genome.fa.s556.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  3  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606753--607129	66	5.9	65	77	9	339	37	24	26	11	1.89
606850--607291	96	4.6	96	74	13	354	38	25	25	10	1.88
606763--607170	192	2.1	192	93	0	690	37	25	26	11	1.89
606869--607301	162	2.7	161	82	7	470	38	25	25	10	1.88
606773--607291	192	2.7	189	87	4	650	37	25	26	10	1.89
607273--607434	36	4.5	36	78	3	121	37	22	30	10	1.88
607000--607365	162	2.3	162	86	1	493	37	24	26	11	1.90
610122--610151	13	2.2	14	94	5	53	13	0	10	76	1.01
623555--623580	12	2.2	12	100	0	52	42	7	42	7	1.62
625430--625465	18	2.0	18	88	0	54	66	2	0	30	1.06
625490--625560	37	1.9	37	83	11	92	46	0	1	52	1.09
627574--627598	2	12.5	2	100	0	50	48	0	0	52	1.00
634245--634302	2	29.0	2	96	0	107	51	0	48	0	1.00
637173--637210	17	2.2	17	90	0	58	34	10	13	42	1.78
638840--638885	21	2.2	21	84	0	56	23	30	15	30	1.95
638849--638964	21	5.5	21	73	4	99	18	34	12	34	1.89
638851--638957	42	2.5	42	87	0	151	18	33	13	34	1.89
640809--640859	2	25.5	2	91	0	84	45	0	3	50	1.20
663663--663711	24	2.0	24	92	0	80	48	4	20	26	1.67
682468--682509	19	2.3	19	91	4	68	30	0	2	66	1.04
682528--682581	22	2.4	23	81	9	67	53	0	0	46	1.00
683967--684004	3	12.7	3	100	0	76	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689793--689817	13	1.9	13	100	0	50	56	0	8	36	1.29
689812--689840	6	5.0	6	91	8	51	65	0	0	34	0.93
689792--689840	11	4.2	11	87	10	53	61	0	4	34	1.15
690446--690476	16	1.9	16	93	0	53	48	0	3	48	1.17
690444--690494	19	2.7	21	82	17	67	49	0	1	49	1.12
691046--691083	11	3.2	12	85	11	51	63	0	2	34	1.09
691035--691095	18	3.2	19	75	15	63	59	0	4	36	1.19
691045--691092	24	2.0	24	84	8	62	64	0	2	33	1.05
691165--691218	18	2.9	18	75	5	54	57	1	0	40	1.09
691132--691245	39	3.1	36	76	18	94	50	1	0	46	1.17
691402--691454	17	3.2	16	79	15	63	50	0	0	49	1.00
691567--691596	12	2.4	13	94	5	53	36	0	0	63	0.95
692342--692379	17	2.2	17	90	0	58	31	2	0	65	1.06
692597--692644	24	1.9	26	84	16	66	41	0	6	52	1.27
694010--694068	31	1.9	31	89	0	91	49	13	3	33	1.59
700338--700372	12	3.0	11	84	15	52	68	2	28	0	1.04
703411--703508	49	2.0	49	93	0	169	50	7	4	38	1.49
703422--703497	22	3.0	26	65	18	70	47	6	5	40	1.52
708588--708624	18	2.1	18	100	0	74	10	21	21	45	1.82
710848--710934	29	3.2	29	60	24	71	35	10	13	40	1.79
710848--710951	52	2.0	52	100	0	208	34	11	13	40	1.81
713846--713933	39	2.3	39	82	9	101	53	0	1	45	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
713860--713966	32	3.4	32	77	8	103	54	0	0	44	1.06
713920--713973	23	2.4	23	82	14	60	57	1	0	40	1.09
715969--716491	59	9.0	58	79	11	525	35	11	5	46	1.65
715972--716491	116	4.5	115	82	10	610	35	11	5	46	1.64
715974--716479	176	2.9	174	89	5	754	35	12	5	46	1.64
716495--716536	22	1.9	22	85	9	59	71	2	11	14	1.24
716491--716587	45	2.2	43	77	15	101	74	2	9	14	1.16
716491--716649	27	5.7	25	72	20	104	72	1	5	20	1.11
716518--716583	17	4.2	16	70	18	59	77	1	7	13	1.05
716496--716640	22	6.6	21	67	20	57	73	1	5	20	1.11
716589--716649	21	2.8	22	80	14	65	72	0	0	27	0.85
716589--716649	4	14.2	4	77	13	59	72	0	0	27	0.85
716518--716649	18	7.3	16	72	24	77	74	0	3	21	1.03
716984--717032	20	2.5	20	86	0	62	40	18	14	26	1.89
717600--717732	12	11.9	11	68	21	64	64	3	0	30	1.16
717602--717651	19	2.6	21	84	15	72	64	2	0	34	1.05
717601--717735	22	6.0	22	68	23	84	64	3	0	31	1.16
717616--717732	47	2.5	47	76	5	114	64	4	0	30	1.19
717601--717741	16	8.8	16	68	24	75	64	4	0	30	1.17
717975--718353	41	9.1	41	92	3	557	37	23	15	22	1.92
719366--719404	10	4.1	10	83	12	55	12	7	0	79	0.93
719366--719403	18	2.1	18	95	0	67	13	7	0	78	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724278--724307	15	2.1	15	93	6	53	6	26	6	60	1.47
724911--725006	4	22.5	4	73	17	61	68	3	0	28	1.04
724908--725033	22	6.0	22	69	19	72	65	3	0	30	1.10
724933--725005	29	2.4	31	77	6	78	69	4	0	26	1.06
724911--725057	19	7.5	20	69	15	76	67	4	0	28	1.09
725019--725081	28	2.2	29	78	18	71	71	6	1	20	1.16
725155--725201	24	1.9	25	86	4	69	44	2	8	44	1.46
725225--725280	22	2.6	23	75	18	66	42	0	0	57	0.99
725240--725291	19	2.6	19	78	6	59	48	0	0	51	1.00
727401--727431	13	2.4	13	94	0	53	48	0	3	48	1.17
729811--729850	20	2.0	21	90	5	64	17	17	7	57	1.62
730089--730219	61	2.2	61	97	1	246	28	7	6	58	1.50
730107--730212	30	3.5	29	75	8	113	24	9	7	58	1.55
730260--730329	34	2.0	36	83	5	90	32	0	12	54	1.39
730998--731031	15	2.3	15	89	0	50	38	11	23	26	1.89
736811--736865	2	27.5	2	100	0	110	50	0	49	0	1.00
746688--746789	50	2.0	50	88	0	150	21	35	15	27	1.94
747119--747168	20	2.7	19	88	11	77	52	0	0	48	1.00
747120--747158	20	2.0	20	100	0	78	56	0	0	43	0.99
751086--751134	17	3.0	17	82	8	66	0	16	0	83	0.64
751087--751138	11	4.6	11	90	2	77	0	15	0	84	0.62
751106--751144	20	2.0	20	84	0	51	2	10	2	84	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
751098--751147	22	2.2	22	82	3	64	2	14	2	82	0.86
755996--756030	2	17.5	2	93	0	61	51	0	48	0	1.00
757846--757898	23	2.3	24	83	9	74	49	7	0	43	1.31
765865--765893	13	2.3	13	94	5	51	82	6	0	10	0.83
769740--769766	2	13.5	2	100	0	54	0	48	0	51	1.00
769766--769795	2	15.0	2	100	0	60	50	0	0	50	1.00
772343--772382	3	13.3	3	100	0	80	67	0	0	32	0.91
775338--775370	13	2.4	14	90	5	50	63	6	15	15	1.49
780431--780459	12	2.3	13	94	5	51	89	0	10	0	0.48
781300--781341	23	1.9	21	85	9	57	50	2	0	47	1.14
791013--791039	2	13.5	2	100	0	54	48	0	0	51	1.00
791783--791825	17	2.5	17	84	0	59	9	4	9	76	1.14
794022--794049	2	14.0	2	100	0	56	50	0	0	50	1.00
794428--794471	20	2.2	20	84	8	54	27	2	6	63	1.31
795295--795320	2	13.0	2	100	0	52	50	0	0	50	1.00
798531--798570	9	4.4	9	80	0	53	47	0	52	0	1.00
798526--798570	18	2.5	18	85	0	54	46	0	53	0	1.00
800059--800090	2	16.0	2	100	0	64	50	0	0	50	1.00
800105--800173	36	1.9	36	100	0	138	36	2	23	37	1.70
818623--818832	103	2.0	103	99	0	411	31	18	13	36	1.90
843281--843319	18	2.2	19	90	9	64	53	5	0	41	1.23
852627--852666	20	2.0	21	85	5	55	72	0	17	10	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
872523--872626	54	1.9	54	98	0	199	46	25	6	22	1.76
872532--872616	27	3.2	26	70	12	82	45	27	5	21	1.74
879740--879801	6	10.5	6	75	3	63	46	0	1	51	1.10
880005--880108	38	2.9	36	79	13	92	50	4	0	44	1.30
889360--889384	2	12.5	2	100	0	50	48	0	0	52	1.00
907558--907606	24	2.1	23	85	11	64	57	2	2	38	1.22
916245--916286	2	21.0	2	100	0	84	0	50	0	50	1.00
920013--920045	2	16.5	2	100	0	66	51	0	0	48	1.00
923217--923266	23	2.1	24	82	10	59	2	28	2	68	1.12
926210--926249	15	2.6	16	88	4	55	40	17	2	40	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130