genome.fa.s556.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  56  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12102081--12102531	142	3.2	142	77	6	394	41	13	12	32	1.83
12104350--12104438	42	2.1	43	91	4	146	46	11	1	41	1.47
12104860--12104931	13	5.4	13	76	11	65	20	2	37	38	1.68
12104917--12104946	14	2.1	15	93	6	53	16	0	33	50	1.46
12104863--12104946	6	12.3	7	71	15	52	19	2	35	42	1.64
12109620--12109681	15	4.1	15	74	14	56	4	16	1	77	1.02
12110565--12110602	10	3.8	10	89	0	58	5	2	2	89	0.64
12110553--12110602	18	2.8	18	84	9	66	6	6	2	86	0.79
12110557--12110606	9	5.6	9	81	11	50	4	8	2	86	0.78
12113340--12113364	13	1.9	13	100	0	50	0	0	20	80	0.72
12114648--12114691	16	2.7	16	96	3	79	47	0	0	52	1.00
12114640--12114734	41	2.3	41	82	12	113	52	0	0	47	1.00
12114789--12114949	64	2.5	65	81	7	188	42	1	1	55	1.16
12114781--12114960	18	10.7	17	72	20	130	41	1	1	56	1.14
12114781--12114960	49	3.6	48	81	12	202	41	1	1	56	1.14
12114798--12114947	82	1.9	78	82	8	185	42	1	1	55	1.16
12131504--12131545	19	2.3	18	80	15	50	73	0	7	19	1.05
12133728--12133808	17	5.3	16	70	22	59	70	1	2	25	1.07
12133786--12133842	21	2.6	22	78	10	64	70	0	3	26	1.03
12133811--12133859	20	2.4	20	86	3	62	75	0	6	18	1.00
12149514--12150192	203	3.4	204	80	1	715	41	10	12	35	1.76
12156936--12156969	12	2.8	12	100	0	68	17	47	0	35	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12157485--12157620	68	2.0	68	86	0	191	30	16	17	35	1.93
12158649--12158705	23	2.4	23	91	2	87	47	3	19	29	1.66
12158661--12158706	23	2.0	23	100	0	92	47	4	17	30	1.67
12159003--12159041	21	1.9	20	85	15	53	30	25	7	35	1.84
12159786--12161087	236	5.5	236	84	3	1505	45	11	9	33	1.72
12159786--12161083	471	2.8	469	83	3	1597	45	11	9	33	1.72
12159786--12161083	707	1.8	705	83	3	1725	45	11	9	33	1.72
12162530--12162587	31	1.9	31	85	3	82	27	5	22	44	1.74
12162640--12162968	154	2.1	154	84	2	435	28	9	17	43	1.81
12164559--12164623	30	2.1	31	85	2	87	38	3	26	32	1.72
12164577--12164639	30	2.0	30	84	6	81	41	3	22	33	1.70
12165589--12165671	42	2.0	42	88	4	123	24	8	22	44	1.80
12167927--12167968	21	2.0	22	85	4	59	23	4	7	64	1.38
12173441--12173490	24	2.0	24	81	14	57	42	0	4	54	1.19
12174060--12174099	9	4.6	9	85	14	57	20	0	0	80	0.72
12174069--12174098	15	1.9	16	93	6	53	20	0	0	80	0.72
12175337--12175431	3	31.7	3	95	0	172	67	0	1	31	0.98
12175917--12176007	32	2.8	33	83	12	125	42	18	8	29	1.80
12176189--12176280	34	2.7	34	79	3	96	36	21	11	29	1.89
12176482--12176553	33	2.2	34	85	7	103	31	11	19	37	1.87
12177291--12177390	44	2.3	44	82	3	130	34	12	17	37	1.86
12177312--12177390	22	3.6	22	66	0	59	31	11	18	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12177890--12178235	40	8.8	40	75	5	256	35	11	19	33	1.88
12177983--12178045	33	1.9	33	90	0	99	33	15	15	34	1.90
12177902--12178109	114	1.8	114	80	0	254	35	13	18	33	1.90
12180468--12180492	13	1.9	13	100	0	50	48	8	12	32	1.69
12182552--12182601	27	1.9	26	88	8	75	22	2	20	56	1.53
12183168--12183224	11	5.5	10	83	8	53	12	5	1	80	0.95
12183149--12183261	5	22.4	5	70	19	67	15	5	2	76	1.09
12183168--12183251	17	5.1	17	69	15	59	13	5	2	78	1.03
12183163--12183262	30	3.5	29	79	16	95	14	7	2	77	1.07
12183167--12183256	33	2.7	31	78	11	90	13	6	2	77	1.05
12183175--12183266	18	5.0	17	75	19	71	14	5	2	78	1.02
12183276--12183789	58	8.7	57	78	9	498	44	6	13	35	1.70
12183275--12183789	116	4.4	116	82	9	576	44	6	13	35	1.70
12183465--12183792	120	2.8	116	82	6	317	42	8	13	35	1.74
12194194--12194248	9	6.4	9	87	8	80	80	0	9	10	0.92
12194196--12194245	8	6.0	8	80	15	57	84	0	6	10	0.79
12194197--12194245	25	2.0	25	92	4	82	83	0	6	10	0.80
12195252--12195360	41	2.7	41	91	2	184	24	16	22	35	1.95
12195338--12195383	23	2.0	23	88	12	69	26	15	15	43	1.85
12195256--12195466	105	2.0	106	87	2	309	24	17	20	37	1.94
12195360--12195487	41	3.0	41	85	3	157	23	18	22	35	1.96
12195682--12195741	6	10.2	6	72	16	54	18	3	1	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12195707--12195752	24	2.0	23	82	4	56	26	2	0	71	0.97
12195710--12195827	21	5.7	21	69	20	70	27	4	1	66	1.20
12195772--12195825	21	2.3	25	84	12	71	31	3	0	64	1.11
12195884--12195951	22	3.3	20	79	20	70	25	5	5	63	1.40
12196223--12196281	26	2.4	24	80	11	66	28	3	16	50	1.61
12196228--12196281	25	2.2	24	83	12	65	24	3	16	55	1.57
12196786--12196923	5	26.6	5	70	17	61	18	4	2	73	1.12
12196836--12196923	32	2.6	33	77	16	92	13	5	2	78	1.03
12196937--12197336	58	6.7	58	80	9	385	45	6	12	35	1.68
12196946--12197282	122	2.8	120	87	5	462	44	7	11	36	1.68
12196946--12197336	122	3.3	121	81	9	451	44	6	12	36	1.68
12196938--12197336	63	6.7	57	77	12	336	45	6	12	35	1.68
12198327--12198364	15	2.6	14	84	15	51	42	0	2	55	1.14
12199612--12199656	23	2.0	23	91	4	74	40	17	15	26	1.90
12207384--12207429	16	2.7	18	80	10	51	21	4	2	71	1.14
12207533--12207643	3	37.3	3	73	15	81	30	5	0	63	1.23
12207733--12207844	52	2.2	52	90	0	170	37	24	10	27	1.88
12209272--12209313	17	2.5	17	88	0	57	23	7	9	59	1.53
12212974--12213250	144	1.9	143	82	7	348	32	10	15	41	1.81
12213840--12213987	29	4.9	29	73	11	111	31	16	19	32	1.94
12213862--12213974	29	3.8	29	76	9	120	29	18	17	34	1.94
12213842--12213987	60	2.4	60	90	0	220	30	17	19	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12213842--12213995	31	5.1	30	76	12	145	30	16	18	34	1.93
12213858--12214051	60	3.2	62	85	2	200	34	15	15	34	1.90
12214443--12214644	50	4.1	49	75	9	178	27	7	16	49	1.72
12218227--12218270	14	3.3	13	78	15	54	81	0	9	9	0.87
12224984--12225159	71	2.5	70	80	8	194	24	9	19	46	1.80
12228205--12228300	40	2.4	40	84	3	113	16	2	53	28	1.55
12232206--12232278	6	12.2	6	89	0	101	23	0	46	30	1.52
12233946--12233997	24	2.1	25	82	10	63	53	1	0	44	1.11
12234667--12234733	31	2.1	31	83	2	80	55	2	7	34	1.43
12235135--12235165	3	10.3	3	100	0	62	35	0	0	64	0.94
12239596--12239799	60	3.3	60	73	11	171	33	11	11	42	1.78
12239544--12240028	125	3.9	124	79	6	467	37	11	12	37	1.80
12239706--12240021	64	5.0	64	68	12	179	38	11	14	35	1.82
12239546--12240028	127	3.9	125	80	4	472	37	11	12	37	1.80
12240435--12240569	42	3.2	41	79	6	146	25	8	14	51	1.70
12240453--12240651	42	5.0	37	76	14	123	25	10	16	48	1.76
12241337--12241415	32	2.5	32	91	0	122	55	5	10	29	1.54
12244625--12244667	6	7.2	6	81	0	50	37	30	11	20	1.89
12244625--12244661	12	3.1	12	88	0	56	40	29	10	18	1.85
12244625--12244685	18	3.4	18	83	0	59	34	29	11	24	1.91
12245509--12245541	17	1.9	17	93	0	57	27	18	12	42	1.85
12245822--12246063	64	3.8	64	73	8	201	37	18	10	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12245950--12246437	131	4.0	115	72	16	311	36	15	12	35	1.85
12246063--12246516	127	3.6	126	78	8	452	37	14	12	35	1.84
12247123--12247174	23	2.3	23	89	0	86	65	21	3	9	1.38
12247123--12247166	12	3.8	12	75	6	54	65	22	2	9	1.32
12254055--12254104	17	3.1	16	78	13	57	22	6	0	72	1.07
12254783--12254829	2	23.5	2	100	0	94	51	0	0	48	1.00
12257280--12257327	11	4.3	11	75	15	53	54	0	0	45	0.99
12258128--12258158	14	2.1	15	94	5	55	58	3	0	38	1.15
12259210--12259245	18	2.1	18	89	5	56	5	41	2	50	1.40
12263122--12263174	22	2.4	22	100	0	106	45	7	5	41	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130