genome.fa.s556.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  51  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11323367--11323415	13	3.6	14	77	17	50	48	2	0	48	1.12
11323441--11323477	16	2.2	18	90	9	60	45	0	0	54	1.00
11323517--11323557	16	2.6	15	88	7	55	53	0	0	46	1.00
11323731--11323761	15	2.0	16	93	6	55	38	0	0	61	0.96
11323726--11323778	8	6.4	8	80	10	54	41	0	0	58	0.98
11323816--11323866	25	2.0	25	88	7	77	50	0	0	49	1.00
11324304--11324404	40	2.5	40	83	1	130	44	19	13	21	1.86
11324900--11324940	18	2.3	18	87	4	57	51	4	0	43	1.23
11325392--11325439	24	2.0	23	84	11	62	37	2	6	54	1.38
11325441--11325477	14	2.9	14	88	11	53	56	0	0	43	0.99
11326122--11326171	22	2.3	22	86	6	66	40	2	0	58	1.10
11326140--11326174	17	2.0	18	88	5	54	40	0	0	60	0.97
11326148--11326210	29	2.2	27	81	10	72	47	0	1	50	1.10
11327241--11327324	42	1.9	45	83	11	113	47	0	2	50	1.14
11327335--11327375	16	2.6	15	85	11	55	53	0	0	46	1.00
11327469--11327507	20	2.0	20	89	0	60	48	2	7	41	1.45
11327627--11327659	18	1.9	17	88	11	50	48	12	6	33	1.65
11327577--11328316	182	4.1	181	79	6	713	41	7	9	41	1.67
11329280--11329312	12	2.6	13	85	9	50	51	0	0	48	1.00
11329301--11329349	20	2.5	20	100	0	98	44	4	0	51	1.20
11329273--11329377	20	4.7	22	76	14	90	46	2	1	48	1.27
11329469--11329908	180	2.5	178	78	3	452	39	7	10	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11330019--11330054	19	1.9	18	94	5	63	58	2	0	38	1.13
11330069--11330109	19	2.2	19	91	4	66	43	0	2	53	1.13
11332009--11332981	181	5.4	177	77	9	818	41	8	8	41	1.65
11332070--11339254	362	20.1	356	71	12	1485	40	8	9	41	1.68
11332121--11334759	181	14.6	180	72	11	933	41	8	9	40	1.68
11334061--11334535	169	2.7	169	80	8	519	40	8	10	41	1.69
11334061--11334715	350	1.9	348	81	5	802	40	8	9	41	1.69
11334902--11335920	181	5.7	177	76	6	641	40	8	8	41	1.67
11335946--11339327	181	18.7	178	73	9	1774	39	8	10	41	1.69
11335946--11339327	542	6.2	540	76	7	2384	39	8	10	41	1.69
11339439--11339483	17	2.6	18	79	13	58	42	2	6	48	1.41
11339448--11339486	17	2.4	17	91	4	62	46	2	5	46	1.38
11339381--11340533	180	6.4	181	79	7	1053	40	6	9	43	1.65
11339391--11340542	361	3.2	356	76	7	1071	40	6	9	42	1.65
11341304--11341355	25	2.1	25	88	0	77	51	11	5	30	1.61
11341909--11341948	16	2.3	17	87	12	55	45	2	15	37	1.59
11341349--11342012	361	1.8	360	79	5	766	39	7	11	41	1.70
11341348--11342928	181	8.8	178	73	10	678	39	7	10	42	1.67
11342834--11343025	97	2.0	95	91	4	314	38	5	5	50	1.50
11342983--11343646	177	3.7	175	77	8	493	40	8	9	41	1.68
11343668--11351152	539	14.0	536	75	9	4665	40	8	9	41	1.68
11343668--11351134	181	41.9	180	74	9	4223	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11345941--11345973	18	1.9	17	88	11	50	48	3	9	39	1.50
11343668--11351145	358	21.0	360	74	8	4471	40	8	9	41	1.68
11346477--11346509	18	1.9	17	88	11	50	48	6	6	39	1.53
11346315--11346806	174	2.8	174	76	9	384	40	8	8	42	1.66
11347234--11347554	163	1.9	166	84	6	427	41	7	10	41	1.67
11348268--11348292	13	1.9	13	100	0	50	40	8	12	40	1.72
11349645--11349688	17	2.5	17	82	10	54	47	9	4	38	1.56
11349826--11349858	17	2.0	17	88	5	50	42	3	15	39	1.62
11342960--11351116	719	11.5	722	74	9	4370	40	8	9	41	1.68
11351271--11351699	180	2.4	180	93	1	729	38	10	12	37	1.79
11351178--11352742	181	8.6	181	76	7	836	40	8	10	40	1.70
11352310--11352347	18	2.1	19	90	5	60	39	2	7	50	1.46
11351631--11352768	362	3.1	356	79	6	1159	41	6	10	41	1.65
11352772--11352911	67	2.1	67	84	0	190	41	9	13	35	1.77
11354580--11354611	15	2.1	15	94	0	55	28	0	0	71	0.86
11352956--11355375	363	6.7	360	73	9	882	40	8	9	41	1.68
11352839--11355660	181	15.6	182	75	6	1891	40	8	10	41	1.69
11355514--11355813	157	1.9	157	80	4	354	39	6	13	40	1.71
11355671--11357029	181	7.5	179	73	7	1018	38	7	11	42	1.69
11355671--11357029	362	3.8	357	75	8	1178	38	7	11	42	1.69
11357506--11357540	16	2.2	16	100	0	70	54	5	5	34	1.48
11357735--11358460	181	4.1	177	79	8	581	42	8	7	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11358021--11358772	181	4.2	176	77	6	603	43	8	7	40	1.63
11358889--11361757	180	16.0	182	76	7	2173	40	10	8	40	1.70
11358820--11361752	357	8.2	359	76	6	1898	40	10	8	40	1.70
11361627--11361916	158	1.8	158	82	4	370	34	10	9	45	1.70
11361785--11366916	181	28.7	180	74	9	3403	42	9	8	40	1.67
11363823--11363873	18	2.8	18	74	14	50	35	1	13	49	1.54
11364660--11364689	12	2.5	12	94	0	51	43	3	10	43	1.54
11364709--11364750	20	2.1	20	86	0	57	57	2	2	38	1.25
11364829--11364861	16	2.1	16	88	5	50	36	6	9	48	1.60
11364740--11366395	902	1.8	892	80	7	1972	42	8	7	40	1.64
11366910--11366955	24	2.0	22	84	16	58	36	10	0	52	1.37
11366918--11366961	22	1.9	24	81	9	56	38	11	0	50	1.39
11367046--11371242	181	23.5	180	76	6	2877	41	9	7	40	1.66
11367073--11386107	900	21.4	894	71	12	3116	41	9	8	40	1.68
11371307--11371346	18	2.2	19	86	4	55	60	2	2	35	1.24
11371472--11374041	181	14.4	180	72	11	507	42	9	7	40	1.66
11371915--11374041	181	11.9	181	77	6	1662	42	9	7	40	1.66
11371338--11374011	362	7.5	358	74	8	1857	42	9	7	40	1.66
11375317--11377302	181	11.0	180	75	9	1433	42	9	7	40	1.66
11376166--11376210	18	2.6	16	82	10	54	44	6	4	44	1.50
11375317--11379772	363	12.5	357	72	11	2116	41	9	8	40	1.68
11375317--11377244	544	3.6	541	86	4	2276	42	9	7	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11377316--11379780	181	13.8	180	73	9	1530	41	10	8	39	1.69
11378321--11378353	16	2.0	17	94	5	59	36	12	3	48	1.56
11377406--11379527	539	4.0	523	78	7	1635	41	10	8	39	1.70
11379237--11379275	19	2.0	21	85	10	55	35	15	5	43	1.69
11379787--11386530	180	37.5	180	73	9	3794	41	9	8	40	1.68
11380505--11381270	181	4.2	180	75	7	487	42	9	9	38	1.70
11379779--11386530	360	18.8	357	75	8	4639	41	9	8	40	1.68
11386536--11389866	180	18.5	179	73	10	1898	40	8	9	41	1.67
11387717--11387751	18	1.9	18	94	0	61	45	11	8	34	1.71
11388845--11389440	171	3.4	172	78	10	551	38	8	9	44	1.67
11387730--11389840	182	11.8	178	72	11	965	39	8	9	42	1.68
11389122--11390662	848	1.8	852	80	6	1848	39	8	9	41	1.68
11389977--11395817	181	32.5	180	75	9	3648	40	8	9	41	1.68
11389977--11395817	361	16.3	361	75	7	4214	40	8	9	41	1.68
11390068--11392456	180	13.3	180	74	9	555	40	8	9	41	1.67
11389977--11395689	896	6.4	886	74	10	3157	40	8	9	41	1.68
11395872--11397234	180	7.6	180	76	6	1132	42	10	7	39	1.68
11395878--11397236	181	7.6	180	77	6	1115	42	10	7	39	1.68
11397389--11400415	180	16.8	180	69	13	549	41	9	8	39	1.69
11397768--11397947	99	1.8	99	80	4	220	32	13	7	46	1.70
11397952--11398165	106	2.0	106	85	3	288	50	7	7	34	1.59
11398058--11400615	180	14.3	178	74	8	1737	42	9	8	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11399054--11400615	357	4.3	356	76	6	1217	42	10	8	38	1.69
11399068--11400614	539	2.9	532	82	4	1664	42	10	8	38	1.69
11400756--11400790	16	2.2	16	89	0	52	40	11	14	34	1.82
11407628--11407698	3	23.7	3	82	16	85	67	1	2	28	1.13
11407709--11407770	23	2.7	23	83	14	74	74	3	3	19	1.10
11407710--11407782	23	3.2	23	72	18	62	78	2	4	15	1.02
11408694--11408724	9	3.4	9	95	0	53	22	0	3	74	0.96
11409138--11409332	104	1.9	103	82	5	250	38	14	24	22	1.91
11417532--11417589	30	1.9	30	85	0	80	50	1	0	48	1.11
11418867--11419009	72	2.0	72	94	0	250	35	24	7	32	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130