genome.fa.s556.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  100  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19522917--19522983	22	3.2	20	70	17	55	35	2	5	55	1.40
19523053--19523095	20	2.2	20	82	0	50	32	4	9	53	1.53
19522941--19523158	55	4.0	53	79	8	195	29	5	12	52	1.61
19523153--19523214	32	1.9	32	86	0	88	30	1	11	56	1.44
19523222--19523277	24	2.3	25	87	6	80	33	3	10	51	1.54
19523391--19523439	20	2.5	20	90	3	73	26	6	18	48	1.71
19523427--19523469	13	3.1	13	78	18	50	27	9	16	46	1.77
19523421--19523471	16	3.4	15	76	17	52	29	9	13	47	1.75
19524838--19524912	37	2.0	37	84	0	96	29	20	9	41	1.83
19530753--19530979	2	113.5	2	77	1	132	40	4	9	45	1.57
19536656--19536727	21	3.5	20	82	15	78	31	5	0	62	1.18
19538944--19539070	64	2.0	64	85	0	173	28	15	22	33	1.95
19540977--19541023	16	2.9	16	78	18	53	53	10	6	29	1.60
19544278--19544322	23	2.0	23	86	8	65	71	11	4	13	1.29
19546475--19546533	23	2.5	23	83	10	66	61	11	6	20	1.53
19547259--19547303	21	2.2	21	84	4	56	24	22	15	37	1.93
19548670--19548717	22	2.2	22	88	3	71	35	12	12	39	1.81
19548864--19548984	22	5.5	22	80	2	91	42	19	6	31	1.77
19550503--19550544	22	1.9	22	90	0	66	2	54	2	40	1.26
19550516--19550555	14	2.9	14	88	0	62	0	55	2	42	1.13
19550735--19550789	27	2.0	27	82	6	67	20	3	14	61	1.47
19550980--19551650	335	2.0	335	92	2	1118	34	3	12	49	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19552079--19552117	16	2.4	16	86	4	51	51	10	7	30	1.64
19555694--19555729	17	2.1	17	94	0	63	27	19	13	38	1.90
19555787--19555878	3	30.7	3	83	0	112	35	1	33	29	1.65
19559573--19559614	21	2.0	21	100	0	84	38	0	4	57	1.20
19576368--19576392	11	2.3	11	100	0	50	56	8	0	36	1.29
19579665--19579706	2	21.0	2	100	0	84	50	0	0	50	1.00
19579818--19579860	3	14.3	3	100	0	86	32	0	0	67	0.91
19581185--19581242	22	2.6	22	78	7	64	62	6	22	8	1.48
19581186--19581242	23	2.6	21	78	13	60	63	7	21	8	1.47
19581374--19581454	40	2.0	40	88	4	119	40	24	2	32	1.68
19584990--19585039	2	26.0	2	92	8	86	0	52	0	48	1.00
19587418--19587575	85	1.9	83	93	2	271	55	8	7	28	1.58
19597096--19597141	17	2.6	17	86	10	58	69	2	13	15	1.28
19600986--19601045	10	6.1	9	77	12	57	26	13	11	48	1.76
19600984--19601049	29	2.2	30	86	5	89	25	13	10	50	1.74
19601930--19601980	22	2.4	22	83	3	68	29	3	0	66	1.09
19602260--19602304	21	2.0	21	83	8	54	57	0	2	40	1.11
19603914--19603969	24	2.3	26	84	12	82	28	19	17	33	1.95
19604118--19604153	18	2.1	17	90	10	56	16	0	5	77	0.94
19604209--19604238	14	2.1	15	93	6	53	63	0	6	30	1.20
19607350--19607388	21	1.9	20	89	5	60	76	7	2	12	1.09
19609612--19609714	33	3.0	35	74	16	99	16	12	17	53	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19609680--19609865	100	1.9	100	80	8	218	22	14	13	50	1.77
19609781--19609865	33	2.5	33	84	5	100	21	15	10	52	1.72
19623248--19623350	51	2.0	53	81	7	122	37	17	8	35	1.81
19627894--19627943	21	2.4	21	96	0	91	32	20	20	28	1.97
19634708--19634737	9	3.2	9	95	4	51	63	0	0	36	0.95
19634710--19634739	10	3.1	10	95	4	53	63	0	0	36	0.95
19640246--19640307	15	3.9	15	78	14	61	4	14	0	80	0.87
19640244--19640290	19	2.5	18	80	10	58	4	12	0	82	0.80
19640247--19640308	24	2.6	22	83	16	79	4	14	0	80	0.87
19640244--19640308	20	3.5	19	78	12	55	4	13	0	81	0.84
19642781--19642861	40	2.1	39	86	4	110	50	9	17	22	1.75
19643959--19643992	14	2.5	13	86	9	50	52	14	5	26	1.64
19643949--19644174	18	12.2	19	68	26	91	50	12	6	30	1.66
19644057--19644112	21	2.6	22	80	8	71	46	12	7	33	1.69
19644096--19644178	16	5.0	16	72	16	71	49	10	7	32	1.65
19644068--19644178	36	3.1	35	75	17	106	50	9	7	32	1.63
19644424--19644467	13	3.5	13	87	6	54	79	4	2	13	0.98
19644942--19644979	19	2.0	19	89	0	58	68	21	0	10	1.19
19645391--19645438	6	8.0	6	85	0	51	68	8	0	22	1.16
19645390--19645436	18	2.6	18	89	0	67	70	10	0	19	1.16
19646343--19646378	10	3.6	10	88	0	54	77	0	13	8	0.98
19646341--19646378	20	1.9	20	94	0	67	76	0	15	7	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19647801--19647913	4	28.2	4	70	15	65	72	7	3	16	1.21
19647801--19647835	17	2.1	16	89	5	52	77	2	0	20	0.90
19647801--19647865	28	2.4	27	82	10	78	76	7	0	15	0.99
19647827--19647881	22	2.4	23	80	14	69	72	10	1	14	1.19
19649114--19649379	52	5.0	51	75	8	217	40	16	13	28	1.87
19655596--19655645	23	2.2	23	88	0	73	14	30	8	48	1.72
19660999--19661151	73	2.1	73	90	0	234	35	10	9	44	1.72
19661256--19661336	4	20.0	4	69	20	53	70	6	3	19	1.24
19661261--19661339	28	2.9	27	76	23	76	72	6	3	17	1.21
19664076--19664130	28	2.0	28	89	7	85	21	5	5	67	1.32
19664198--19664257	20	3.0	20	82	4	77	33	6	10	50	1.62
19668306--19668368	24	2.7	23	82	7	72	85	4	7	1	0.78
19668313--19668374	17	3.8	16	79	12	63	85	4	9	0	0.73
19668313--19668368	10	5.4	10	80	14	51	87	5	7	0	0.67
19668313--19668375	16	4.0	16	76	13	51	84	6	9	0	0.79
19669649--19669812	86	1.9	86	88	0	247	34	18	12	33	1.89
19669731--19669767	17	2.2	17	90	0	56	29	24	16	29	1.96
19671723--19671749	5	5.4	5	100	0	54	0	18	0	81	0.69
19673153--19673185	17	1.9	17	93	0	57	24	0	30	45	1.53
19673210--19673382	20	8.8	19	76	7	125	16	4	31	47	1.66
19673210--19673375	40	4.2	40	74	9	142	16	4	30	48	1.67
19678958--19679164	102	2.0	102	98	0	396	33	12	20	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19681142--19681169	9	3.1	9	100	0	56	67	10	10	10	1.42
19682044--19682145	7	14.0	7	70	15	55	45	29	2	22	1.67
19682044--19682145	14	7.0	14	72	10	71	45	29	2	22	1.67
19682337--19682370	17	1.9	18	88	5	52	52	8	0	38	1.33
19682791--19682819	14	2.1	14	100	0	58	20	13	0	65	1.26
19690660--19690730	34	2.1	34	86	5	99	43	11	15	29	1.81
19691529--19691594	34	1.9	34	84	6	89	43	13	18	24	1.86
19691803--19691917	60	1.9	60	83	0	149	36	11	7	44	1.69
19696606--19697155	234	2.4	233	80	8	579	52	5	9	32	1.56
19698144--19698184	21	2.0	21	85	4	57	51	31	2	14	1.56
19699058--19699089	2	16.0	2	100	0	64	50	0	0	50	1.00
19700148--19700207	18	3.5	17	75	11	68	51	1	3	43	1.28
19700150--19700221	34	2.1	35	97	2	137	52	2	2	41	1.30
19708479--19708556	39	2.0	39	92	0	129	17	19	21	41	1.91
19718380--19718423	22	2.0	22	90	0	70	31	13	13	40	1.84
19722277--19722320	22	2.0	22	95	0	79	31	11	13	43	1.80
19727349--19727428	39	2.1	39	97	0	151	36	40	3	20	1.70
19728668--19728722	27	2.0	27	100	0	110	32	10	21	34	1.89
19734978--19735013	18	2.0	18	89	10	56	72	0	0	27	0.85
19735296--19735351	20	2.8	20	76	15	62	46	8	7	37	1.63
19735471--19735516	23	2.0	24	86	4	67	65	8	2	23	1.32
19735484--19735518	18	1.9	18	88	0	52	65	8	0	25	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19735461--19735516	28	2.0	29	82	10	71	64	10	1	23	1.35
19758001--19758141	69	2.0	69	93	0	237	21	12	12	53	1.71
19760933--19760969	15	2.5	15	90	0	56	8	21	2	67	1.29
19760933--19760993	24	2.5	24	76	10	70	8	18	1	72	1.18
19760947--19761011	33	2.0	33	81	6	78	7	16	1	73	1.13
19764235--19764798	143	4.0	142	75	5	460	32	11	12	42	1.79
19772705--19772743	19	2.1	19	90	0	60	28	5	12	53	1.60
19772901--19772985	17	4.7	19	72	21	67	36	5	10	47	1.63
19777180--19777338	81	2.0	82	88	1	239	37	13	12	36	1.82
19780422--19780709	43	6.8	43	82	3	293	28	15	18	38	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130