Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  85  of  130  ( 15485 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16793334--16793385
20
2.6
20
81
6
61
76
3
9
9
1.12
16794318--16794445
46
2.7
46
85
4
148
50
6
11
31
1.63
16800040--16800382
169
2.0
174
92
2
579
43
13
15
27
1.84
16809761--16809859
25
3.8
24
80
9
81
15
9
4
71
1.26
16809773--16809817
15
3.2
15
75
18
51
13
11
2
73
1.19
16809790--16809859
16
4.2
17
76
18
67
14
10
1
74
1.14
16809795--16809847
19
2.7
20
88
5
72
15
11
0
73
1.09
16809773--16809907
68
2.0
70
81
11
163
15
8
4
71
1.28
16810762--16810787
13
2.0
13
100
0
52
61
0
0
38
0.96
16810844--16810870
11
2.5
11
100
0
54
0
7
0
92
0.38
16818802--16818848
15
3.1
15
87
6
60
29
8
14
46
1.74
16820176--16820236
32
1.9
32
86
6
88
11
18
19
50
1.76
16820260--16820321
32
1.9
32
86
0
88
19
20
14
45
1.85
16820266--16820331
32
2.1
32
82
0
78
18
24
15
42
1.88
16821213--16821248
16
2.2
16
90
0
54
41
2
0
55
1.14
16821256--16821314
12
5.2
11
75
18
50
69
3
3
23
1.19
16822494--16822530
19
1.9
19
89
10
58
43
8
13
35
1.74
16822651--16822776
18
7.4
16
77
12
101
42
16
11
29
1.84
16822664--16822776
34
3.3
34
82
1
136
43
15
12
28
1.83
16822804--16822882
17
4.6
17
72
12
63
30
13
20
35
1.92
16822852--16822899
17
2.8
17
81
9
53
41
12
20
25
1.87
16823080--16823219
46
3.0
46
78
6
158
41
15
8
35
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16827094--16827133
21
1.9
21
89
0
62
65
10
0
25
1.24
16829153--16829217
33
2.0
33
87
0
94
33
15
7
43
1.75
16829483--16829507
7
3.6
7
100
0
50
28
0
0
72
0.86
16829578--16829624
19
2.4
19
85
7
67
14
12
0
72
1.13
16829578--16829619
19
2.2
20
91
4
68
14
11
0
73
1.09
16830382--16830516
52
2.8
47
77
15
125
51
8
5
33
1.57
16830418--16830516
52
1.9
51
87
6
146
55
8
5
31
1.51
16830496--16830537
21
2.0
21
86
9
59
50
0
11
38
1.40
16832017--16832239
114
2.0
113
83
2
286
36
11
17
34
1.86
16833744--16834562
408
2.0
408
99
0
1629
35
13
14
36
1.85
16834635--16834751
62
1.9
62
84
10
159
28
16
15
40
1.88
16837094--16837130
3
12.3
3
94
0
65
67
2
0
29
1.04
16837375--16837405
3
10.3
3
100
0
62
64
0
0
35
0.94
16841777--16841839
23
2.6
25
80
12
60
28
4
0
66
1.12
16842195--16842229
15
2.3
15
90
5
52
37
14
8
40
1.76
16842297--16842347
19
2.5
21
87
9
70
72
0
1
25
0.95
16842297--16842357
22
3.0
20
83
11
70
67
0
3
29
1.07
16843158--16843227
33
2.2
33
85
10
92
34
0
2
62
1.10
16848278--16848306
10
2.9
10
100
0
58
10
27
10
51
1.68
16852211--16852491
154
1.8
153
81
6
354
38
11
9
39
1.75
16852505--16852748
62
3.9
61
73
6
179
48
9
8
34
1.65
16853399--16853424
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16861092--16861307
111
1.9
111
86
3
310
35
20
18
25
1.96
16864490--16864515
13
2.0
13
100
0
52
15
0
0
84
0.62
16864495--16864549
28
2.0
28
88
0
83
34
1
1
61
1.17
16864502--16864556
28
2.0
27
82
6
67
38
1
1
58
1.20
16868400--16868436
12
3.2
12
85
11
51
43
0
0
56
0.99
16869199--16869241
22
2.0
21
86
9
59
65
18
9
6
1.44
16869842--16869882
4
10.2
4
84
10
57
24
0
2
73
0.96
16871278--16871304
9
3.0
9
100
0
54
88
0
0
11
0.50
16871333--16871718
58
6.7
57
85
7
510
35
12
7
44
1.70
16871734--16871839
5
20.6
5
69
22
60
77
1
4
16
1.03
16871733--16871818
30
2.9
29
80
13
95
77
2
5
13
1.04
16871412--16871748
118
2.9
114
86
6
297
37
10
6
44
1.66
16871734--16871826
6
15.7
6
68
17
52
78
2
5
13
1.02
16871734--16871826
17
5.6
16
73
11
64
78
2
5
13
1.02
16872693--16872755
27
2.2
28
86
10
85
71
6
1
20
1.16
16872693--16872735
18
2.4
18
84
0
59
72
6
2
18
1.19
16872719--16872775
20
2.8
21
82
12
75
70
5
0
24
1.08
16872920--16872966
3
15.7
3
86
8
69
70
2
0
27
0.99
16872958--16873004
6
7.8
6
80
15
53
70
0
2
27
0.99
16872959--16873006
25
1.9
25
100
0
96
70
0
2
27
0.98
16872920--16873028
12
9.5
11
77
13
80
72
0
1
24
1.00
16872926--16873028
16
6.4
14
70
22
53
72
0
1
24
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16873202--16873371
41
4.1
41
84
4
171
35
23
17
23
1.95
16874380--16874437
8
7.1
8
82
9
64
6
10
1
81
0.95
16874381--16874438
16
3.6
16
86
6
73
8
8
1
81
0.96
16874376--16874438
24
2.5
25
84
7
83
9
11
1
77
1.05
16881672--16881702
16
2.0
16
93
6
55
54
6
19
19
1.65
16884848--16885343
57
8.6
56
81
8
559
36
13
6
43
1.70
16885375--16885445
21
3.3
21
75
18
65
77
2
5
14
1.06
16885365--16885445
11
7.2
11
72
10
56
77
2
4
14
1.04
16885370--16885434
21
3.0
20
84
13
67
78
3
6
12
1.05
16885427--16885466
11
3.7
11
83
6
55
72
0
2
25
0.97
16886324--16886357
18
1.9
18
94
5
61
64
5
2
26
1.30
16886480--16886583
6
16.5
6
74
18
79
75
1
2
19
1.02
16886512--16886582
19
3.8
18
87
9
83
77
1
2
18
0.97
16886480--16886583
39
2.7
39
79
10
106
75
1
2
19
1.02
16889785--16889853
33
2.1
33
100
0
138
40
5
24
28
1.78
16890494--16890533
9
4.3
9
83
3
53
85
0
10
5
0.75
16891119--16891316
79
2.5
79
87
1
299
34
8
25
31
1.85
16892035--16892723
44
15.8
44
78
6
598
25
11
14
47
1.78
16892035--16892723
87
7.9
86
81
6
615
25
11
14
47
1.78
16892028--16892702
43
15.6
42
75
8
378
26
11
14
47
1.79
16893283--16893320
20
1.9
20
84
10
51
10
10
2
76
1.12
16897826--16897889
25
2.6
25
71
14
60
62
0
0
37
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16899382--16899433
17
2.9
17
77
11
52
53
1
0
44
1.11
16899611--16899693
32
2.8
29
75
20
73
33
6
12
48
1.65
16899620--16899693
32
2.4
30
86
11
96
31
6
13
48
1.68
16900121--16900184
22
2.7
24
76
9
60
20
7
3
68
1.28
16901338--16901387
16
3.1
16
83
11
50
50
2
2
46
1.24
16902599--16902643
22
2.0
22
100
0
90
46
22
8
22
1.79
16902887--16902933
3
15.7
3
100
0
94
34
0
0
65
0.93
16908296--16908333
19
2.0
19
94
0
67
47
15
7
28
1.74
16910170--16910212
19
2.2
20
79
12
52
23
18
16
41
1.89
16910199--16910256
16
3.6
16
79
11
73
27
24
18
29
1.98
16910180--16910258
33
2.3
34
91
8
126
25
24
20
30
1.98
16910199--16910272
16
4.5
17
80
14
66
28
25
18
27
1.98
16910180--16910272
33
2.8
33
87
9
100
26
24
19
29
1.98
16911568--16911605
20
1.9
20
88
0
58
78
2
2
15
0.97
16911621--16911664
19
2.3
19
88
7
63
65
2
9
22
1.32
16922873--16922912
3
13.3
3
100
0
80
32
0
0
67
0.91
16925951--16926186
35
6.6
34
71
11
132
50
9
19
20
1.75
16925924--16926082
69
2.3
69
79
5
169
47
8
22
21
1.77
16926131--16926255
35
3.5
35
73
5
108
51
8
18
21
1.73
16926274--16926354
35
2.3
35
84
0
99
48
12
19
19
1.80
16926437--16926521
35
2.4
36
82
5
102
44
5
21
28
1.75
16926587--16926673
35
2.5
36
81
3
97
55
11
14
18
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16944129--16944230
51
2.0
52
94
1
179
27
18
7
46
1.77
16948234--16948282
22
2.2
23
85
3
64
53
0
2
44
1.12
16948523--16948547
12
2.1
12
100
0
50
44
0
0
56
0.99
16949396--16949443
24
2.0
24
83
0
60
10
12
2
75
1.14
16951173--16951363
44
4.3
44
68
13
142
33
4
15
46
1.66
16951333--16951391
22
2.6
22
72
2
55
35
5
11
47
1.62
16951444--16951490
21
2.1
23
85
14
64
40
0
6
53
1.27
16951610--16951656
17
2.8
17
87
6
60
27
19
17
36
1.93
16951866--16951913
17
2.9
17
78
3
53
29
12
22
35
1.91
16953868--16953915
18
2.8
17
90
6
78
31
0
12
56
1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130