genome.fa.s556.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  40  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9704369--9704462	39	2.5	39	82	3	102	13	1	38	46	1.51
9704505--9704567	26	2.5	26	79	7	67	14	0	38	47	1.44
9704536--9704578	19	2.2	19	95	4	77	9	0	39	51	1.34
9704505--9704641	71	1.9	71	80	5	161	16	1	34	47	1.56
9707199--9707259	26	2.3	26	86	5	79	54	18	3	24	1.58
9707219--9707259	12	3.2	12	80	12	55	53	14	4	26	1.61
9707219--9707327	26	4.2	25	77	14	87	47	18	9	24	1.77
9713274--9713311	20	1.9	20	94	0	67	21	7	21	50	1.74
9713578--9713765	103	1.8	102	83	3	252	31	15	18	34	1.92
9714339--9714597	62	4.2	63	77	6	215	32	14	12	40	1.84
9716680--9716730	22	2.3	22	87	12	70	74	1	23	0	0.92
9717221--9717257	18	2.0	19	94	5	67	70	0	24	5	1.08
9717617--9717930	33	9.6	33	69	7	165	34	16	16	31	1.92
9717623--9717841	32	6.7	32	72	7	136	36	15	15	31	1.90
9717607--9717841	65	3.6	65	76	6	197	36	16	16	31	1.91
9717970--9718057	23	3.9	23	75	8	72	35	15	20	28	1.94
9718240--9718329	35	2.6	35	80	3	101	16	22	10	51	1.74
9718310--9718434	35	3.6	35	75	13	105	20	18	8	52	1.71
9718655--9718921	35	7.6	35	70	7	110	16	20	11	51	1.75
9719161--9719332	35	4.9	35	73	0	137	20	20	7	51	1.71
9719142--9719332	70	2.7	70	77	0	193	20	21	6	50	1.71
9721991--9722103	51	2.2	52	85	1	156	51	19	8	20	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9722091--9722154	13	5.0	13	84	7	87	48	21	6	23	1.73
9721991--9722135	51	2.8	51	82	3	148	51	19	8	21	1.73
9721981--9722165	26	7.1	26	80	4	151	50	21	7	21	1.72
9722092--9722165	38	1.9	39	86	8	107	48	24	5	21	1.71
9721974--9722154	77	2.3	76	77	7	195	50	19	7	22	1.72
9723110--9723513	59	6.7	59	84	7	483	33	14	7	44	1.73
9723523--9723607	5	17.6	5	76	18	74	80	2	3	14	0.95
9723522--9723607	31	2.9	30	81	11	106	79	2	4	13	1.00
9723528--9723614	29	2.9	28	84	6	93	78	2	5	13	1.03
9723641--9723702	32	2.0	30	87	9	90	80	1	0	17	0.79
9724029--9724069	20	2.0	20	95	0	73	21	14	14	48	1.80
9724567--9724649	22	3.8	22	75	22	68	68	6	6	19	1.32
9724567--9724637	20	3.4	20	75	17	63	70	5	5	18	1.27
9724561--9724663	43	2.4	42	80	16	104	68	5	4	20	1.29
9724645--9724704	22	2.7	22	82	10	70	65	1	0	33	1.03
9725108--9725297	41	4.4	42	83	9	204	38	18	15	26	1.91
9725033--9725294	43	6.1	41	79	11	222	38	20	15	25	1.91
9735302--9735751	59	7.7	58	83	8	554	34	12	7	45	1.70
9735768--9735852	5	17.6	5	71	18	56	77	2	4	15	1.03
9736758--9736903	20	7.2	19	71	16	80	69	4	5	20	1.25
9736810--9736854	22	2.0	22	100	0	90	64	0	8	26	1.23
9736889--9736936	22	2.2	22	85	7	62	62	2	0	35	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9738058--9738310	50	5.1	50	74	9	212	41	14	13	30	1.84
9739056--9739104	19	2.6	19	93	0	80	22	22	0	55	1.44
9739074--9739136	24	2.5	26	80	15	69	20	23	0	55	1.43
9739425--9739460	10	3.6	10	88	0	54	50	13	8	27	1.71
9739405--9739460	20	2.8	20	81	5	60	50	12	8	28	1.70
9741550--9741619	26	2.7	26	75	0	77	50	28	2	18	1.61
9741563--9741605	13	3.3	13	83	0	50	48	37	0	13	1.43
9741629--9741681	22	2.5	22	81	9	65	47	30	1	20	1.61
9741849--9741888	17	2.3	19	79	16	50	52	2	7	37	1.43
9749896--9749932	15	2.5	15	100	0	74	8	16	21	54	1.68
9749663--9753965	855	5.0	856	94	0	7585	30	17	12	38	1.88
9759853--9759881	2	14.5	2	100	0	58	51	0	0	48	1.00
9762317--9762401	43	2.0	43	83	2	109	52	8	10	28	1.64
9771151--9771185	16	2.2	16	89	0	52	40	11	17	31	1.85
9778827--9778863	19	1.9	19	94	0	65	62	8	5	24	1.44
9779085--9779769	231	2.9	232	85	5	856	43	4	10	40	1.60
9779996--9780038	2	21.5	2	86	9	61	53	0	2	44	1.13
9782069--9782137	24	2.9	25	78	18	67	75	4	4	15	1.12
9783466--9783587	33	3.7	33	78	5	111	40	15	13	29	1.86
9783477--9783587	34	3.3	33	77	8	91	41	17	12	28	1.86
9784273--9784382	33	3.3	34	74	13	86	40	19	10	30	1.85
9784431--9784856	33	13.0	33	73	9	282	36	12	20	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9784411--9784852	66	6.7	65	77	7	326	36	13	19	30	1.90
9793203--9793238	19	1.9	19	88	5	56	33	2	2	61	1.25
9804320--9804393	6	12.2	6	71	2	58	24	2	9	63	1.37
9804333--9804379	12	3.9	12	85	0	67	23	2	8	65	1.31
9804320--9804385	24	2.8	24	78	0	78	22	3	10	63	1.40
9807688--9807717	15	2.1	14	93	6	51	33	0	0	66	0.92
9807935--9807965	15	2.0	16	93	6	55	29	6	12	51	1.65
9814026--9814155	22	5.8	22	70	8	91	32	8	14	44	1.75
9814026--9814169	44	3.2	45	80	4	177	31	9	15	43	1.79
9814026--9814154	23	5.7	22	66	11	73	32	8	14	44	1.76
9813931--9814155	44	5.1	45	74	11	171	35	8	14	41	1.77
9814282--9814314	17	1.9	17	93	0	57	42	18	6	33	1.75
9814311--9814371	18	3.3	18	88	11	88	34	11	9	44	1.74
9814299--9814380	37	2.2	37	76	8	87	37	12	8	41	1.73
9814319--9814378	18	3.3	18	85	2	75	40	10	8	41	1.69
9814384--9814424	16	2.5	17	80	8	57	36	14	17	31	1.90
9814908--9815017	42	2.6	43	86	2	159	26	10	20	42	1.84
9815255--9815326	6	12.0	6	75	4	65	23	1	8	66	1.27
9815255--9815321	18	3.7	18	85	2	80	23	1	8	65	1.29
9816298--9816329	13	2.4	13	94	5	55	6	3	12	78	1.06
9816311--9816403	13	6.8	13	73	16	57	19	1	4	75	1.03
9816326--9816388	14	4.8	12	75	16	54	17	1	3	77	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9816311--9816374	32	2.0	32	84	6	85	14	1	6	78	1.02
9816286--9816377	46	2.0	45	83	10	116	10	3	6	79	1.03
9816357--9816403	14	3.3	15	85	8	62	27	0	0	72	0.85
9816293--9816389	46	2.1	46	81	11	110	14	2	6	77	1.05
9820328--9820373	8	5.8	8	76	19	51	0	21	2	76	0.90
9820320--9820374	9	6.6	9	77	12	55	0	20	1	78	0.85
9820326--9820378	23	2.4	21	76	14	61	0	18	1	79	0.83
9825774--9825820	24	1.9	25	83	12	62	68	6	8	17	1.37
9827749--9827793	21	2.1	21	83	4	54	66	2	15	15	1.35
9835738--9835784	13	3.9	12	77	8	51	76	0	21	2	0.89
9840123--9840280	5	31.8	5	78	18	106	1	0	16	81	0.78
9840153--9840283	1	131.0	1	72	0	73	1	0	14	83	0.71
9840153--9840282	7	18.6	7	75	19	112	1	0	14	83	0.71
9840624--9840695	35	2.1	35	86	5	101	54	12	13	19	1.71
9841143--9841198	23	2.4	23	90	0	85	35	21	16	26	1.94
9841718--9841779	32	1.9	32	90	0	97	30	12	19	37	1.89
9847268--9847305	16	2.3	17	86	4	51	2	13	2	81	0.90
9847267--9847305	17	2.3	17	86	8	53	2	12	2	82	0.89
9847762--9847810	22	2.3	20	80	10	53	4	4	14	77	1.06
9847893--9847931	13	3.0	13	84	0	51	0	12	2	84	0.72
9850044--9850097	21	2.7	20	80	8	56	27	9	1	61	1.37
9850059--9850101	14	3.1	14	76	10	52	27	6	2	62	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9857696--9857824	64	2.0	64	95	0	231	23	27	12	37	1.90
9859787--9859841	3	18.7	3	88	3	85	32	3	0	63	1.12
9862605--9862665	27	2.3	27	82	5	70	3	4	11	80	0.99
9862615--9862673	14	3.8	16	75	11	52	1	0	13	84	0.69
9862616--9862673	26	2.2	26	84	15	82	1	0	13	84	0.70
9862624--9862674	25	2.1	24	88	3	75	1	0	13	84	0.71
9862615--9862673	19	3.2	20	86	9	72	1	0	13	84	0.69
9862711--9862797	35	2.4	37	83	7	108	57	10	14	17	1.64
9862711--9862832	36	3.4	36	81	1	120	56	9	15	18	1.66
9862742--9862949	36	5.9	36	67	15	94	53	15	15	15	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130