genome.fa.s556.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  69  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14385250--14385297	20	2.3	22	89	7	73	52	0	2	45	1.12
14390804--14390835	2	16.0	2	100	0	64	50	0	0	50	1.00
14391302--14391342	21	1.9	22	85	5	57	34	2	4	58	1.32
14391929--14391987	28	2.0	30	83	6	77	59	0	5	35	1.20
14391940--14391987	16	2.9	16	81	9	53	64	0	2	33	1.05
14392442--14392512	28	2.5	29	76	21	78	59	0	2	38	1.12
14395342--14395376	17	2.0	18	94	5	63	17	0	8	74	1.06
14395809--14395842	13	2.6	13	85	0	50	14	29	26	29	1.95
14395899--14395953	25	2.2	24	78	15	58	14	3	7	74	1.17
14399751--14399780	13	2.3	13	94	0	51	66	3	6	23	1.30
14400069--14400254	42	4.4	42	88	2	248	39	20	14	25	1.90
14400082--14400235	83	1.8	84	91	1	256	40	18	14	25	1.90
14400195--14400382	102	1.9	101	86	1	268	32	14	12	40	1.84
14400363--14400393	7	4.6	7	96	4	55	0	0	9	90	0.46
14400410--14400656	42	5.9	42	81	5	254	39	17	15	27	1.90
14400410--14400656	83	3.0	84	82	5	263	39	17	15	27	1.90
14399932--14400590	338	2.0	324	88	4	958	34	15	13	36	1.87
14400410--14400656	125	2.0	124	83	6	311	39	17	15	27	1.90
14400925--14401033	43	2.5	42	81	10	130	33	17	11	36	1.87
14407166--14407320	59	2.7	58	82	6	197	38	11	5	45	1.63
14409983--14410035	13	3.9	13	75	7	52	71	1	5	20	1.16
14412012--14412048	17	2.2	17	90	9	58	21	13	10	54	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14413072--14413120	21	2.3	21	96	0	89	20	26	14	38	1.91
14420748--14420820	37	2.0	36	86	7	103	34	2	12	50	1.54
14438576--14438803	115	2.0	114	94	0	402	50	5	3	40	1.40
14439390--14439436	23	2.1	22	88	7	69	51	8	0	40	1.33
14444351--14444382	13	2.5	13	94	0	55	50	3	0	46	1.17
14444425--14444486	29	2.1	29	93	0	106	66	3	6	24	1.30
14444863--14444941	34	2.3	34	84	0	95	31	15	18	34	1.92
14445901--14445983	21	3.9	21	72	20	66	15	1	19	63	1.37
14445911--14445985	21	3.3	21	73	15	69	17	1	17	64	1.37
14448045--14448082	19	2.0	19	94	0	67	63	13	2	21	1.42
14450300--14450326	14	1.9	14	100	0	54	37	3	7	51	1.48
14450280--14450359	34	2.3	35	78	4	90	36	3	10	50	1.54
14451890--14451942	6	8.8	6	100	0	106	66	0	0	33	0.92
14453530--14453614	27	3.1	28	80	9	95	52	0	1	45	1.08
14453672--14453731	29	2.1	29	90	0	93	43	1	3	51	1.28
14457394--14457425	2	15.5	2	93	6	55	50	3	46	0	1.17
14458575--14458610	18	2.1	17	89	5	54	50	0	8	41	1.33
14458558--14458616	23	2.5	24	86	13	95	45	0	10	44	1.37
14466918--14467661	62	11.8	63	70	12	280	41	10	11	37	1.74
14466926--14467219	127	2.3	126	83	5	355	37	8	12	41	1.74
14467245--14467566	63	5.2	62	77	10	239	41	9	10	38	1.72
14467236--14467566	125	2.7	124	81	6	346	42	9	10	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14467298--14467716	62	6.8	63	74	7	241	41	12	10	35	1.78
14467323--14467690	125	3.0	125	77	5	325	41	12	10	35	1.78
14473732--14474469	161	4.6	159	78	6	560	31	9	15	42	1.80
14473720--14474469	322	2.3	320	79	5	735	32	9	15	42	1.80
14475770--14475864	33	2.9	33	90	3	138	38	6	8	46	1.60
14476612--14476699	21	4.0	21	77	4	59	60	0	5	34	1.20
14477578--14477710	2	67.5	2	82	5	164	44	2	4	48	1.35
14478053--14478108	29	1.9	29	82	13	71	46	0	5	48	1.25
14478442--14478497	26	2.2	25	87	12	78	42	7	8	41	1.63
14481757--14481792	18	2.1	17	89	5	54	50	0	8	41	1.33
14481740--14481798	23	2.5	24	81	13	77	45	0	13	40	1.43
14489168--14489207	2	20.0	2	84	0	53	42	2	5	50	1.37
14491001--14491030	2	15.0	2	100	0	60	50	0	0	50	1.00
14492440--14492495	29	1.9	29	85	7	78	66	0	8	25	1.21
14492493--14492524	15	2.1	15	94	0	55	56	0	40	3	1.15
14494523--14494562	17	2.4	16	84	12	53	67	7	0	25	1.16
14494534--14494568	17	2.1	17	94	0	61	71	5	0	22	1.07
14495639--14495926	44	6.6	44	73	9	162	40	15	11	31	1.83
14496060--14496173	43	2.7	43	71	14	110	40	16	5	37	1.71
14505896--14505925	9	3.2	9	90	9	51	10	10	0	80	0.92
14505896--14505925	10	3.1	10	95	4	53	10	10	0	80	0.92
14506406--14506435	15	1.9	16	93	6	53	26	13	6	53	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14509842--14509880	16	2.4	16	100	0	78	10	23	12	53	1.69
14511252--14511301	20	2.5	19	79	20	57	36	28	24	12	1.91
14512377--14512605	40	5.6	40	73	8	183	44	17	12	25	1.84
14512391--14512603	82	2.6	82	81	0	246	46	16	11	25	1.81
14512379--14512603	122	1.8	121	81	5	274	44	17	11	26	1.82
14519982--14520034	20	2.7	21	80	11	67	67	3	0	28	1.07
14521201--14521486	142	2.0	142	99	0	563	30	18	15	35	1.93
14521690--14521714	13	1.9	13	100	0	50	0	12	0	88	0.53
14522123--14522154	3	10.3	3	93	6	55	34	0	0	65	0.93
14522435--14522475	21	2.0	21	90	0	64	63	0	2	34	1.08
14530102--14530131	15	2.0	15	93	0	51	30	0	6	63	1.20
14531308--14531346	21	1.9	20	89	5	60	20	0	10	69	1.17
14532579--14532614	17	2.1	17	100	0	72	27	11	5	55	1.57
14549586--14549619	17	2.0	17	88	0	50	29	8	0	61	1.26
14549824--14549852	12	2.5	12	94	5	51	62	13	0	24	1.32
14553681--14553719	20	2.0	20	89	0	60	43	0	0	56	0.99
14554147--14554207	19	3.3	17	76	15	59	29	0	3	67	1.07
14554149--14554207	11	5.4	11	73	15	50	28	0	3	67	1.06
14555412--14555485	37	2.1	36	84	5	96	54	1	0	44	1.08
14555417--14555480	18	3.5	18	68	4	56	56	1	0	42	1.09
14556808--14556859	21	2.5	20	84	9	68	53	0	5	40	1.25
14557096--14557152	25	2.3	26	79	14	66	43	3	0	52	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14559852--14559889	18	2.1	19	90	5	60	10	15	0	73	1.09
14563003--14563222	57	3.8	57	82	6	275	39	11	6	42	1.67
14563003--14563222	115	1.9	115	85	5	302	39	11	6	42	1.67
14563146--14563296	77	1.9	78	91	1	250	40	11	4	43	1.61
14563396--14563424	3	9.7	3	100	0	58	68	0	0	31	0.89
14563349--14563424	6	12.7	6	78	13	59	64	5	0	30	1.15
14563349--14563424	9	8.4	9	73	15	59	64	5	0	30	1.15
14563888--14563941	24	2.3	23	87	3	72	53	9	3	33	1.50
14563888--14563941	23	2.3	24	83	3	65	53	9	3	33	1.50
14564243--14564474	4	58.8	4	66	19	71	67	3	3	25	1.22
14564251--14564329	22	3.6	22	83	12	83	62	6	5	26	1.41
14564393--14564476	5	17.0	5	79	16	79	77	1	0	21	0.84
14564394--14564474	27	3.1	26	83	11	103	77	1	0	20	0.83
14564394--14564476	26	3.1	28	75	17	88	77	1	0	21	0.84
14564398--14564475	6	12.3	6	77	16	70	78	1	0	20	0.83
14564651--14564738	46	1.9	46	90	0	140	43	20	13	22	1.87
14564701--14564848	43	3.5	39	74	13	125	34	20	17	27	1.95
14564701--14564955	41	6.1	41	78	5	203	36	20	15	28	1.93
14564731--14564955	84	2.7	83	80	10	221	37	19	14	28	1.91
14564690--14564926	126	1.9	125	82	6	300	37	19	15	27	1.91
14565950--14565999	14	3.4	14	80	8	55	6	12	2	80	0.98
14565950--14566017	29	2.3	29	80	9	77	10	10	1	77	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14570717--14570742	6	4.3	6	100	0	52	50	15	0	34	1.45
14583958--14583982	10	2.5	10	100	0	50	60	8	0	32	1.26
14585943--14586035	6	15.0	6	73	12	64	16	6	1	76	1.05
14585999--14586036	20	1.9	19	89	5	58	23	2	2	71	1.12
14587117--14587201	5	17.6	5	73	20	74	14	4	1	80	0.94
14587117--14587201	20	4.4	19	78	10	84	14	4	1	80	0.94
14587109--14587206	29	3.4	29	73	17	87	14	7	1	77	1.02
14587117--14587202	30	2.9	30	81	6	104	13	5	1	79	0.98
14587218--14587615	58	6.7	58	83	8	489	43	8	14	33	1.74
14587215--14587615	117	3.4	117	86	6	524	43	8	14	33	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130