genome.fa.s556.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  16  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4458120--4458157	15	2.5	15	91	8	60	81	0	2	15	0.80
4459171--4459195	8	3.1	8	100	0	50	60	0	0	40	0.97
4461375--4461427	24	2.3	23	81	12	65	39	1	3	54	1.29
4461371--4461429	23	2.3	24	78	21	59	38	1	3	55	1.26
4463698--4463740	6	7.3	6	86	5	61	83	4	0	11	0.78
4463685--4463729	18	2.4	18	92	3	72	80	4	0	15	0.87
4463696--4463756	23	2.6	24	85	15	83	80	4	0	14	0.87
4464781--4464824	21	2.1	21	83	8	54	22	4	43	29	1.73
4468250--4468282	2	16.5	2	100	0	66	48	0	0	51	1.00
4470774--4470833	29	2.1	29	84	12	79	78	0	21	0	0.75
4470871--4470898	3	9.3	3	100	0	56	67	0	0	32	0.91
4471164--4471205	21	2.0	21	95	0	75	69	0	0	30	0.89
4472821--4472853	2	16.5	2	100	0	66	48	0	0	51	1.00
4475495--4475521	10	2.7	10	100	0	54	18	0	18	62	1.32
4480459--4480493	11	3.2	11	91	0	52	42	0	0	57	0.99
4480741--4480774	14	2.4	14	90	0	50	73	2	0	23	0.97
4481772--4481823	19	2.7	19	77	14	61	75	0	1	23	0.91
4481968--4482998	529	2.0	528	93	1	1755	39	9	13	36	1.78
4487327--4487356	15	2.0	15	93	0	51	26	23	13	36	1.92
4488964--4488990	2	13.5	2	100	0	54	48	0	0	51	1.00
4490559--4490607	25	2.0	25	91	0	80	42	6	0	51	1.27
4494521--4494564	20	2.3	18	84	7	52	63	4	2	29	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4496275--4496308	16	2.1	16	88	5	50	61	0	0	38	0.96
4499879--4499908	15	2.0	15	93	0	51	26	23	13	36	1.92
4500039--4500074	2	18.0	2	100	0	72	50	0	0	50	1.00
4500717--4500757	21	2.0	21	85	0	55	65	0	2	31	1.05
4504447--4504502	18	3.2	17	79	5	58	76	10	1	10	1.09
4507817--4507846	15	2.0	15	93	0	51	26	23	13	36	1.92
4508630--4508676	19	2.6	18	86	10	60	65	0	2	31	1.04
4508639--4508679	21	2.0	21	90	0	64	63	0	2	34	1.08
4510268--4510296	2	14.5	2	100	0	58	48	0	0	51	1.00
4511866--4511920	24	2.3	24	90	0	83	38	3	0	58	1.16
4513523--4513610	44	2.0	44	82	4	106	42	20	11	26	1.86
4516587--4516625	10	3.7	10	83	12	51	76	0	2	20	0.90
4517748--4517930	36	5.0	36	70	9	120	18	18	15	48	1.82
4517688--4518879	109	11.0	109	81	3	1071	20	18	14	46	1.83
4517688--4518879	327	3.7	327	81	3	1265	20	18	14	46	1.83
4519002--4519031	3	10.0	3	100	0	60	66	0	0	33	0.92
4520041--4520074	15	2.1	16	89	10	52	26	0	0	73	0.83
4521912--4521957	16	3.0	16	78	6	51	60	0	0	39	0.97
4527568--4527613	16	3.0	16	78	6	51	60	0	0	39	0.97
4531324--4531353	2	15.0	2	100	0	60	50	0	0	50	1.00
4533103--4533133	2	15.5	2	100	0	62	48	0	0	51	1.00
4533974--4534000	13	2.1	13	100	0	54	37	33	7	22	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4539589--4539631	2	21.5	2	85	0	59	48	2	4	44	1.36
4542660--4542707	17	2.9	16	79	14	53	31	0	2	66	1.03
4542865--4542896	16	2.0	16	93	0	55	34	15	31	18	1.93
4558946--4558999	24	2.2	24	93	0	90	35	20	11	33	1.88
4560268--4560328	12	5.1	12	87	0	50	63	22	3	9	1.39
4560275--4560343	15	4.6	15	87	0	75	65	21	1	11	1.33
4560282--4560331	3	16.7	3	91	0	73	66	28	2	4	1.21
4562305--4562352	25	1.9	25	83	8	62	41	8	2	47	1.45
4562741--4562785	22	2.0	22	83	8	56	0	15	6	77	0.96
4585829--4585855	1	27.0	1	100	0	54	100	0	0	0	0.00
4600145--4600175	1	31.0	1	93	0	53	0	0	96	3	0.21
4605692--4605720	2	14.5	2	100	0	58	48	0	0	51	1.00
4607854--4607895	22	2.0	21	86	13	61	66	4	0	28	1.12
4617977--4618008	16	2.0	16	100	0	64	25	25	31	18	1.98
4621098--4621123	12	2.2	12	100	0	52	46	7	7	38	1.61
4626155--4626221	35	1.9	35	93	0	116	46	11	11	29	1.77
4628677--4629778	347	3.2	347	97	0	2062	33	17	12	36	1.88
4634263--4634302	21	1.9	21	85	10	55	30	2	0	67	1.04
4634260--4634310	26	2.0	25	88	7	75	31	3	0	64	1.11
4634742--4634797	24	2.3	24	100	0	112	35	25	7	32	1.83
4641680--4641718	19	2.0	20	90	5	62	46	5	2	46	1.38
4642236--4642303	25	2.8	23	72	14	57	44	5	2	47	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4642282--4642315	18	1.9	18	88	5	52	32	2	2	61	1.26
4641624--4642444	407	2.0	408	82	4	1001	47	7	7	38	1.59
4646646--4646677	10	3.3	10	91	8	57	28	0	0	71	0.86
4646646--4646685	19	2.1	19	90	0	62	30	0	0	70	0.88
4647261--4647289	2	14.5	2	100	0	58	51	0	0	48	1.00
4662222--4662254	15	2.2	15	100	0	66	36	15	18	30	1.91
4664378--4664429	20	2.6	20	73	11	52	61	0	0	38	0.96
4664763--4664803	10	4.3	10	78	9	50	43	0	0	56	0.99
4665007--4665064	23	2.4	24	86	11	75	43	8	5	43	1.57
4666710--4666759	25	2.0	25	96	0	91	40	26	0	34	1.56
4666962--4666988	2	13.5	2	100	0	54	48	0	0	51	1.00
4667170--4667213	19	2.4	17	79	20	52	65	0	2	31	1.05
4667184--4667279	39	2.5	38	85	6	122	59	1	3	36	1.20
4675385--4675424	2	20.0	2	100	0	80	50	0	0	50	1.00
4678466--4678498	16	2.0	17	94	5	59	51	0	0	48	1.00
4680401--4680547	23	6.7	22	69	20	78	40	4	1	53	1.30
4680473--4680554	24	3.4	25	83	11	91	41	3	0	54	1.18
4680473--4680563	26	3.7	23	80	15	94	40	3	0	56	1.16
4680704--4680751	20	2.4	20	82	6	62	27	2	2	68	1.11
4680954--4681020	29	2.3	29	82	12	77	55	8	0	35	1.32
4682098--4682160	23	2.8	21	73	23	56	49	1	3	46	1.27
4683001--4683040	20	2.0	20	90	0	62	35	5	2	57	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4684364--4684481	56	2.1	55	81	3	130	30	17	9	42	1.81
4684522--4684657	55	2.5	55	81	3	150	33	8	8	49	1.63
4684932--4684967	15	2.4	15	90	0	54	61	11	11	16	1.57
4687232--4687334	37	3.2	30	75	18	89	57	5	1	34	1.34
4687227--4687307	37	2.2	37	88	4	119	59	7	2	30	1.38
4688421--4688469	16	3.2	15	80	11	55	46	0	4	48	1.20
4690161--4690202	17	2.6	16	81	7	57	40	2	4	52	1.35
4698060--4698091	2	16.0	2	100	0	64	50	0	0	50	1.00
4698820--4698894	29	2.6	29	78	0	87	60	8	5	26	1.47
4699396--4699438	5	8.2	5	97	2	68	41	0	0	58	0.98
4699397--4699459	2	34.0	2	81	15	82	46	1	0	52	1.10
4699938--4699974	11	3.0	13	76	15	51	45	10	8	35	1.69
4705296--4705352	29	2.0	29	89	0	87	36	15	7	40	1.75
4707035--4707090	27	2.1	27	83	6	69	55	1	0	42	1.10
4707315--4707347	17	1.9	17	88	11	50	24	12	3	60	1.46
4707691--4708371	343	2.0	343	95	1	1213	38	14	20	26	1.91
4709111--4709140	9	3.3	9	95	0	51	36	0	0	63	0.95
4709328--4709650	123	2.6	122	79	6	319	35	13	11	39	1.80
4709386--4709650	123	2.1	125	83	5	322	35	13	12	38	1.82
4710741--4710804	18	3.6	17	87	8	76	37	20	4	37	1.74
4715385--4715415	3	10.3	3	100	0	62	35	0	0	64	0.94
4715495--4715540	7	6.6	7	76	18	51	73	2	0	23	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4717142--4717193	13	3.8	14	80	9	54	26	3	5	63	1.34
4717948--4718120	87	2.0	89	80	8	196	61	4	1	32	1.27
4718248--4718285	20	1.9	19	89	5	58	47	0	0	52	1.00
4718506--4718545	8	4.9	8	81	6	53	47	0	0	52	1.00
4718506--4718549	17	2.6	17	89	3	63	45	0	0	54	0.99
4719058--4719123	5	13.8	5	73	12	50	46	1	0	51	1.10
4719061--4719108	9	5.2	9	77	5	51	45	2	0	52	1.12
4719058--4719123	9	6.9	10	68	16	50	46	1	0	51	1.10
4728349--4728381	2	16.5	2	93	0	57	51	0	0	48	1.00
4735854--4735885	13	2.6	12	95	5	55	56	0	3	40	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130