genome.fa.s556.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  89  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17388394--17388429	18	2.0	18	88	0	54	30	8	25	36	1.85
17390441--17390508	11	5.7	11	70	16	55	47	10	8	33	1.69
17390434--17390511	38	2.1	38	87	0	111	46	11	7	34	1.69
17394979--17395021	13	3.5	13	75	12	54	46	6	6	39	1.58
17394977--17395024	24	2.0	24	100	0	96	45	8	8	37	1.64
17396522--17396570	26	2.0	25	88	8	73	4	10	6	79	1.03
17396525--17396579	27	2.1	27	83	10	69	7	10	7	74	1.21
17397376--17397405	13	2.3	13	94	0	51	23	6	3	66	1.30
17398655--17398830	81	2.2	81	86	4	239	25	25	18	31	1.98
17399891--17400162	59	4.7	58	85	5	352	44	6	12	36	1.68
17406282--17407034	41	18.1	41	91	2	1139	23	17	22	36	1.95
17406282--17407034	83	9.1	83	90	3	1178	23	17	22	36	1.95
17406282--17407034	208	3.6	207	91	3	1246	23	17	22	36	1.95
17407066--17407266	101	2.0	101	91	3	325	33	12	16	36	1.87
17407270--17407306	13	2.8	14	84	8	51	75	2	10	10	1.14
17407463--17407492	13	2.3	13	94	0	51	23	6	3	66	1.30
17408736--17408893	81	2.0	81	89	3	248	24	24	20	31	1.98
17410007--17410237	59	3.9	59	84	0	284	45	5	14	35	1.68
17410020--17410234	118	1.8	117	87	3	324	43	5	15	35	1.70
17412498--17412523	3	8.7	3	100	0	52	69	0	30	0	0.89
17429076--17429174	26	4.0	26	67	19	68	23	4	2	70	1.14
17432297--17432341	20	2.4	20	82	10	60	64	2	0	33	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17432816--17432904	41	2.2	39	81	16	103	57	4	0	38	1.19
17432816--17432908	21	4.7	20	74	10	82	59	4	0	36	1.17
17432999--17433045	19	2.7	17	81	12	60	68	10	0	21	1.20
17433048--17433104	21	2.8	20	81	5	60	54	1	5	38	1.33
17433060--17433106	21	2.2	21	88	0	67	59	0	4	36	1.17
17433069--17433107	11	3.6	11	79	6	53	56	0	2	41	1.13
17433070--17433109	21	1.9	21	100	0	80	55	0	2	42	1.13
17433536--17433786	10	25.1	10	66	16	76	35	1	6	56	1.34
17433662--17433756	19	4.8	19	77	11	75	34	2	3	60	1.25
17433610--17433792	89	2.1	88	80	12	198	37	2	4	55	1.32
17433685--17433737	21	2.6	21	82	5	65	37	3	1	56	1.28
17433663--17433786	11	12.3	11	75	20	53	33	1	5	59	1.30
17442248--17442310	6	10.8	6	91	1	76	39	15	0	44	1.47
17445437--17445503	20	3.4	20	76	15	52	25	1	7	65	1.27
17447697--17447723	2	13.5	2	100	0	54	48	0	0	51	1.00
17450355--17450390	19	1.9	18	94	5	63	22	0	2	75	0.94
17456448--17456492	20	2.2	21	84	11	67	48	2	0	48	1.13
17456693--17456734	3	14.0	3	100	0	84	66	0	0	33	0.92
17456809--17456843	2	18.0	2	94	5	63	51	0	0	48	1.00
17457407--17457449	17	2.4	17	88	7	59	30	0	6	62	1.21
17459825--17459882	24	2.4	24	79	2	71	56	1	0	41	1.09
17460086--17460126	20	2.1	19	86	4	55	36	4	9	48	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17462609--17462673	18	3.6	18	79	8	69	35	15	12	36	1.85
17462628--17462674	18	2.6	19	86	10	71	36	14	12	36	1.85
17462596--17462682	18	4.9	17	72	14	59	36	13	14	34	1.86
17462861--17462895	17	2.1	17	100	0	70	42	17	11	28	1.83
17463034--17463146	22	5.2	21	67	13	68	43	13	7	36	1.71
17463033--17463244	43	4.8	44	78	7	187	39	14	8	37	1.77
17469028--17469115	38	2.4	37	79	11	90	34	7	12	45	1.71
17469105--17469135	16	1.9	16	100	0	62	48	0	0	51	1.00
17469655--17469695	2	20.5	2	89	0	64	2	46	0	51	1.14
17472942--17473008	32	2.1	32	94	0	116	23	14	11	49	1.77
17472940--17472998	18	3.5	18	68	25	56	20	16	15	47	1.83
17481798--17481839	8	5.4	8	80	5	50	28	0	21	50	1.49
17481798--17481839	15	2.7	16	88	3	59	28	0	21	50	1.49
17481798--17481908	16	7.1	16	73	14	72	23	0	25	50	1.55
17481812--17481917	8	13.5	8	71	13	60	22	0	25	50	1.55
17482931--17482990	13	4.5	13	73	10	59	5	20	0	75	0.99
17482909--17482990	26	3.0	28	74	13	82	3	20	1	74	1.04
17484136--17484184	14	3.6	14	75	13	57	57	22	2	18	1.51
17492218--17492246	7	4.1	7	100	0	58	17	41	27	13	1.87
17492924--17492958	17	2.1	17	89	5	54	60	0	5	34	1.21
17496253--17496288	2	18.0	2	94	0	63	47	0	2	50	1.15
17510011--17510053	22	1.9	23	85	4	61	30	0	27	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17511291--17511425	49	2.7	50	77	2	146	62	5	3	28	1.33
17512021--17512061	22	2.0	21	85	9	57	56	12	4	26	1.56
17512625--17512971	158	2.2	157	82	4	412	42	15	7	34	1.76
17512625--17513011	158	2.4	158	81	3	386	42	15	7	34	1.75
17513115--17513173	27	2.2	27	85	11	77	35	30	11	22	1.90
17514915--17514981	31	2.1	32	94	2	118	38	1	26	32	1.66
17516823--17516894	29	2.4	30	82	15	94	70	11	0	18	1.15
17517152--17517181	15	2.1	14	93	6	51	0	23	0	76	0.78
17517612--17517710	24	4.3	23	75	13	80	74	7	3	15	1.15
17517612--17517707	23	4.2	24	68	14	60	73	7	3	15	1.17
17517645--17517720	20	3.8	20	78	16	61	76	6	1	15	1.06
17517690--17517718	12	2.3	13	94	5	51	82	0	0	17	0.66
17517662--17517728	20	3.3	19	76	12	62	73	2	2	20	1.10
17518033--17518072	21	1.9	21	90	10	64	47	7	10	35	1.65
17518434--17518485	14	3.6	14	75	10	50	57	0	0	42	0.98
17518437--17518475	16	2.4	16	86	0	51	61	0	0	38	0.96
17518422--17518493	30	2.4	30	83	4	83	55	0	0	44	0.99
17519883--17519923	22	2.0	21	86	13	59	51	2	2	43	1.28
17520170--17520205	17	2.1	17	90	10	56	50	2	0	47	1.15
17520762--17520803	20	2.2	20	87	8	61	28	0	4	66	1.12
17521793--17521820	3	9.3	3	100	0	56	67	0	0	32	0.91
17523482--17523655	60	2.9	62	82	9	173	42	16	4	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17524081--17524268	60	3.2	58	73	11	164	38	12	3	45	1.60
17527863--17527905	21	2.0	21	100	0	86	27	27	16	27	1.97
17530909--17530938	1	30.0	1	100	0	60	0	0	0	100	0.00
17537604--17537633	3	10.0	3	100	0	60	33	33	33	0	1.58
17555844--17555891	25	1.9	25	100	0	96	35	10	12	41	1.77
17562561--17562602	17	2.4	18	84	7	52	38	2	0	59	1.10
17565874--17565922	25	2.0	25	83	0	62	22	28	4	44	1.71
17577809--17577854	23	2.0	24	95	4	85	21	8	6	63	1.46
17578355--17578498	72	2.0	72	81	8	168	33	25	8	33	1.86
17580291--17580337	21	2.2	21	88	0	67	21	14	12	51	1.76
17580465--17580636	89	1.9	88	82	2	200	29	12	15	43	1.83
17581769--17581874	47	2.3	47	81	1	124	31	9	17	41	1.82
17582007--17582052	19	2.5	19	89	3	67	76	6	2	15	1.09
17582111--17582166	26	2.1	27	83	3	69	10	1	17	69	1.26
17585091--17585263	51	3.5	48	76	13	149	21	15	8	54	1.66
17587690--17587733	18	2.4	17	85	14	61	75	0	0	25	0.81
17587690--17587733	19	2.4	18	88	11	63	75	0	0	25	0.81
17587700--17587740	21	2.0	21	90	0	64	70	0	0	29	0.87
17587688--17587730	14	3.0	14	77	16	52	72	0	0	27	0.85
17594642--17594683	15	2.9	15	78	3	50	54	0	0	45	0.99
17599629--17599681	22	2.5	22	84	9	65	56	0	1	41	1.10
17599838--17599870	17	1.9	17	93	0	57	45	0	12	42	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17599898--17599971	34	2.2	34	85	4	96	36	10	5	47	1.62
17603202--17603237	3	11.7	3	94	5	63	33	0	0	66	0.92
17604072--17604113	5	8.8	5	84	10	61	19	0	2	78	0.86
17604066--17604104	18	2.2	18	90	0	60	15	5	2	76	1.06
17615349--17615647	119	2.5	117	77	6	298	17	19	17	46	1.84
17615907--17615971	26	2.5	26	87	0	85	20	29	16	33	1.95
17616090--17616126	3	12.3	3	100	0	74	32	0	0	67	0.91
17617672--17617719	5	9.4	5	78	13	53	75	2	6	16	1.11
17629295--17629336	22	1.9	22	90	0	66	45	19	9	26	1.80
17629551--17629710	84	1.9	84	96	0	293	36	10	12	40	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130