genome.fa.s556.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  25  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6463820--6463871	25	2.1	25	89	7	79	23	32	3	40	1.72
6463824--6463902	25	3.2	24	80	7	70	21	32	6	39	1.79
6466444--6466480	18	2.1	18	94	0	65	40	0	0	59	0.97
6466560--6466606	24	2.0	24	87	8	69	40	0	0	59	0.97
6467332--6467388	21	2.8	21	78	7	55	15	0	17	66	1.25
6472783--6472812	15	2.0	15	93	0	51	13	3	0	83	0.77
6473424--6473477	27	2.0	27	82	13	67	50	1	14	33	1.54
6478847--6478889	22	2.0	22	85	0	59	74	4	6	13	1.19
6482678--6482818	48	2.9	48	79	7	133	30	36	15	17	1.91
6487186--6487284	15	6.6	15	68	22	57	46	1	2	50	1.19
6494938--6495044	56	1.9	57	86	1	153	32	10	13	43	1.77
6502587--6502616	13	2.3	13	94	0	51	40	0	20	40	1.52
6504673--6504727	22	2.5	22	82	8	60	43	0	3	52	1.18
6504639--6504715	36	2.2	36	81	6	86	41	2	3	51	1.34
6504756--6504791	17	2.2	17	90	5	56	25	0	0	75	0.81
6512872--6512920	21	2.4	21	83	13	66	6	22	2	69	1.21
6517517--6517832	160	2.0	161	94	0	553	37	15	11	35	1.83
6517840--6517880	17	2.5	17	88	4	57	73	9	0	17	1.09
6518211--6518272	15	4.4	14	81	6	63	3	19	3	74	1.10
6518220--6518271	21	2.5	21	83	0	68	1	19	3	75	1.06
6521802--6521837	15	2.4	16	82	17	51	25	0	2	72	0.98
6522351--6522392	3	14.7	3	85	9	61	66	2	0	30	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6522425--6522463	12	3.2	12	89	10	53	82	0	7	10	0.86
6522425--6522463	13	3.2	13	85	10	55	82	0	7	10	0.86
6522742--6522779	19	2.0	19	94	0	67	55	21	7	15	1.66
6523492--6523663	40	4.4	39	81	5	177	45	16	11	26	1.81
6523488--6523663	79	2.2	78	80	3	208	46	15	11	26	1.80
6523857--6523942	40	2.2	39	83	6	102	39	20	12	26	1.89
6529067--6529145	39	2.0	39	90	0	122	32	15	13	37	1.87
6530910--6530969	33	1.9	33	83	10	81	40	0	6	53	1.27
6531344--6531377	17	1.9	18	88	5	52	20	5	0	73	1.04
6533079--6533142	20	3.3	18	75	14	56	57	0	1	40	1.08
6533090--6533142	20	2.7	19	82	11	63	64	0	0	35	0.94
6533707--6534215	253	2.0	252	93	0	874	32	21	17	28	1.96
6534870--6535018	30	5.0	30	76	10	114	58	2	2	36	1.24
6534870--6534999	60	2.2	59	81	9	140	56	2	2	38	1.24
6538053--6538087	10	3.4	10	84	7	52	74	0	25	0	0.82
6545932--6546157	120	1.9	120	89	0	353	38	15	9	36	1.81
6569495--6569547	27	1.9	27	84	3	70	62	0	1	35	1.06
6578047--6579299	333	3.8	332	86	2	1628	36	14	11	37	1.82
6585774--6585801	2	14.0	2	100	0	56	50	0	0	50	1.00
6587424--6587452	2	14.5	2	100	0	58	48	0	0	51	1.00
6588163--6588200	20	1.9	20	88	0	58	39	7	2	50	1.46
6588201--6588260	17	3.6	16	78	8	66	43	3	1	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6589206--6589257	27	1.9	27	84	7	70	51	0	5	42	1.25
6589296--6589347	27	1.9	27	85	14	72	48	0	0	51	1.00
6589333--6589379	16	3.0	15	81	9	58	46	2	0	51	1.13
6589378--6589404	8	3.4	8	100	0	54	37	0	0	62	0.95
6590850--6590910	26	2.4	25	81	10	70	40	0	3	55	1.16
6592442--6592646	72	2.8	70	80	5	221	47	2	6	43	1.43
6592976--6593045	37	1.9	37	85	5	99	50	5	1	42	1.35
6595019--6595078	23	2.6	23	84	12	79	51	0	0	48	1.00
6595066--6595101	13	2.7	13	86	4	54	55	0	0	44	0.99
6595698--6595725	2	14.0	2	100	0	56	50	0	0	50	1.00
6597926--6597957	2	16.0	2	93	0	55	50	3	0	46	1.17
6598579--6598612	12	2.9	11	91	8	50	55	0	0	44	0.99
6598783--6598821	18	2.1	19	85	4	53	30	10	5	53	1.56
6598999--6599029	2	15.5	2	100	0	62	51	0	0	48	1.00
6599374--6599405	10	3.0	11	90	9	57	53	0	0	46	1.00
6613571--6614126	145	3.8	146	79	7	535	29	12	15	42	1.83
6617572--6617651	38	2.1	37	81	6	90	37	20	8	33	1.83
6618817--6618860	23	1.9	23	86	9	63	45	4	4	45	1.44
6620253--6620291	20	2.0	20	94	0	69	30	23	20	25	1.98
6620506--6621047	145	3.7	145	80	7	535	38	13	16	31	1.87
6620506--6621047	290	1.9	290	80	5	648	38	13	16	31	1.87
6624447--6624482	6	6.0	6	96	0	63	30	36	16	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6624670--6624702	16	2.1	16	100	0	66	30	9	36	24	1.86
6633643--6633697	26	2.2	25	83	9	67	76	1	10	10	1.10
6635080--6635112	6	5.5	6	100	0	66	15	18	36	30	1.91
6648710--6648754	13	3.5	13	81	0	54	2	11	2	84	0.80
6651990--6652029	17	2.4	17	100	0	80	25	37	10	27	1.88
6653381--6653438	20	2.8	21	81	2	73	68	8	1	20	1.25
6653370--6653438	21	3.3	20	76	6	75	69	7	1	21	1.21
6656679--6656717	20	2.0	20	94	0	69	43	7	15	33	1.75
6656823--6656868	19	2.4	19	82	7	58	71	2	13	13	1.23
6658428--6658458	14	2.3	14	94	5	55	22	6	6	64	1.40
6660125--6660263	69	2.0	69	94	0	242	44	11	15	28	1.81
6660829--6660958	65	2.0	65	95	0	233	40	14	13	31	1.84
6664259--6664323	10	6.1	10	80	18	53	83	9	1	6	0.88
6664253--6664332	35	2.3	35	87	4	110	81	8	2	7	0.96
6665129--6665177	16	2.8	17	75	12	55	22	0	2	75	0.90
6665445--6665493	16	3.1	16	77	14	57	55	2	2	40	1.23
6665453--6665490	15	2.5	15	83	8	51	63	0	2	34	1.09
6665596--6665658	30	2.1	30	85	8	85	50	25	0	23	1.49
6665596--6665665	29	2.4	30	81	11	83	50	27	0	22	1.50
6672290--6672324	16	2.2	16	90	5	54	42	8	5	42	1.59
6677376--6677428	17	3.0	18	77	5	63	30	1	5	62	1.29
6681011--6681046	15	2.5	14	86	8	54	88	5	0	5	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6682116--6682905	109	7.2	109	85	2	1023	20	19	13	47	1.82
6682885--6683292	102	4.0	102	89	1	600	21	16	12	49	1.79
6682878--6683258	34	11.1	34	69	8	198	21	17	12	49	1.79
6683196--6683584	175	2.2	175	88	0	573	21	18	12	47	1.81
6683950--6684012	29	2.2	28	85	2	90	74	9	3	12	1.17
6683967--6684006	17	2.2	19	91	8	66	75	12	0	12	1.06
6683993--6684031	12	3.3	12	85	3	53	82	5	5	7	0.96
6683958--6684009	10	5.3	10	76	21	56	76	9	1	11	1.09
6683958--6684031	10	7.2	10	73	14	53	77	8	4	10	1.12
6684368--6684414	19	2.5	18	86	6	58	70	8	8	12	1.34
6685489--6685557	29	2.4	28	80	9	75	47	28	0	23	1.52
6685500--6685561	30	2.1	30	87	6	90	45	27	0	27	1.54
6685486--6685543	22	2.5	24	75	16	59	48	27	0	24	1.51
6688043--6688099	15	3.6	15	81	9	51	78	0	17	3	0.88
6692066--6692137	11	6.3	11	74	19	58	34	2	2	59	1.26
6693038--6693070	16	2.1	16	100	0	66	30	12	24	33	1.91
6695730--6695769	21	1.9	21	89	0	62	15	15	10	60	1.60
6698986--6699013	7	4.0	7	100	0	56	71	0	14	14	1.15
6702226--6702307	37	2.2	36	84	2	101	25	10	7	56	1.60
6702294--6702496	72	2.8	72	78	8	182	31	18	5	44	1.72
6702265--6702535	36	7.5	36	69	12	135	30	16	4	47	1.67
6702533--6702832	48	6.3	47	72	13	168	27	16	5	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6702684--6702873	48	4.0	46	71	15	125	28	15	3	52	1.60
6702511--6702859	94	3.7	93	75	11	316	26	15	5	51	1.66
6703497--6703538	15	2.8	15	85	7	59	42	26	7	23	1.80
6708601--6708697	43	2.3	42	82	7	124	23	7	19	49	1.73
6708664--6708717	21	2.6	21	80	16	67	31	9	18	40	1.82
6709747--6709781	17	2.0	18	88	5	54	48	0	2	48	1.16
6713811--6713873	17	3.5	17	78	6	63	19	3	3	74	1.09
6714670--6714707	3	12.7	3	100	0	76	31	0	0	68	0.90
6714742--6714775	6	5.7	6	100	0	68	29	0	0	70	0.87
6714792--6714922	61	2.2	60	87	6	185	52	6	9	32	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130