genome.fa.s556.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  117  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22928682--22928858	35	4.9	35	71	12	124	20	17	13	48	1.81
22928941--22929277	102	3.3	101	87	2	469	22	18	12	45	1.83
22928961--22929207	34	7.3	34	67	11	85	22	18	11	47	1.81
22928181--22929350	562	2.1	562	87	3	1676	22	19	12	46	1.82
22930612--22930651	22	1.9	21	85	10	55	25	35	22	17	1.95
22943656--22943849	75	2.6	73	84	7	241	20	20	11	47	1.80
22943893--22944140	34	7.3	34	65	15	109	20	17	12	49	1.79
22943885--22944315	102	4.2	102	87	0	574	20	18	13	47	1.82
22944290--22944475	74	2.5	74	85	5	277	22	19	10	47	1.80
22944340--22944453	35	3.1	35	68	14	104	21	20	13	45	1.84
22944551--22944877	102	3.2	101	88	5	496	20	20	13	45	1.85
22946782--22946806	13	1.9	13	100	0	50	48	32	0	20	1.50
22948544--22948583	20	2.0	20	85	9	55	32	7	2	57	1.40
22959788--22959836	26	1.9	26	91	4	82	30	14	30	24	1.94
22963029--22963058	2	15.0	2	100	0	60	50	0	0	50	1.00
22967064--22967120	25	2.3	25	90	0	96	40	8	10	40	1.71
22970248--22970276	2	14.5	2	100	0	58	0	51	0	48	1.00
22971085--22971138	28	1.9	28	92	0	90	38	7	7	46	1.60
22982771--22982813	17	2.5	18	77	11	54	39	2	0	58	1.11
22982791--22982843	15	3.6	14	77	7	52	47	1	0	50	1.12
22983389--22983435	18	2.6	19	80	10	53	51	0	0	48	1.00
22990022--22990061	21	2.0	20	95	5	71	25	7	7	60	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22990058--22990099	13	2.9	14	86	10	50	40	0	2	57	1.12
22991104--22991142	20	2.0	20	84	0	51	30	0	0	69	0.89
22991102--22991143	21	2.0	21	85	0	57	30	0	0	69	0.89
22996210--22996244	18	1.9	18	88	11	54	42	2	5	48	1.41
22996238--22996320	30	2.8	30	86	0	103	48	6	9	36	1.61
22997640--22997708	31	2.2	31	85	10	88	49	2	0	47	1.16
22997646--22997699	18	2.9	18	75	5	54	53	3	0	42	1.18
22998845--22998869	4	6.2	4	100	0	50	24	0	0	76	0.80
22999016--22999069	20	2.7	21	85	8	85	59	1	3	35	1.26
22999886--22999927	21	2.0	21	90	9	68	35	0	0	64	0.94
22999893--22999935	21	2.0	23	83	16	58	34	0	0	65	0.93
22999882--22999933	6	8.0	6	78	16	50	34	0	0	65	0.93
23000413--23000446	10	3.2	10	84	15	50	58	0	0	41	0.98
23001170--23001208	11	3.5	11	82	0	51	48	0	0	51	1.00
23001674--23001717	14	3.1	14	83	3	61	45	0	0	54	0.99
23010117--23010158	20	2.0	21	82	13	52	71	9	0	19	1.13
23010523--23010861	168	2.0	168	87	1	482	38	13	12	36	1.82
23017845--23017882	17	2.2	18	85	4	51	39	0	2	57	1.12
23018647--23018687	21	2.0	21	85	0	55	48	19	19	12	1.80
23020196--23020225	7	4.3	7	91	0	51	13	3	0	83	0.77
23020107--23020601	278	1.8	267	85	7	690	41	9	5	44	1.59
23021153--23021190	20	1.9	20	88	0	58	13	2	18	65	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23021574--23021636	15	4.1	15	77	16	67	76	3	0	20	0.93
23025508--23025540	16	2.0	17	88	5	50	45	0	3	51	1.16
23025499--23025653	58	2.7	58	81	9	194	43	5	2	48	1.40
23028020--23028061	19	2.2	19	86	0	57	80	2	9	7	0.97
23030427--23030591	79	2.1	79	95	0	294	23	19	18	39	1.92
23036471--23036495	2	12.5	2	100	0	50	48	0	52	0	1.00
23042968--23043012	18	2.5	18	85	7	56	75	4	0	20	0.97
23043018--23043056	12	3.2	12	82	7	51	69	2	0	28	1.02
23043102--23043148	19	2.4	20	89	3	69	48	0	0	51	1.00
23043087--23043156	18	3.7	19	76	14	74	50	0	0	50	1.00
23045391--23045454	24	2.7	23	83	7	83	48	1	0	50	1.10
23048075--23048158	18	4.8	18	74	11	77	28	4	28	38	1.77
23048076--23048200	18	6.9	18	68	15	71	31	4	31	33	1.76
23048145--23048219	39	1.9	39	83	5	98	34	4	32	29	1.76
23048547--23048580	6	5.7	6	89	0	50	29	47	0	23	1.52
23048547--23048581	18	1.9	18	94	0	61	28	45	0	25	1.54
23051994--23052042	25	1.9	26	91	4	82	40	10	2	46	1.49
23052266--23052303	20	2.0	20	89	5	60	60	5	0	34	1.19
23052567--23052603	19	1.9	19	88	0	56	24	62	0	13	1.31
23053947--23053983	19	2.1	19	90	10	60	59	0	0	40	0.97
23056742--23056772	15	2.1	15	93	0	53	12	29	6	51	1.65
23064691--23064735	18	2.5	17	82	10	54	40	6	4	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23068547--23068622	39	1.9	40	91	2	127	22	27	19	30	1.98
23072885--23072927	22	1.9	22	85	4	59	30	0	0	69	0.88
23077418--23077450	2	16.5	2	100	0	66	51	0	0	48	1.00
23081996--23082040	22	2.0	22	83	8	56	42	0	2	55	1.12
23083442--23083475	17	2.1	17	94	5	61	50	0	0	50	1.00
23086091--23086155	30	2.2	30	88	5	96	33	16	3	46	1.63
23086393--23086435	15	2.8	16	85	3	52	53	0	0	46	1.00
23094618--23094724	8	13.8	8	86	9	159	73	0	12	13	1.14
23094618--23094723	15	6.9	15	88	10	144	73	0	12	13	1.15
23094619--23094723	23	4.5	22	89	8	156	73	0	12	13	1.15
23095740--23096277	39	14.1	40	75	19	437	23	16	20	39	1.92
23095740--23096276	143	3.6	150	79	16	487	23	16	20	39	1.92
23095756--23096177	112	3.8	112	77	16	318	23	17	20	38	1.93
23095740--23096156	143	2.8	147	82	12	506	23	17	19	39	1.92
23096324--23096364	16	2.6	16	92	0	73	92	7	0	0	0.38
23096325--23096373	7	6.9	7	80	13	55	89	10	0	0	0.48
23096324--23096364	1	41.0	1	85	0	55	92	7	0	0	0.38
23096566--23096603	8	4.8	8	87	9	51	0	15	0	84	0.63
23096566--23096603	16	2.4	16	91	8	60	0	15	0	84	0.63
23096775--23096817	17	2.5	17	82	10	61	18	13	0	67	1.23
23097660--23097726	27	2.5	26	78	9	71	22	2	4	70	1.19
23097700--23097742	17	2.4	18	84	7	61	13	6	4	74	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23097781--23098193	59	7.0	60	86	6	578	43	7	13	34	1.74
23098228--23098253	13	2.0	13	100	0	52	15	0	7	76	0.99
23103458--23103492	14	2.6	13	86	8	52	54	2	0	42	1.15
23104426--23104491	32	2.1	33	83	11	84	42	1	0	56	1.08
23104510--23104598	45	2.0	46	93	2	153	49	2	5	42	1.38
23105022--23105060	18	2.1	19	85	4	53	56	12	5	25	1.57
23108878--23108910	2	16.5	2	100	0	66	51	0	48	0	1.00
23124262--23124328	20	3.1	22	81	10	68	47	0	0	52	1.00
23126510--23126542	2	17.0	2	87	6	50	45	0	0	54	0.99
23128190--23128244	23	2.4	23	78	0	56	34	7	0	58	1.26
23128187--23128244	28	2.1	28	80	6	64	34	6	0	58	1.25
23142851--23142883	15	2.2	15	94	0	57	45	6	3	45	1.43
23156198--23156235	18	2.1	19	85	5	51	52	28	5	13	1.61
23166065--23166114	22	2.3	22	96	0	91	44	8	8	40	1.63
23176323--23176360	7	5.7	7	87	6	53	50	0	0	50	1.00
23176323--23176360	13	2.9	14	84	11	53	50	0	0	50	1.00
23176324--23176365	13	3.2	13	83	10	50	54	0	0	45	0.99
23176326--23176370	19	2.4	19	80	0	54	53	0	0	46	1.00
23180404--23180463	26	2.3	27	80	11	72	43	0	1	55	1.10
23181156--23181208	27	2.0	27	96	0	97	49	26	11	13	1.75
23182224--23182254	3	10.3	3	92	0	53	0	0	64	35	0.94
23185242--23185293	2	26.5	2	84	3	70	44	1	3	50	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23189023--23189057	2	17.5	2	100	0	70	48	0	0	51	1.00
23193446--23193687	121	2.0	121	95	0	430	32	22	22	22	1.98
23196112--23196190	39	2.0	39	97	0	149	26	17	7	48	1.74
23200329--23200971	216	3.0	216	89	2	956	18	32	24	24	1.97
23203733--23203784	21	2.5	19	74	17	50	25	19	40	15	1.90
23203781--23203878	30	3.2	30	74	8	106	11	12	55	21	1.68
23203792--23203911	27	4.1	28	68	16	89	14	13	52	20	1.74
23203775--23203879	33	3.3	33	73	8	117	12	11	55	20	1.68
23203871--23203946	30	2.4	30	84	6	89	22	11	52	13	1.72
23207957--23207986	5	6.0	5	100	0	60	80	0	20	0	0.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130