genome.fa.s556.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  33  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8489006--8489036	16	1.9	16	93	0	53	29	25	12	32	1.93
8489307--8489408	42	2.4	43	81	6	136	24	18	12	44	1.85
8489307--8489429	42	3.0	42	81	3	124	23	17	13	45	1.84
8489405--8489684	42	6.5	43	80	5	289	24	13	18	43	1.86
8489405--8489669	86	3.1	86	83	6	322	24	13	17	43	1.86
8489892--8489935	6	7.7	6	87	7	65	27	0	0	72	0.85
8489893--8489935	17	2.5	17	92	0	68	27	0	0	72	0.85
8489882--8490053	6	27.2	6	69	16	53	26	3	1	69	1.12
8489882--8489946	12	5.4	12	83	5	69	24	3	0	72	0.99
8489938--8490051	3	36.0	3	73	18	63	28	3	1	66	1.18
8489957--8490043	24	3.5	26	80	12	112	27	4	1	66	1.18
8489950--8490052	47	2.3	41	73	20	107	27	3	0	67	1.14
8489942--8490052	23	4.9	23	77	10	106	27	3	1	67	1.17
8489926--8490054	49	2.7	47	82	11	147	27	3	1	67	1.17
8490003--8490051	20	2.4	20	80	12	55	26	4	2	67	1.19
8490900--8490960	5	12.6	5	76	13	65	18	1	1	78	0.91
8490993--8491021	9	3.0	10	90	10	51	82	0	0	17	0.66
8491120--8491318	61	3.3	60	81	11	239	43	6	14	35	1.71
8493436--8493481	10	4.8	10	80	15	53	76	6	15	2	1.09
8493434--8493497	19	3.4	19	78	6	67	78	4	15	1	1.00
8495123--8495276	67	2.3	68	84	3	186	31	25	13	29	1.94
8495168--8495276	23	4.8	23	76	3	105	31	27	12	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8495194--8495283	45	2.0	45	88	0	135	31	30	11	27	1.91
8495312--8495366	22	2.4	23	81	3	67	32	21	7	38	1.81
8496366--8496390	10	2.5	10	100	0	50	32	0	20	48	1.50
8496387--8496436	19	2.6	19	100	0	100	28	4	6	62	1.37
8496914--8496968	23	2.4	23	79	8	58	23	0	7	69	1.14
8497825--8497854	14	2.1	14	93	0	51	70	0	0	30	0.88
8507413--8507476	3	23.7	3	77	17	52	31	0	3	65	1.08
8507413--8507476	5	11.8	6	79	12	52	31	0	3	65	1.08
8507413--8507476	23	2.7	24	82	7	85	31	0	3	65	1.08
8507503--8507546	3	14.7	3	100	0	88	34	31	0	34	1.58
8507545--8507625	3	27.3	3	89	2	128	29	1	0	69	0.97
8508510--8508542	16	2.1	15	94	5	57	12	6	0	81	0.85
8508495--8508539	21	2.2	20	88	4	63	11	6	0	82	0.84
8508515--8508556	16	2.5	17	85	11	52	14	7	0	78	0.95
8508495--8508570	15	5.1	14	74	17	57	13	6	1	78	0.99
8511302--8511367	2	33.0	2	75	6	53	40	3	7	48	1.47
8513895--8514051	73	2.2	73	82	4	192	41	22	8	26	1.83
8516466--8516508	16	2.7	15	85	7	50	6	27	0	65	1.18
8523515--8523548	2	17.0	2	100	0	68	0	50	0	50	1.00
8523834--8523896	30	2.1	30	82	8	76	25	1	1	71	1.04
8523916--8524009	30	3.2	29	80	7	100	52	0	5	42	1.24
8523955--8524006	24	2.1	25	82	10	63	53	0	1	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8524451--8524510	28	2.1	28	88	11	88	58	5	1	35	1.30
8527473--8527559	45	2.0	44	86	6	122	39	2	6	51	1.41
8531300--8531353	16	3.7	15	77	22	53	46	1	0	51	1.11
8531315--8531385	29	2.6	28	76	13	76	47	1	1	49	1.18
8531507--8531552	11	4.4	11	81	10	60	63	0	6	30	1.20
8531507--8531549	20	2.1	21	86	4	61	62	0	6	30	1.21
8532324--8532407	14	6.2	14	75	16	63	45	1	1	52	1.16
8532438--8532503	20	3.7	18	70	12	55	51	3	3	42	1.32
8532625--8532680	20	2.7	21	77	2	69	39	25	16	19	1.91
8534040--8534086	20	2.3	20	81	0	58	72	2	6	19	1.17
8534052--8534098	20	2.3	20	81	0	58	72	2	4	21	1.12
8535651--8535811	83	1.9	83	82	2	198	37	14	16	31	1.89
8535710--8535988	83	3.4	82	76	9	235	43	13	10	33	1.78
8535793--8535988	84	2.3	83	79	6	209	43	11	9	35	1.73
8537144--8537173	15	2.0	15	93	0	51	23	13	10	53	1.69
8544760--8544797	15	2.5	15	91	4	58	73	0	2	23	0.95
8545954--8546141	104	1.8	104	79	9	222	34	8	11	45	1.70
8547225--8547272	19	2.4	21	82	6	64	68	2	4	25	1.18
8549768--8549912	71	2.0	73	82	4	179	49	4	9	35	1.57
8551000--8551048	21	2.3	21	85	0	62	42	2	0	55	1.11
8555156--8555222	33	2.0	33	91	0	107	31	28	5	34	1.81
8557827--8558128	109	2.8	110	91	1	498	23	15	20	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8560566--8560617	25	2.1	25	85	0	68	38	0	0	61	0.96
8560575--8560622	25	1.9	25	86	4	62	37	0	0	62	0.95
8561054--8561163	48	2.4	43	74	18	105	52	2	0	43	1.21
8561323--8561363	17	2.6	16	84	7	57	51	2	2	43	1.28
8561371--8561407	17	2.1	18	85	14	51	59	0	0	40	0.97
8561378--8561417	20	2.0	20	85	0	53	60	2	2	35	1.24
8561531--8561604	26	2.9	25	83	13	89	45	1	1	51	1.18
8565524--8565573	25	2.0	26	88	11	77	58	6	0	36	1.23
8580139--8580185	23	2.0	23	84	8	60	48	2	2	46	1.25
8580790--8580847	25	2.3	26	78	6	64	43	1	6	48	1.40
8581529--8581573	22	2.0	22	82	8	54	60	0	2	37	1.09
8582408--8582454	2	23.5	2	91	0	58	40	0	6	53	1.27
8584774--8584803	14	2.1	14	100	0	60	36	0	13	50	1.42
8588188--8588326	73	1.9	73	91	2	226	28	16	25	29	1.97
8594741--8594807	34	2.0	34	96	0	125	40	13	11	34	1.81
8595978--8596002	12	2.1	12	100	0	50	16	0	0	84	0.63
8596870--8597025	41	3.8	41	83	5	190	43	19	14	22	1.87
8596870--8597025	82	1.9	83	85	9	221	43	19	14	22	1.87
8597277--8597315	20	2.0	20	89	0	60	33	20	12	33	1.91
8597447--8597504	21	2.7	22	83	2	73	36	17	10	36	1.84
8597798--8597841	23	1.9	23	86	9	63	27	25	4	43	1.74
8598714--8598797	19	4.4	19	81	14	93	9	7	1	82	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8598692--8598801	41	2.5	42	73	21	100	10	10	0	77	1.05
8598688--8598772	32	2.6	32	81	10	91	10	12	1	75	1.11
8598716--8598796	8	9.9	8	76	14	60	9	7	1	81	0.93
8599153--8599198	23	2.0	23	83	8	58	4	26	2	67	1.21
8602224--8602361	61	2.2	62	80	1	152	39	17	5	37	1.74
8602644--8602700	26	2.2	26	84	3	71	40	24	1	33	1.66
8602834--8602886	24	2.2	24	86	3	70	50	13	0	35	1.41
8604037--8604102	31	2.1	31	97	0	123	40	12	10	36	1.77
8602462--8604648	587	3.8	577	78	7	1998	38	17	6	37	1.76
8604536--8604669	61	2.2	60	81	5	171	40	20	4	34	1.73
8613938--8613987	21	2.4	21	77	12	57	38	8	4	50	1.51
8615309--8615341	16	2.1	16	94	5	59	30	0	0	69	0.88
8615755--8615828	21	3.5	21	67	18	55	28	6	5	59	1.45
8615518--8616451	438	2.1	436	87	5	1348	30	10	5	53	1.57
8614389--8616145	888	2.0	886	80	8	1955	31	9	5	53	1.56
8615311--8616726	224	6.5	217	78	8	838	31	10	5	52	1.59
8615799--8616726	224	4.2	224	80	7	983	31	10	5	52	1.60
8618203--8618246	23	1.9	23	81	9	54	54	0	0	45	0.99
8618230--8618290	32	2.0	30	90	6	95	59	1	0	39	1.08
8618227--8618303	16	4.8	16	72	24	56	59	1	0	38	1.06
8625140--8625187	25	1.9	25	87	8	71	60	2	0	37	1.09
8640955--8640999	24	1.9	23	86	4	63	68	4	24	2	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8650165--8650205	21	1.9	22	90	5	66	17	17	60	4	1.52
8652514--8652556	22	1.9	23	90	4	70	44	2	9	44	1.49
8652537--8652913	59	6.6	59	74	15	333	34	9	5	50	1.57
8652872--8652959	46	1.9	46	86	9	126	39	7	3	48	1.49
8659406--8659441	2	18.0	2	94	0	63	47	0	2	50	1.15
8659921--8659953	2	16.5	2	100	0	66	48	0	0	51	1.00
8661803--8661890	42	2.1	42	83	6	108	39	10	6	43	1.65
8664453--8664544	42	2.2	43	80	11	109	44	6	3	45	1.45
8664575--8664616	21	2.0	20	86	13	59	45	4	0	50	1.23
8666186--8666249	22	2.9	22	88	2	92	4	18	0	76	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130