genome.fa.s556.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  118  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23208272--23208320	26	1.9	26	84	12	66	30	2	10	57	1.43
23208312--23208356	24	1.9	23	90	4	72	33	0	0	66	0.92
23211289--23211316	14	2.0	14	100	0	56	42	0	7	50	1.30
23211907--23211945	20	2.0	20	85	10	53	41	5	0	53	1.23
23214572--23214631	29	2.1	28	84	6	77	50	6	0	43	1.28
23224463--23224497	12	2.8	13	86	8	54	45	0	0	54	0.99
23225338--23225362	1	25.0	1	100	0	50	100	0	0	0	0.00
23227221--23227269	24	2.0	24	88	8	71	32	0	8	59	1.27
23227277--23227314	19	2.0	19	89	0	58	31	0	0	68	0.90
23227236--23227317	25	3.3	26	75	14	75	34	1	2	62	1.16
23235260--23235323	21	3.1	21	63	17	53	48	4	4	42	1.45
23235260--23235344	40	2.1	40	89	4	127	50	3	3	42	1.36
23235776--23235830	27	2.1	26	86	3	74	61	0	3	34	1.13
23235875--23235914	16	2.4	17	83	12	55	37	0	0	62	0.95
23236075--23236116	21	2.0	21	100	0	84	61	19	0	19	1.34
23244123--23244173	18	2.9	16	81	18	50	72	3	3	19	1.16
23246524--23246562	18	2.2	17	86	4	51	46	0	2	51	1.14
23248392--23248431	19	2.0	21	90	9	66	55	0	5	40	1.22
23248878--23248910	14	2.3	15	89	5	50	39	3	0	57	1.14
23251725--23252029	153	2.0	153	94	1	540	38	12	12	36	1.81
23260688--23260721	12	2.8	12	86	4	50	64	0	0	35	0.94
23264152--23264206	16	3.6	16	76	11	53	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23264977--23265009	14	2.3	15	89	5	50	39	0	12	48	1.40
23265087--23265111	13	1.9	13	100	0	50	92	8	0	0	0.40
23265117--23265156	19	2.1	19	86	9	55	32	0	0	67	0.91
23267821--23267852	16	2.0	16	93	0	55	59	9	0	31	1.29
23268591--23268651	29	2.2	29	85	5	81	42	3	1	52	1.27
23268704--23268784	28	2.8	29	84	5	110	49	6	7	37	1.56
23268704--23268791	30	3.1	28	85	4	106	48	6	6	37	1.56
23269355--23269419	29	2.2	29	77	0	76	44	1	3	50	1.26
23279865--23279903	18	2.2	18	86	9	53	66	5	7	20	1.36
23279865--23279904	19	2.2	18	86	4	53	67	5	7	20	1.34
23280747--23280791	18	2.4	18	81	3	54	48	0	0	51	1.00
23281179--23281230	23	2.2	24	86	3	70	59	1	0	38	1.08
23281179--23281230	24	2.2	23	83	10	61	59	1	0	38	1.08
23282168--23282221	16	3.2	16	78	5	54	50	3	7	38	1.48
23284262--23284309	3	16.0	3	100	0	96	33	0	0	66	0.92
23284553--23284598	17	2.5	19	76	20	53	69	0	6	23	1.11
23284650--23284687	17	2.2	17	86	13	51	65	0	0	34	0.93
23284649--23284695	18	2.5	19	77	22	55	63	0	2	34	1.06
23285525--23285551	14	1.9	14	100	0	54	81	0	0	18	0.69
23296726--23296759	1	34.0	1	87	0	50	0	5	0	94	0.32
23300289--23300786	84	5.9	84	89	1	676	36	15	26	22	1.93
23304937--23304965	2	14.5	2	100	0	58	51	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23309930--23309970	14	2.8	15	88	7	66	19	0	24	56	1.42
23309992--23310109	57	2.1	56	84	7	150	27	2	20	50	1.61
23310064--23310194	14	9.3	14	70	5	75	23	3	22	50	1.65
23310072--23310171	42	2.4	42	87	0	146	24	5	22	49	1.70
23310139--23310216	28	2.7	29	86	7	97	20	1	26	51	1.55
23310148--23310216	29	2.3	29	85	7	86	21	1	26	50	1.57
23310207--23310275	29	2.3	29	80	2	75	20	1	31	46	1.60
23310176--23310345	75	2.3	74	79	3	189	21	1	33	44	1.60
23310680--23310729	23	2.2	23	81	0	55	28	2	6	64	1.28
23311358--23311422	29	2.2	28	73	7	67	56	1	0	41	1.08
23312254--23312295	21	2.0	21	95	0	75	23	2	0	73	0.94
23313744--23313791	14	3.4	14	81	13	55	41	0	4	54	1.20
23328476--23328528	21	2.6	21	88	11	83	47	0	0	52	1.00
23328451--23328504	16	3.5	15	78	9	56	46	0	0	53	1.00
23328476--23328527	22	2.5	22	93	6	90	48	0	0	51	1.00
23329011--23329041	16	2.0	16	93	6	55	51	0	0	48	1.00
23329021--23329078	26	2.3	24	82	8	62	37	0	0	62	0.96
23329415--23329469	19	2.9	18	81	8	65	65	7	7	20	1.41
23330056--23330169	54	2.1	54	83	6	142	50	13	0	35	1.47
23339151--23339183	11	3.1	11	95	4	59	48	27	9	15	1.74
23344151--23344193	20	2.0	21	86	8	61	44	6	4	44	1.52
23348264--23348329	33	2.0	32	91	2	105	48	0	1	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23348275--23348334	20	3.0	20	68	20	52	46	0	0	53	1.00
23348277--23348350	7	10.7	7	69	23	50	48	0	0	51	1.00
23348409--23348449	11	3.5	11	81	12	55	29	0	0	70	0.87
23348409--23348459	24	2.1	24	82	7	59	33	1	0	64	1.05
23365923--23365959	15	2.4	16	82	13	51	70	2	0	27	1.01
23367903--23367935	2	16.5	2	100	0	66	48	0	0	51	1.00
23370923--23371441	254	2.0	258	89	2	805	45	9	15	29	1.77
23371981--23372020	21	1.9	21	89	0	62	57	0	2	40	1.12
23374266--23374307	2	21.5	2	95	4	77	50	0	0	50	1.00
23379273--23379324	22	2.4	22	81	9	63	46	0	1	51	1.12
23379395--23379438	21	2.1	21	82	0	52	52	2	0	45	1.13
23379419--23379447	14	2.1	14	93	6	51	48	0	0	51	1.00
23379569--23379616	25	2.0	25	87	4	71	50	0	0	50	1.00
23379574--23379645	37	2.0	36	84	13	94	51	1	0	47	1.09
23391060--23391107	21	2.3	21	85	0	60	4	22	0	72	1.01
23391617--23391650	14	2.2	16	90	10	54	55	0	0	44	0.99
23395055--23395099	21	2.1	21	83	0	54	31	6	2	60	1.35
23395784--23395824	18	2.3	18	91	4	66	36	12	0	51	1.40
23407130--23407188	28	2.1	28	90	0	91	33	16	25	23	1.96
23410764--23410804	20	2.0	20	85	0	55	51	0	2	46	1.14
23411735--23411759	13	1.9	13	100	0	50	72	0	0	28	0.86
23412111--23412147	18	2.0	19	89	5	58	78	0	10	10	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23417613--23417845	107	2.2	107	88	0	340	40	15	9	34	1.79
23418436--23418489	22	2.5	21	79	11	56	24	0	24	51	1.48
23420085--23420128	15	2.9	15	82	0	52	38	2	2	56	1.24
23420090--23420129	21	1.9	21	89	0	62	40	2	2	55	1.27
23420084--23420116	12	2.8	12	95	0	57	39	0	3	57	1.14
23420755--23420844	20	4.6	20	78	14	89	78	6	0	14	0.93
23420750--23420844	39	2.4	39	79	12	104	77	6	1	14	1.01
23421067--23421113	23	2.0	23	76	8	51	42	0	0	57	0.98
23424173--23424237	32	2.0	32	96	0	121	21	23	6	49	1.72
23429692--23429749	22	2.6	21	73	13	53	27	10	5	56	1.54
23430192--23430231	3	13.3	3	100	0	80	32	0	0	67	0.91
23442646--23442690	24	1.9	24	90	4	74	71	0	4	24	1.05
23442634--23442736	35	2.9	34	77	12	109	71	0	3	23	1.08
23443000--23443286	41	7.1	41	78	4	237	39	20	14	25	1.91
23446334--23446377	23	2.0	22	86	4	61	50	9	2	38	1.47
23454440--23454479	16	2.5	16	91	0	62	40	22	2	35	1.68
23462396--23462433	19	2.0	19	100	0	76	36	26	15	21	1.93
23465213--23465245	2	16.5	2	100	0	66	0	48	0	51	1.00
23465245--23465274	2	15.0	2	92	0	51	53	0	0	46	1.00
23477355--23477422	33	2.1	33	100	0	136	44	14	11	29	1.81
23477715--23477768	28	2.0	27	88	3	81	46	14	7	31	1.73
23478804--23478840	17	2.2	17	100	0	74	48	10	8	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23488678--23488720	14	3.0	14	75	3	50	51	9	13	25	1.71
23496382--23496809	144	3.0	144	98	0	811	36	16	16	30	1.91
23499909--23499954	23	1.9	23	82	8	56	39	0	4	56	1.19
23500199--23500233	17	2.1	17	88	0	52	40	2	0	57	1.14
23504167--23504197	2	15.5	2	100	0	62	0	0	48	51	1.00
23513680--23513723	23	2.0	22	81	4	52	25	11	0	63	1.27
23514012--23514066	24	2.2	24	84	9	67	58	0	0	41	0.98
23514012--23514063	21	2.3	23	84	15	65	57	0	0	42	0.98
23519234--23519369	70	1.9	71	80	7	161	43	3	11	41	1.57
23519977--23520005	14	2.0	15	93	6	51	41	20	17	20	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130