genome.fa.s556.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  82  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16458840--16458994	48	3.3	48	82	6	201	34	4	5	55	1.44
16458847--16459003	72	2.2	72	87	3	217	35	4	5	54	1.43
16458989--16459036	24	2.0	24	95	0	87	37	2	4	56	1.30
16459012--16459069	18	3.3	18	68	29	52	34	5	8	51	1.55
16465612--16465746	48	2.8	48	78	6	157	31	11	16	40	1.85
16466223--16466249	14	1.9	14	100	0	54	22	0	3	74	0.98
16466343--16466388	24	1.9	24	86	0	65	21	8	17	52	1.71
16468197--16468238	12	3.5	12	78	12	50	28	2	11	57	1.47
16468198--16468297	24	4.2	24	88	0	137	33	4	8	55	1.48
16471232--16471270	20	2.0	20	94	0	69	48	20	2	28	1.62
16471264--16471301	18	2.1	18	95	0	67	36	23	2	36	1.69
16479798--16479839	22	1.9	22	85	9	59	47	26	2	23	1.64
16480736--16480792	23	2.5	22	83	8	62	50	15	1	31	1.54
16482116--16482154	11	3.5	11	83	13	53	69	0	0	30	0.89
16482114--16482148	14	2.5	14	90	9	54	71	0	0	28	0.86
16483450--16483494	17	2.6	17	78	0	54	44	6	11	37	1.66
16484045--16484089	23	2.0	22	87	8	65	46	8	2	42	1.47
16487184--16487254	26	2.8	25	81	8	90	47	0	2	49	1.16
16487218--16487257	15	2.6	16	84	4	55	50	0	2	47	1.14
16487976--16488121	64	2.3	63	84	1	193	43	6	3	46	1.45
16488143--16488264	63	1.9	62	88	6	183	44	4	6	44	1.51
16489839--16489908	30	2.3	30	87	7	97	31	11	1	55	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16490007--16490137	28	4.6	28	73	17	99	48	4	2	44	1.35
16490007--16490129	57	2.1	57	81	10	135	47	4	2	44	1.37
16490146--16490212	26	2.6	26	83	4	82	50	0	1	47	1.10
16490372--16490547	71	2.5	69	80	7	194	52	1	2	42	1.26
16490575--16490704	39	3.2	39	77	9	116	49	3	1	45	1.29
16490372--16490777	29	14.4	28	68	15	171	51	2	2	42	1.30
16490593--16490658	21	3.3	21	66	12	66	45	3	1	50	1.26
16490752--16490777	11	2.4	11	100	0	52	61	0	0	38	0.96
16490652--16490778	55	2.3	53	73	9	128	54	2	2	40	1.26
16490920--16490954	14	2.6	13	91	8	61	40	0	5	54	1.24
16492691--16492745	26	2.1	25	86	10	74	50	0	1	47	1.11
16499236--16499270	18	2.0	18	88	5	54	37	0	0	62	0.95
16502023--16502211	72	2.6	71	78	8	195	39	7	6	46	1.59
16502260--16502474	115	1.9	112	80	6	254	33	13	5	46	1.67
16502376--16502623	72	3.5	69	77	9	219	39	10	5	44	1.62
16503284--16503324	6	6.8	6	100	0	82	65	0	0	34	0.93
16504475--16504548	24	3.2	23	73	7	69	74	4	5	16	1.16
16508129--16508168	19	2.1	19	90	0	62	50	2	5	42	1.37
16510627--16510651	2	12.5	2	100	0	50	0	52	0	48	1.00
16513255--16513296	21	2.0	21	100	0	84	14	23	14	47	1.80
16514418--16514453	2	17.5	2	94	5	63	47	0	2	50	1.15
16514419--16514451	17	1.9	17	100	0	66	48	0	3	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16514418--16514456	19	2.1	19	100	0	78	46	0	5	48	1.24
16514627--16514679	2	26.5	2	96	0	97	49	0	1	49	1.12
16517061--16517093	17	1.9	17	88	11	50	81	0	6	12	0.85
16522582--16522630	21	2.4	20	83	6	62	48	0	0	51	1.00
16522606--16522643	17	2.2	17	95	0	67	42	0	0	57	0.98
16522600--16522640	17	2.6	15	82	14	55	43	0	0	56	0.99
16522801--16522912	40	2.7	39	72	12	100	47	0	1	50	1.18
16527383--16527424	13	3.3	13	78	18	52	52	0	0	47	1.00
16527384--16527443	30	2.1	28	84	6	75	60	0	0	40	0.97
16528693--16528749	30	1.9	30	82	10	73	52	3	3	40	1.35
16528850--16528969	15	7.2	16	69	21	79	52	32	0	15	1.43
16528850--16528969	31	3.7	32	75	16	106	52	32	0	15	1.43
16528998--16529051	16	3.5	16	73	16	51	48	37	0	14	1.45
16537076--16537648	33	17.5	33	83	5	619	28	20	16	33	1.95
16537077--16537679	98	6.1	97	81	7	621	29	20	16	33	1.94
16537076--16537679	131	4.6	130	81	5	666	29	20	16	33	1.94
16538382--16538439	21	2.6	22	86	8	82	31	29	17	22	1.96
16538554--16538616	21	3.0	21	75	13	65	26	19	19	34	1.95
16538562--16538665	22	4.7	22	68	17	63	28	19	18	33	1.95
16538738--16538801	23	2.9	23	77	13	71	31	21	18	28	1.97
16538580--16538901	154	2.1	153	81	4	378	26	19	16	37	1.92
16538885--16538935	23	2.2	23	89	0	75	27	19	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16538757--16539054	133	2.2	133	86	4	397	24	20	18	37	1.94
16539067--16539718	73	9.1	73	77	6	550	20	22	13	43	1.87
16539111--16539220	35	3.1	36	74	10	100	21	27	11	39	1.88
16539127--16539235	35	3.0	34	70	12	92	22	23	11	42	1.86
16539076--16539718	142	4.5	141	77	9	582	20	23	13	43	1.87
16539111--16539718	215	2.8	217	81	5	692	20	23	13	43	1.87
16539656--16539732	35	2.1	37	81	11	88	12	28	16	41	1.86
16539980--16540018	21	1.9	21	84	5	53	58	0	0	41	0.98
16539969--16540026	31	1.9	29	82	6	71	60	0	0	39	0.97
16541334--16541445	16	6.9	16	78	9	84	46	31	2	19	1.64
16541335--16541431	32	2.9	33	86	4	133	45	31	3	19	1.66
16547684--16547725	21	2.0	21	100	0	84	14	23	14	47	1.80
16548774--16548811	2	19.5	2	94	5	69	52	0	0	47	1.00
16548862--16548899	2	19.5	2	94	5	69	50	0	0	50	1.00
16549074--16549113	2	20.0	2	94	0	71	47	0	2	50	1.14
16551020--16551099	39	2.1	39	92	0	133	20	27	31	21	1.98
16556863--16556938	17	4.2	17	71	24	50	53	1	0	44	1.08
16556941--16557028	21	4.2	20	72	13	61	45	2	0	52	1.13
16556999--16557036	17	2.2	17	95	0	67	42	0	0	57	0.98
16556946--16557023	21	3.5	22	73	15	72	43	2	0	53	1.14
16556993--16557033	17	2.6	15	82	14	55	43	0	0	56	0.99
16561753--16561791	21	1.9	21	84	5	53	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16561742--16561799	31	1.9	29	82	6	71	60	0	0	39	0.97
16563249--16563335	16	5.2	16	80	6	93	50	33	1	14	1.51
16563248--16563337	34	2.7	34	78	8	105	48	33	1	16	1.54
16563305--16563413	45	2.4	45	80	4	121	44	34	0	20	1.51
16571406--16571978	33	17.5	33	83	5	619	28	20	16	33	1.95
16571407--16572009	98	6.1	97	81	7	621	29	20	16	33	1.94
16571406--16572009	131	4.6	130	81	5	666	29	20	16	33	1.94
16572714--16572789	22	3.5	22	89	3	100	31	26	17	25	1.97
16572710--16572819	22	5.0	21	78	8	85	30	25	17	26	1.97
16572884--16572946	21	3.0	21	75	13	65	26	19	19	34	1.95
16572892--16572995	22	4.7	22	71	17	72	27	19	19	33	1.96
16572910--16573231	154	2.1	153	83	4	396	26	19	16	37	1.93
16573068--16573131	23	2.9	23	77	13	71	31	21	18	28	1.97
16573215--16573265	23	2.2	23	89	0	75	27	19	19	33	1.96
16573396--16574046	73	9.1	73	76	7	523	20	22	13	43	1.86
16573433--16573529	38	2.6	37	75	4	99	20	28	13	37	1.91
16573395--16573575	34	5.2	33	63	10	83	21	23	12	43	1.86
16573452--16574046	215	2.7	214	80	4	575	20	22	13	43	1.86
16574308--16574346	21	1.9	21	84	5	53	58	0	0	41	0.98
16574297--16574354	31	1.9	29	82	6	71	60	0	0	39	0.97
16575673--16575761	17	5.4	17	78	15	96	46	31	3	19	1.66
16575676--16575779	16	6.3	17	77	15	94	46	33	2	17	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16575667--16575772	33	3.2	32	88	5	149	45	33	2	17	1.64
16575742--16575785	17	2.7	16	85	3	52	52	34	2	11	1.50
16584076--16584195	2	60.0	2	83	0	141	41	0	6	51	1.28
16584076--16584193	38	3.1	38	92	0	191	41	0	6	51	1.28
16584183--16584296	57	2.0	57	94	0	201	35	8	18	36	1.82
16585003--16585045	16	2.5	18	85	7	63	39	0	0	60	0.97
16584991--16585045	16	3.4	16	80	11	58	36	0	0	63	0.95
16585039--16585083	20	2.2	20	92	7	74	46	0	2	51	1.13
16585748--16585788	11	3.8	11	87	3	57	43	0	4	51	1.23
16585803--16585865	13	4.4	14	75	23	60	36	0	0	63	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130