genome.fa.s556.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  27  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6916216--6916297	14	5.7	14	77	11	94	17	0	29	53	1.44
6916168--6916255	16	5.7	16	70	14	60	20	3	30	45	1.67
6916215--6916327	58	1.9	58	89	7	176	19	0	29	50	1.54
6916288--6916380	23	4.1	23	68	16	70	22	1	27	48	1.58
6916525--6916573	26	1.9	25	83	4	62	46	2	2	48	1.25
6916648--6916698	3	17.3	3	80	11	61	33	0	1	64	1.05
6919053--6919173	61	2.0	61	91	0	197	38	7	6	47	1.58
6919475--6919697	11	21.1	11	70	22	90	50	0	0	48	1.10
6919497--6919776	54	5.0	56	71	21	189	50	1	1	47	1.15
6919563--6919794	57	4.2	55	71	18	153	49	1	0	47	1.17
6919993--6920031	20	2.0	20	84	0	51	76	2	7	12	1.09
6934874--6935034	81	2.0	82	86	3	225	24	13	20	42	1.87
6948035--6948120	25	3.4	25	95	0	154	17	30	19	32	1.95
6949558--6949593	18	2.0	18	100	0	72	16	16	16	50	1.79
6951840--6951881	22	1.9	22	90	0	66	28	11	16	42	1.84
6972092--6972120	13	2.1	14	93	6	51	41	0	0	58	0.98
6972092--6972139	14	3.3	15	80	11	55	41	0	0	58	0.98
6972596--6972651	26	2.2	26	83	6	69	58	0	8	32	1.29
6973558--6973711	79	1.9	79	88	0	227	33	12	24	29	1.93
6979472--6979528	30	1.9	30	85	0	78	45	0	1	52	1.11
6979501--6979552	22	2.5	22	93	6	90	50	0	0	50	1.00
6981291--6981343	20	2.7	20	75	0	52	24	11	18	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6981904--6981954	25	2.0	25	85	14	70	56	3	1	37	1.29
6982258--6982343	22	3.9	21	72	18	75	54	0	5	39	1.24
6985115--6985151	2	18.5	2	94	0	65	54	0	0	45	1.00
6985380--6985436	24	2.4	23	80	11	71	45	0	1	52	1.11
6985456--6985505	26	2.0	24	84	7	64	60	0	2	38	1.09
6988860--6988908	22	2.2	21	82	13	55	57	2	0	40	1.10
6988853--6988895	21	2.0	22	82	13	54	53	4	0	41	1.21
6988867--6988926	22	2.8	22	80	16	72	56	3	0	40	1.16
6992113--6992251	68	2.0	68	98	0	269	27	26	10	35	1.90
6995807--6996005	102	2.0	102	87	2	292	32	13	16	38	1.87
6998804--6998836	15	2.1	17	88	11	52	51	12	0	36	1.39
7000956--7000994	4	10.2	4	83	10	55	74	2	0	23	0.94
7001850--7001896	24	2.0	24	86	0	67	72	6	6	14	1.25
7001922--7001967	4	11.8	4	81	4	58	69	0	6	23	1.11
7002215--7002541	44	7.3	44	74	11	177	47	14	11	26	1.78
7002212--7002409	89	2.2	89	86	1	272	48	13	10	26	1.75
7002381--7002541	46	3.6	45	76	9	152	45	15	12	26	1.81
7002298--7002541	135	1.8	134	87	2	364	48	14	10	27	1.76
7003076--7003119	22	2.0	22	86	0	61	43	15	9	31	1.79
7003202--7003255	21	2.6	21	96	0	99	44	14	3	37	1.63
7003655--7003856	79	2.6	79	87	1	280	32	25	8	33	1.86
7004422--7004492	18	4.3	17	74	18	62	11	11	0	77	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7004460--7004516	22	2.6	22	83	5	71	12	12	0	75	1.05
7004443--7004506	30	2.1	31	88	8	96	10	10	0	78	0.98
7008805--7008855	16	3.2	16	78	10	59	76	3	1	17	1.03
7009768--7009817	4	12.8	4	78	4	57	72	4	4	20	1.18
7009769--7009816	15	3.1	15	82	5	51	70	4	4	20	1.21
7009767--7009826	27	2.2	27	82	11	77	71	3	3	21	1.15
7010453--7010484	14	2.2	15	94	5	57	18	3	0	78	0.89
7010488--7010534	3	15.7	3	100	0	94	65	0	0	34	0.93
7012176--7012219	3	14.7	3	100	0	88	68	0	0	31	0.90
7013162--7013483	125	2.6	125	84	3	398	36	9	10	44	1.71
7017848--7017879	15	2.1	16	94	5	57	84	0	6	9	0.78
7018489--7018567	33	2.4	33	86	0	104	30	10	11	48	1.72
7018828--7018986	48	3.3	47	81	8	169	32	10	13	43	1.78
7019527--7019559	10	3.4	10	91	4	50	81	0	3	15	0.80
7025252--7025319	9	7.6	9	75	6	57	66	1	2	29	1.15
7025481--7025539	21	2.8	21	77	12	59	54	8	0	37	1.31
7025570--7025601	9	3.6	9	95	0	55	71	6	0	21	1.07
7025712--7025812	52	2.0	51	84	9	134	34	2	1	60	1.23
7025799--7025834	17	2.1	17	90	10	56	36	0	2	61	1.11
7025825--7025897	20	3.8	19	83	7	94	27	2	2	67	1.18
7025825--7025897	10	7.5	10	77	13	73	27	2	2	67	1.18
7025918--7025986	19	3.8	18	75	9	52	40	2	1	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7025920--7025986	17	3.7	18	78	9	66	41	2	1	53	1.25
7025950--7025987	18	2.2	17	86	9	51	47	0	0	52	1.00
7043063--7043097	16	2.2	16	90	5	54	17	5	11	65	1.43
7049498--7049533	19	1.9	18	88	5	54	47	0	0	52	1.00
7056752--7056800	20	2.5	20	100	0	98	32	8	6	53	1.55
7057109--7057256	77	1.9	78	82	6	185	36	10	4	47	1.59
7058531--7058592	23	2.7	23	87	2	81	12	4	16	66	1.41
7062061--7062087	14	1.9	14	100	0	54	37	22	7	33	1.82
7062443--7062489	24	2.0	24	86	0	67	27	31	0	40	1.57
7062630--7062720	42	2.3	38	83	11	103	18	29	5	46	1.72
7064167--7064268	43	2.4	43	74	9	102	58	18	5	16	1.57
7068756--7068800	19	2.4	19	85	3	56	46	2	0	51	1.13
7069562--7069604	19	2.3	19	91	0	68	62	0	2	34	1.08
7069562--7069609	17	2.8	18	84	6	64	60	0	2	37	1.09
7070393--7070432	18	2.2	19	86	4	55	37	0	0	62	0.95
7083039--7083089	25	2.1	24	81	3	57	47	1	1	49	1.24
7083346--7083422	17	4.6	16	76	10	75	74	1	2	22	1.02
7083398--7083474	31	2.6	27	77	22	66	77	2	1	18	0.95
7083346--7083445	17	6.2	16	69	27	61	74	2	2	22	1.03
7083389--7083471	13	6.6	13	80	14	77	77	3	1	18	0.99
7084685--7084755	37	1.9	37	88	5	108	40	21	14	23	1.89
7085401--7085558	85	1.9	85	83	2	210	37	12	18	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7085485--7085611	68	1.9	68	88	1	193	40	11	18	30	1.85
7085854--7085960	55	1.9	55	81	3	126	48	11	15	24	1.78
7085891--7086043	55	2.8	55	84	2	191	43	13	18	24	1.85
7086806--7086839	9	3.7	9	92	4	50	5	2	0	91	0.51
7086805--7086839	10	3.6	10	88	7	54	5	2	0	91	0.50
7091526--7091621	6	16.3	6	71	19	60	76	5	1	17	1.03
7091526--7091602	23	3.4	22	79	13	93	76	5	0	18	0.96
7091543--7091616	34	2.1	35	87	7	107	75	6	0	17	1.01
7091526--7091616	11	7.9	11	77	14	78	75	5	0	18	0.98
7093492--7093521	7	4.3	7	100	0	60	40	0	13	46	1.43
7108338--7108418	25	3.2	25	75	10	74	43	0	1	55	1.07
7108328--7108377	21	2.4	21	75	0	55	50	0	0	50	1.00
7108337--7108416	27	2.9	26	82	15	83	43	0	1	55	1.08
7109153--7109215	32	2.0	32	90	0	99	50	3	1	44	1.27
7117086--7117137	21	2.3	23	80	16	63	26	0	5	67	1.13
7117092--7117136	21	2.1	22	88	8	67	28	0	2	68	1.01
7118092--7118126	18	1.9	18	88	0	52	48	0	5	45	1.26
7133996--7134046	21	2.4	22	83	12	70	68	0	7	23	1.15
7134070--7134112	17	2.5	17	96	0	77	60	6	6	25	1.48
7135812--7135875	11	5.6	11	71	18	51	75	0	4	20	0.99
7135811--7135853	14	3.0	14	86	3	50	72	0	4	23	1.04
7135828--7135875	18	2.7	17	81	9	60	75	0	6	18	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7135812--7135907	18	5.1	18	69	15	52	72	2	4	20	1.11
7140225--7140270	19	2.4	19	79	10	58	71	10	4	13	1.27
7140396--7140434	15	2.5	16	87	4	53	69	10	10	10	1.38
7154437--7154472	18	2.0	18	100	0	72	50	16	22	11	1.77
7158536--7158747	103	2.1	103	94	0	370	39	14	10	35	1.81
7158735--7158772	19	2.2	18	86	13	53	39	13	7	39	1.73
7166578--7166614	14	2.4	17	86	13	53	51	0	0	48	1.00
7166589--7166643	15	3.6	15	72	18	51	54	0	3	41	1.18
7171675--7171754	42	1.9	42	84	0	106	21	23	12	42	1.87
7173966--7174037	36	2.0	36	94	0	126	38	5	19	36	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130