genome.fa.s556.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  72  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14866082--14866173	42	2.2	42	84	1	114	35	8	6	48	1.60
14867120--14867158	16	2.4	16	82	0	51	66	2	10	20	1.33
14867136--14867174	17	2.4	17	86	4	53	66	7	5	20	1.36
14867194--14867229	16	2.2	16	90	0	54	38	16	8	36	1.79
14868064--14868096	14	2.2	16	89	10	52	48	0	0	51	1.00
14868270--14868312	16	2.7	16	79	10	52	46	20	4	27	1.71
14876725--14876769	20	2.3	19	77	11	54	53	0	0	46	1.00
14876692--14876755	24	2.5	24	73	14	58	53	1	0	45	1.10
14878014--14878072	15	3.9	15	82	4	55	6	15	0	77	0.96
14878023--14878074	14	3.5	14	78	14	50	7	17	0	75	1.03
14878250--14878361	30	3.8	29	82	5	127	44	6	0	49	1.27
14878236--14878360	60	2.1	58	81	8	137	43	6	0	50	1.28
14878614--14878698	29	2.9	30	83	1	100	58	2	2	36	1.24
14883687--14883733	15	3.1	15	79	8	51	51	0	6	42	1.27
14884412--14884445	3	11.0	3	87	6	50	0	32	2	64	1.08
14892771--14892810	15	2.7	15	84	0	53	37	0	5	57	1.21
14895630--14895677	15	3.3	15	80	11	55	66	0	2	31	1.03
14903219--14903245	2	13.5	2	100	0	54	0	48	0	51	1.00
14904447--14904506	27	2.2	27	96	0	111	35	26	5	33	1.78
14916499--14916624	63	2.0	63	93	0	216	38	17	19	24	1.92
14939352--14939388	18	2.1	18	94	0	65	29	8	10	51	1.65
14947205--14947272	12	5.7	12	75	13	52	38	2	2	55	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14950673--14950712	21	1.9	21	89	0	62	55	0	0	45	0.99
14953246--14953274	11	2.5	12	94	5	51	10	10	0	79	0.94
14961733--14961784	27	1.9	27	92	0	86	36	11	9	42	1.74
14967748--14967786	20	2.0	20	90	5	62	51	0	0	48	1.00
14968200--14968254	20	2.9	19	80	15	60	41	0	0	58	0.98
14976653--14976706	26	2.1	26	92	0	90	33	9	14	42	1.78
14976656--14976713	26	2.2	26	87	0	80	34	8	17	39	1.80
14977324--14977361	20	1.9	20	88	0	58	65	2	0	31	1.06
14980933--14981016	43	2.0	43	92	0	141	36	1	7	54	1.35
14987147--14987232	31	2.8	31	91	3	138	44	34	1	19	1.59
14987145--14987344	47	4.3	44	79	11	188	45	32	2	21	1.63
14987217--14987371	31	5.1	30	74	10	93	45	28	2	23	1.66
14987151--14987344	16	12.7	14	75	14	138	44	31	1	21	1.62
14993878--14993921	9	4.8	9	88	5	70	86	0	4	9	0.70
14993878--14993920	10	4.4	10	85	8	54	88	0	4	6	0.63
14993878--14993920	19	2.3	19	91	0	68	88	0	4	6	0.63
14995552--14995603	27	2.0	27	84	3	70	25	23	9	42	1.84
14995586--14995626	18	2.3	18	82	0	55	26	26	12	34	1.92
14995723--14995822	41	2.4	41	88	6	141	34	18	16	32	1.92
14996081--14996270	88	2.2	88	84	0	236	22	20	17	40	1.92
14996077--14996682	198	3.1	194	82	4	714	22	18	17	41	1.90
14996475--14996660	87	2.1	88	85	3	243	22	18	16	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14996646--14996695	22	2.2	23	89	3	75	22	24	22	32	1.98
14996653--14996712	22	2.7	22	79	5	59	25	25	20	30	1.99
14996785--14996850	22	3.0	22	90	0	96	25	18	19	36	1.94
14996562--14996932	132	2.8	131	77	6	408	21	19	19	39	1.92
14997480--14997511	14	2.4	14	94	5	57	75	9	6	9	1.20
14998568--14998764	16	12.8	15	72	13	134	43	33	4	18	1.69
14998568--14998764	31	6.4	31	71	13	149	43	33	4	18	1.69
15002604--15002663	31	2.0	29	81	15	68	41	18	10	30	1.83
15003274--15003351	28	2.7	28	81	11	95	56	3	1	38	1.26
15003267--15003354	28	3.1	29	79	12	94	57	3	1	37	1.23
15003335--15003390	26	2.2	26	87	6	78	67	3	1	26	1.16
15003333--15003400	17	4.0	16	75	11	55	64	5	1	27	1.25
15003560--15003598	12	3.3	12	82	7	53	56	2	5	35	1.35
15003721--15003802	40	2.0	40	88	4	121	40	0	2	57	1.12
15003744--15003805	20	3.2	20	68	9	56	38	0	1	59	1.07
15003873--15003925	8	6.2	9	79	16	51	41	1	0	56	1.10
15003884--15003925	17	2.5	17	80	11	59	38	2	0	59	1.10
15005164--15005197	17	1.9	18	88	5	52	55	8	8	26	1.59
15017658--15017788	22	5.8	23	72	10	85	23	5	27	43	1.75
15017687--15017788	44	2.3	44	84	6	125	21	4	28	45	1.72
15020292--15020399	56	1.9	56	92	0	180	55	5	19	19	1.62
15023588--15023664	22	3.5	22	77	19	65	24	1	28	45	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15023630--15023713	7	11.2	8	74	12	54	17	2	32	47	1.61
15023615--15023707	22	4.1	22	75	16	75	21	2	30	46	1.63
15023611--15023699	15	5.9	15	74	10	65	23	2	31	42	1.66
15027126--15027159	14	2.5	13	86	9	50	52	8	0	38	1.33
15027151--15027523	182	2.0	182	96	0	683	39	10	9	39	1.73
15027885--15027936	3	17.7	3	84	11	72	69	0	0	30	0.89
15028255--15028284	16	1.9	15	93	6	51	6	20	0	73	1.05
15037047--15037122	35	2.2	35	90	6	120	31	5	9	53	1.55
15038119--15038144	2	13.0	2	100	0	52	50	0	0	50	1.00
15039193--15039236	22	2.0	22	95	0	79	31	11	13	43	1.80
15039930--15040150	117	1.9	117	96	0	406	19	16	13	50	1.78
15044958--15045035	36	2.2	35	78	17	81	39	1	1	57	1.15
15045083--15045142	29	2.0	29	83	3	75	58	3	0	38	1.15
15055673--15055707	11	3.1	11	88	8	52	31	0	0	68	0.90
15056037--15056142	39	2.7	39	86	0	158	39	12	11	36	1.79
15061706--15062294	18	32.8	18	68	7	113	29	13	16	41	1.86
15061731--15061821	34	2.7	35	83	6	98	27	15	17	39	1.90
15061706--15061823	52	2.3	51	83	5	139	25	16	18	39	1.91
15062059--15062273	72	3.0	72	77	4	209	29	15	15	38	1.89
15062151--15062294	54	2.7	54	76	4	155	31	14	13	40	1.84
15062272--15062396	34	3.6	33	76	8	117	30	11	11	47	1.74
15062344--15062406	18	3.5	18	70	20	51	28	6	14	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15062337--15062387	17	2.9	17	75	13	50	35	9	9	45	1.71
15062344--15062422	10	8.7	9	71	23	51	29	7	12	50	1.68
15062421--15062462	21	2.0	21	86	4	59	33	7	9	50	1.62
15063329--15063369	18	2.1	21	86	13	61	17	7	24	51	1.70
15063873--15063916	19	2.4	18	85	7	61	27	0	2	70	0.99
15063886--15063927	19	2.2	19	83	8	50	26	0	4	69	1.08
15066055--15066132	33	2.4	34	80	6	88	46	14	6	33	1.70
15067394--15067425	17	1.9	17	93	6	57	53	3	0	43	1.16
15067394--15067459	25	2.6	26	79	13	75	56	1	0	42	1.08
15067716--15067752	20	2.0	20	84	10	51	27	5	2	64	1.28
15067738--15067770	10	3.4	10	91	4	50	15	0	12	72	1.12
15067737--15067761	9	2.8	9	100	0	50	20	0	8	72	1.10
15067777--15067801	13	1.9	13	100	0	50	16	0	0	84	0.63
15067772--15067828	16	3.8	15	77	15	64	26	1	0	71	0.95
15068077--15068107	11	2.8	11	95	0	53	32	0	0	67	0.91
15069410--15069466	25	2.3	25	78	0	60	38	5	0	56	1.22
15071023--15071049	5	5.4	5	100	0	54	18	0	0	81	0.69
15071743--15071778	18	2.0	18	94	0	63	30	16	16	36	1.91
15072519--15072551	17	1.9	17	88	11	50	21	0	0	78	0.75
15072767--15072821	26	2.1	26	83	10	67	18	1	3	76	1.02
15073667--15073735	19	3.8	18	75	7	61	18	1	1	78	0.91
15073676--15073730	20	2.7	21	78	13	53	21	1	1	74	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15074222--15074285	25	2.6	26	72	20	66	40	0	0	59	0.97
15074227--15074270	16	2.7	15	80	13	52	34	0	0	65	0.93
15074598--15074641	17	2.6	17	85	3	54	43	0	4	52	1.22
15074599--15074670	29	2.5	28	82	15	92	43	0	2	54	1.15
15077349--15077392	22	2.0	22	81	4	52	40	4	2	52	1.34
15080399--15080461	26	2.4	26	91	0	99	44	6	3	46	1.45
15087440--15087577	51	2.7	50	84	4	168	52	7	13	26	1.66
15089616--15089683	31	2.2	30	82	12	77	52	5	1	39	1.34
15090640--15090673	15	2.2	16	94	5	61	32	0	2	64	1.08
15105644--15105689	20	2.4	19	85	3	56	65	4	0	30	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130