25120935--25120982	21	2.2	21	82	10	53	10	10	6	72	1.26
25120935--25120985	23	2.4	21	75	21	52	11	9	5	72	1.27
25127073--25127111	19	2.0	19	85	5	51	58	0	0	41	0.98
25127108--25127184	27	2.8	28	74	16	72	58	2	2	36	1.26
25133499--25133533	2	17.5	2	100	0	70	51	0	0	48	1.00
25134141--25134306	84	2.0	83	95	1	296	38	19	12	28	1.89
25137773--25137829	30	1.9	30	85	0	78	45	0	1	52	1.11
25137802--25137852	21	2.5	21	96	3	95	50	0	0	49	1.00
25138098--25138145	12	3.8	13	78	13	55	58	0	0	41	0.98
25138098--25138150	26	2.1	25	89	10	81	58	0	0	41	0.98
25138098--25138143	13	3.5	13	80	11	58	56	0	0	43	0.99
25138345--25138386	20	2.1	20	86	8	59	30	2	0	66	1.04
25141765--25141836	37	1.9	38	81	13	87	50	4	6	38	1.49
25144866--25144903	2	19.0	2	88	0	58	50	0	5	44	1.24
25145812--25145940	51	2.5	50	75	9	125	62	1	1	34	1.14
25149447--25149490	22	2.1	21	84	16	56	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25151453--25152012	277	2.0	277	99	0	1111	26	19	16	37	1.93
25153628--25153658	2	15.5	2	100	0	62	51	0	0	48	1.00
25154367--25154407	21	2.0	21	90	9	66	24	14	19	41	1.89
25154840--25154874	2	17.5	2	100	0	70	0	48	0	51	1.00
25154874--25154915	2	21.0	2	100	0	84	50	0	0	50	1.00
25165231--25165257	2	13.5	2	100	0	54	51	0	0	48	1.00
25167232--25167263	8	3.9	8	92	8	55	15	0	0	84	0.63
25167623--25167664	11	3.6	11	77	22	50	66	0	0	33	0.92
25167625--25167673	24	2.0	24	92	0	80	65	0	2	32	1.04
25167728--25167792	33	2.0	33	82	11	80	47	1	1	49	1.20
25168956--25169024	27	2.4	29	79	13	72	39	0	2	57	1.13
25169009--25169070	24	2.5	24	82	7	72	40	3	0	56	1.15
25178504--25178544	20	2.0	20	85	0	55	82	7	4	4	0.93
25181815--25181847	15	2.3	14	94	5	57	63	3	0	33	1.10
25190787--25190905	62	1.9	62	89	0	184	40	4	12	42	1.62
25191823--25191864	10	4.4	10	80	19	54	30	0	0	69	0.89
25191823--25191864	20	2.2	19	91	8	68	30	0	0	69	0.89
25191880--25191946	33	2.0	33	82	5	82	53	4	0	41	1.21
25192325--25192363	17	2.4	16	86	4	51	61	0	0	38	0.96
25192333--25192365	16	2.0	17	94	5	59	57	0	0	42	0.98
25192476--25192510	18	1.9	18	88	0	52	40	8	2	48	1.49
25192784--25192921	63	2.2	65	85	7	201	52	1	4	42	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25192894--25192940	19	2.5	19	79	6	51	40	4	0	55	1.19
25194743--25194768	2	13.0	2	100	0	52	50	0	0	50	1.00
25195968--25196015	23	2.1	23	84	0	60	52	6	4	37	1.46
25198565--25198603	12	3.2	12	88	0	60	58	0	0	41	0.98
25199385--25199409	13	1.9	13	100	0	50	72	0	0	28	0.86
25199441--25199474	5	7.0	5	90	6	52	55	0	2	41	1.15
25199442--25199471	14	2.1	14	93	0	51	56	0	3	40	1.16
25199517--25199550	16	2.1	17	88	5	52	50	0	0	50	1.00
25200032--25200081	6	8.5	6	84	4	57	48	0	0	52	1.00
25200104--25200164	23	2.6	24	85	12	83	45	0	0	54	1.00
25200240--25200285	19	2.6	17	82	6	56	30	2	0	67	1.03
25203242--25203275	15	2.2	16	89	5	52	50	0	5	44	1.26
25216192--25216238	23	2.0	23	100	0	94	53	25	8	12	1.67
25216345--25216500	52	3.0	51	83	3	186	26	23	8	41	1.83
25216526--25216568	22	2.0	22	95	0	77	48	30	0	20	1.50
25231414--25231488	25	3.1	23	80	12	80	56	2	0	41	1.13
25231438--25231492	13	4.4	13	75	9	51	54	1	0	43	1.10
25231414--25231488	24	3.1	25	76	16	79	56	2	0	41	1.13
25235528--25235573	21	2.1	22	88	4	67	63	0	2	34	1.07
25236014--25236049	2	17.5	2	88	5	54	2	47	2	47	1.31
25236823--25236852	15	2.0	15	100	0	60	20	13	26	40	1.89
25246671--25246702	17	1.9	17	93	6	57	81	0	0	18	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25248245--25248269	12	2.1	12	100	0	50	64	0	0	36	0.94
25248423--25248454	12	2.6	13	85	14	50	31	0	0	68	0.90
25249054--25249106	27	2.0	26	85	3	70	52	3	0	43	1.19
25249469--25249494	13	2.0	13	100	0	52	92	0	7	0	0.39
25252129--25252341	105	2.0	105	91	3	349	45	10	9	33	1.72
25252788--25252843	23	2.3	24	82	14	71	48	1	0	50	1.11
25253215--25253243	15	2.0	15	93	6	51	62	0	0	37	0.96
25254700--25254734	17	2.1	17	88	0	52	25	14	14	45	1.82
25254890--25254923	16	2.1	17	94	5	61	29	11	17	41	1.85
25254985--25255065	18	4.6	18	75	9	76	33	12	11	43	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130