genome.fa.s556.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  26  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6715040--6715081	18	2.5	17	81	11	50	7	14	0	78	0.95
6725462--6725496	7	4.9	7	96	3	61	88	0	0	11	0.51
6726496--6726634	41	3.4	41	86	4	190	28	12	16	41	1.85
6726496--6726658	82	2.0	82	87	2	238	28	12	17	41	1.87
6726534--6726658	41	3.0	41	74	14	130	28	12	18	41	1.86
6726505--6726702	83	2.4	84	81	10	214	28	14	18	38	1.90
6726673--6726830	45	3.5	44	86	2	208	24	13	18	43	1.86
6727054--6727103	17	2.9	17	85	8	66	18	0	6	76	0.99
6727534--6727581	20	2.4	19	93	3	78	16	14	14	54	1.72
6727986--6728017	6	5.7	6	85	14	50	25	0	0	75	0.81
6727980--6728018	10	3.7	10	83	12	51	25	2	0	71	0.98
6728035--6728413	60	6.3	58	77	16	324	49	3	8	37	1.53
6728113--6728413	128	2.4	129	85	8	419	48	3	9	37	1.54
6728336--6728378	15	2.8	15	83	13	52	62	0	4	32	1.15
6728256--6728454	60	3.4	58	82	10	176	49	5	8	37	1.54
6739741--6739797	27	2.1	28	86	3	80	33	5	15	45	1.69
6742650--6742900	126	2.0	126	81	9	291	41	11	7	39	1.70
6743696--6743728	5	6.6	5	100	0	66	36	0	0	63	0.95
6743748--6743874	3	41.0	3	72	18	75	28	3	1	66	1.19
6743761--6743864	43	2.4	41	79	16	111	27	4	0	66	1.18
6743852--6743877	6	4.3	6	100	0	52	15	0	0	84	0.62
6744109--6744160	22	2.3	23	80	9	63	34	0	15	50	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6744109--6744175	11	6.1	11	70	6	55	35	0	11	52	1.39
6744611--6744702	3	30.0	3	91	4	148	32	3	1	63	1.18
6744719--6744752	10	3.1	11	91	8	52	17	2	0	79	0.86
6744763--6744993	57	4.0	58	82	6	274	43	6	12	37	1.69
6744763--6744993	116	2.0	114	85	6	306	43	6	12	37	1.69
6747181--6747219	11	3.4	11	83	13	51	30	0	0	69	0.89
6749187--6749238	16	3.3	16	75	2	61	36	3	7	51	1.49
6749171--6749238	32	2.2	32	81	10	86	35	4	10	50	1.57
6750063--6750089	6	4.5	6	100	0	54	14	33	18	33	1.92
6753718--6753743	2	13.0	2	100	0	52	50	0	0	50	1.00
6754710--6754777	23	2.9	23	72	23	61	29	0	2	67	1.05
6754719--6754775	21	2.7	21	81	13	55	28	0	3	68	1.06
6755339--6755417	34	2.3	34	81	16	92	69	8	0	21	1.15
6756524--6756966	40	11.2	40	79	5	359	42	18	11	27	1.85
6756487--6757004	78	6.7	78	79	6	428	42	18	11	27	1.85
6756524--6756966	118	3.7	117	82	4	532	42	18	11	27	1.85
6756927--6756998	33	2.2	33	84	0	90	38	20	13	26	1.90
6764908--6765229	168	1.9	168	88	0	491	26	19	12	42	1.86
6769823--6769851	3	9.7	3	100	0	58	65	0	0	34	0.93
6769858--6769893	18	1.9	19	94	5	65	72	8	0	19	1.10
6770217--6770328	52	2.1	53	81	4	129	42	17	8	30	1.80
6776298--6776354	28	2.0	28	100	0	114	29	14	17	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6783037--6783071	3	11.7	3	93	0	61	62	0	2	34	1.10
6784821--6784902	42	2.0	41	83	7	103	43	3	9	42	1.55
6786682--6786739	3	19.3	3	100	0	116	67	0	0	32	0.91
6788274--6788321	21	2.2	22	85	10	64	52	6	0	41	1.27
6789031--6789055	13	1.9	13	100	0	50	72	0	0	28	0.86
6815519--6815567	26	1.9	26	87	4	73	40	4	0	55	1.19
6815519--6815586	23	2.8	25	82	8	77	45	2	1	50	1.26
6815545--6815600	23	2.3	23	84	9	67	44	3	3	48	1.37
6820062--6820315	122	2.1	122	82	3	303	37	12	7	42	1.73
6821348--6821544	109	1.8	109	87	2	297	34	16	21	27	1.95
6840609--6840633	11	2.3	11	100	0	50	48	16	36	0	1.46
6841655--6842040	145	2.7	146	84	3	478	46	11	11	31	1.75
6850071--6850096	13	2.0	13	100	0	52	0	0	7	92	0.39
6850074--6850098	12	2.1	12	100	0	50	0	0	8	92	0.40
6851347--6851393	22	2.1	22	100	0	94	31	27	4	36	1.76
6853082--6853128	6	8.0	6	78	4	51	70	0	0	29	0.88
6853082--6853128	17	2.7	18	86	6	69	70	0	0	29	0.88
6853082--6853135	17	3.1	17	84	7	65	70	0	1	27	0.98
6853300--6853382	30	2.8	29	78	12	80	42	4	0	53	1.22
6853366--6853452	25	3.7	25	79	10	85	41	5	1	51	1.33
6859133--6859226	20	4.3	20	66	29	50	45	1	0	53	1.07
6859189--6859251	23	2.9	21	72	19	56	49	1	0	49	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6859377--6859415	6	6.7	6	91	5	62	66	2	0	30	1.05
6859677--6859740	25	2.7	24	85	9	78	40	7	3	48	1.48
6859687--6859740	25	2.1	26	89	3	83	38	5	3	51	1.43
6859697--6859750	25	2.1	25	86	3	72	46	7	5	40	1.55
6861423--6861483	20	3.0	20	87	0	95	50	27	0	21	1.49
6870532--6870592	31	2.0	31	83	3	79	44	0	1	54	1.10
6870587--6870630	21	2.0	21	83	12	54	56	2	0	40	1.11
6873462--6873492	7	4.4	7	100	0	62	45	12	29	12	1.80
6874348--6874504	52	3.0	52	87	0	197	25	25	8	40	1.84
6874790--6874917	25	5.1	25	72	5	89	19	35	7	37	1.81
6874802--6874917	50	2.3	50	82	2	135	19	33	8	37	1.83
6875484--6875606	52	2.4	52	87	2	158	25	20	9	44	1.82
6875579--6875611	14	2.4	14	94	0	57	12	18	15	54	1.71
6875631--6875672	11	3.8	11	93	0	75	50	28	0	21	1.49
6875631--6875673	22	2.0	22	100	0	86	48	27	0	23	1.51
6875913--6876040	25	5.1	25	71	3	96	18	34	8	38	1.82
6875925--6876040	50	2.3	50	86	2	153	18	32	9	38	1.83
6876606--6876735	52	2.5	52	80	3	147	25	23	8	43	1.82
6876760--6876790	11	2.8	11	100	0	62	51	29	0	19	1.47
6878253--6878290	16	2.3	17	86	4	51	21	21	10	47	1.80
6878346--6878392	20	2.3	21	85	14	71	31	14	8	44	1.76
6883989--6884035	22	2.1	22	81	14	53	55	2	0	42	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6884155--6884200	17	2.6	18	82	6	58	67	2	0	30	1.03
6884125--6884181	12	4.8	12	72	8	53	66	0	0	33	0.92
6884125--6884193	36	1.9	36	81	0	84	65	1	0	33	1.02
6884453--6884516	25	2.6	25	87	4	87	40	7	1	50	1.41
6884473--6884526	25	2.2	25	86	0	72	42	7	7	42	1.61
6891177--6891209	16	2.1	16	94	0	57	30	18	9	42	1.81
6891858--6892600	383	1.9	379	78	8	781	35	12	10	41	1.77
6898878--6898930	23	2.3	23	81	12	56	75	3	16	3	1.10
6903537--6903577	21	1.9	22	85	5	57	24	0	19	56	1.42
6903523--6903696	15	11.3	15	68	16	81	21	0	26	51	1.52
6903579--6903697	30	4.0	30	78	5	118	22	0	27	48	1.56
6905663--6905934	88	3.1	87	80	7	287	45	18	15	20	1.86
6905839--6906044	110	1.9	110	91	2	342	43	21	16	18	1.88
6905757--6906241	198	2.4	198	83	3	573	45	18	15	19	1.86
6905952--6906120	88	1.9	88	87	2	250	46	21	14	17	1.84
6906026--6906263	109	2.2	109	80	9	272	43	18	15	22	1.88
6906220--6906273	22	2.5	21	88	8	81	31	14	24	29	1.95
6906126--6906488	132	2.8	132	79	2	365	40	16	19	23	1.91
6906397--6906666	88	3.1	87	82	3	292	46	14	14	25	1.82
6906442--6906680	87	2.7	88	83	3	277	45	13	15	25	1.83
6906659--6906729	21	3.2	22	76	6	72	35	15	19	29	1.93
6906605--6906942	131	2.6	130	81	6	387	39	15	19	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6906150--6907016	438	2.0	438	81	4	1041	41	16	18	23	1.90
6906802--6906855	22	2.5	22	84	6	74	24	16	29	29	1.97
6906844--6907035	87	2.2	88	85	3	255	41	16	19	22	1.90
6907008--6907058	22	2.3	23	82	6	68	37	13	15	33	1.87
6907239--6907672	128	3.4	128	83	3	527	34	16	15	32	1.91
6907956--6908016	26	2.3	26	80	5	79	32	16	18	32	1.93
6909048--6909072	13	1.9	13	100	0	50	8	20	0	72	1.10
6910132--6910161	14	2.2	14	94	5	53	0	0	13	86	0.57
6914377--6914413	18	2.0	19	94	5	67	21	5	5	67	1.31
6916198--6916312	30	3.9	29	78	7	126	20	0	28	49	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130