genome.fa.s556.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  11  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3075971--3076027	21	2.7	21	80	2	60	57	0	3	38	1.16
3082235--3082294	11	5.1	11	76	15	50	33	0	1	65	1.03
3082209--3082319	25	4.4	25	75	14	77	33	0	2	63	1.15
3082206--3082319	14	8.7	13	69	18	58	33	0	2	63	1.15
3082317--3082350	14	2.4	14	95	0	59	32	0	0	67	0.91
3082231--3082346	23	4.8	23	76	15	85	34	0	1	62	1.11
3082303--3082356	23	2.3	23	81	6	56	37	0	1	61	1.07
3086415--3086459	23	2.0	23	83	8	58	57	2	0	40	1.11
3086935--3086962	2	14.0	2	100	0	56	50	0	0	50	1.00
3094508--3094631	61	2.0	61	98	0	239	35	12	22	29	1.91
3097778--3097807	1	30.0	1	100	0	60	100	0	0	0	0.00
3100088--3100126	17	2.4	17	82	4	53	46	5	5	43	1.48
3101773--3101829	26	2.2	26	81	12	64	36	3	0	59	1.14
3103211--3103258	22	2.1	23	85	11	64	45	0	0	54	0.99
3106948--3106979	2	16.0	2	100	0	64	50	0	0	50	1.00
3107157--3107204	24	2.0	24	83	0	60	37	2	12	47	1.53
3107219--3107294	31	2.5	31	89	6	111	50	14	6	28	1.68
3107389--3107416	2	14.0	2	100	0	56	50	0	0	50	1.00
3122892--3122932	21	1.9	21	85	14	57	36	4	2	56	1.34
3127304--3127334	2	15.5	2	100	0	62	48	0	0	51	1.00
3140500--3140531	16	2.0	16	100	0	64	43	18	0	37	1.51
3143003--3143032	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3144810--3144894	3	29.0	3	76	9	77	57	2	3	36	1.29
3144846--3144929	31	2.7	29	81	17	96	54	3	4	36	1.39
3144846--3144911	34	2.0	32	88	5	96	54	4	3	37	1.36
3162351--3162400	23	2.1	23	85	10	66	68	4	0	28	1.08
3163641--3163714	21	3.3	21	75	20	71	44	0	1	54	1.08
3163647--3163708	22	2.7	24	74	23	69	46	0	1	51	1.10
3164202--3164264	27	2.3	27	86	5	83	50	1	0	47	1.10
3170506--3170538	16	2.0	17	88	5	50	27	27	12	33	1.92
3177148--3177175	8	3.5	8	100	0	56	21	0	10	67	1.20
3187659--3187683	13	1.9	13	100	0	50	48	0	16	36	1.46
3188610--3188650	19	2.1	20	86	13	59	58	4	0	36	1.20
3189093--3189196	33	3.2	32	90	6	156	42	4	6	46	1.51
3189591--3189631	21	2.0	21	90	4	66	29	9	14	46	1.77
3192514--3192552	15	2.5	16	87	4	53	69	0	0	30	0.89
3197639--3197700	15	4.2	15	73	17	58	69	0	0	30	0.89
3197642--3197708	31	2.1	33	86	10	95	67	0	0	32	0.91
3201281--3201340	30	2.0	30	100	0	120	36	3	16	43	1.65
3205662--3205849	95	2.0	95	97	0	358	32	21	12	32	1.91
3210110--3210492	184	2.1	186	85	1	518	33	14	13	38	1.85
3210283--3210742	249	1.9	247	88	2	697	34	14	14	37	1.86
3210530--3212024	185	8.1	185	82	3	1574	35	13	11	39	1.82
3212612--3212670	28	2.1	28	83	0	73	27	0	20	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3212673--3212742	12	5.7	12	70	12	52	20	5	31	42	1.75
3212633--3212742	25	4.3	25	76	5	96	22	3	29	44	1.70
3216473--3216512	20	2.0	20	100	0	80	25	0	15	60	1.35
3229252--3229281	2	15.5	2	93	6	53	53	0	0	46	1.00
3230937--3230997	14	4.6	14	75	19	67	45	1	1	50	1.21
3230931--3230998	25	2.6	25	75	15	66	48	1	1	48	1.19
3230923--3231002	39	2.1	38	95	2	142	48	1	2	47	1.23
3232444--3232472	3	9.7	3	100	0	58	34	0	0	65	0.93
3236898--3236966	14	5.3	14	74	19	69	52	1	1	44	1.19
3236898--3236957	25	2.3	27	80	13	81	51	1	1	45	1.21
3236891--3236970	39	2.1	38	90	2	124	51	1	2	45	1.22
3246170--3246200	2	16.0	2	93	6	55	51	0	0	48	1.00
3246172--3246200	15	1.9	15	100	0	58	51	0	0	48	1.00
3255756--3255811	27	2.1	27	96	0	103	30	26	7	35	1.83
3255921--3256084	84	2.0	84	91	2	267	25	20	14	40	1.90
3257591--3257633	18	2.3	19	80	4	52	55	2	2	39	1.25
3260140--3260183	22	2.0	21	82	4	52	56	4	0	38	1.20
3260966--3261018	24	2.3	22	75	15	54	45	0	1	52	1.11
3265972--3266003	11	2.9	11	95	0	55	43	0	3	53	1.16
3265883--3266124	121	2.0	119	95	4	434	39	14	11	34	1.82
3266096--3266133	2	19.0	2	100	0	76	50	0	0	50	1.00
3266628--3266662	2	18.0	2	88	5	54	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3276137--3276330	97	2.0	97	91	0	316	29	29	18	22	1.97
3276682--3276706	8	3.1	8	100	0	50	24	0	0	76	0.80
3277751--3277793	18	2.3	19	80	4	52	55	2	2	39	1.25
3280300--3280343	22	2.0	21	82	4	52	56	4	0	38	1.20
3281127--3281179	24	2.3	22	75	15	54	45	0	1	52	1.11
3281250--3281312	30	2.1	30	81	0	72	36	9	1	52	1.44
3281264--3281348	31	2.8	31	89	5	120	35	2	2	60	1.23
3281376--3281452	28	2.7	28	82	11	95	55	1	1	41	1.16
3281381--3281452	29	2.5	29	82	13	94	55	1	1	41	1.17
3281506--3281541	17	2.1	18	89	5	56	5	11	2	80	0.98
3282283--3282345	32	2.0	32	87	0	90	28	0	19	52	1.46
3282474--3282521	22	2.2	22	100	0	96	31	14	12	41	1.83
3305233--3305267	16	2.2	16	89	0	52	28	0	8	62	1.24
3310428--3310457	12	2.5	12	88	0	51	60	0	0	40	0.97
3314061--3314086	2	13.0	2	100	0	52	50	0	0	50	1.00
3317246--3317288	21	2.0	21	82	8	52	53	2	2	41	1.26
3317347--3317393	16	2.9	16	75	15	51	44	0	4	51	1.21
3317460--3317492	17	2.0	16	94	5	57	45	0	0	54	0.99
3320060--3320093	2	17.0	2	93	0	59	0	52	0	47	1.00
3320887--3321049	83	2.0	83	90	0	254	24	15	15	44	1.85
3324697--3324812	58	2.0	58	100	0	232	31	15	15	37	1.89
3325494--3325548	27	2.1	26	82	3	65	38	18	0	43	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3326968--3327031	29	2.2	30	83	8	87	45	3	4	46	1.39
3329545--3329578	9	3.7	9	92	4	50	88	5	0	5	0.64
3331357--3331425	31	2.3	28	76	11	75	55	0	4	40	1.20
3341661--3341691	16	1.9	16	93	0	53	9	19	3	67	1.33
3343634--3343660	13	2.1	13	100	0	54	29	22	22	25	1.99
3344649--3344681	13	2.5	13	86	13	50	78	0	0	21	0.75
3344689--3344726	11	3.5	11	79	13	51	63	0	0	36	0.95
3344692--3344740	21	2.3	22	85	3	64	59	0	0	40	0.98
3345957--3345987	15	2.1	15	100	0	62	35	0	0	64	0.94
3350548--3350589	2	21.0	2	100	0	84	50	0	50	0	1.00
3357285--3357327	20	2.1	21	83	12	54	30	2	2	65	1.18
3361536--3361582	2	24.0	2	80	4	51	53	2	0	44	1.12
3361744--3362269	270	1.9	272	91	2	867	44	9	3	42	1.55
3362353--3362410	19	3.0	21	82	9	70	36	1	6	55	1.37
3362639--3362681	21	2.1	21	83	12	54	37	0	4	58	1.19
3362792--3362844	23	2.2	25	77	16	58	58	5	0	35	1.22
3364412--3364451	2	20.0	2	84	0	53	47	7	0	45	1.31
3369501--3369538	20	1.9	20	89	10	60	15	5	13	65	1.43
3369888--3369927	19	2.1	19	90	0	62	27	15	15	42	1.86
3370366--3370398	6	5.7	6	85	7	50	30	0	3	66	1.06
3370365--3370407	17	2.5	17	80	3	50	27	2	2	67	1.15
3370479--3370511	15	2.3	15	89	5	50	63	3	0	33	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3374226--3374292	17	3.8	17	79	15	73	77	0	13	8	0.98
3374226--3374284	20	3.2	19	88	9	86	77	0	13	8	0.97
3375526--3375910	46	8.5	46	82	7	416	38	8	13	38	1.76
3375561--3375954	21	17.8	21	72	15	233	39	8	14	37	1.77
3375984--3376054	21	3.4	21	79	9	74	40	9	8	40	1.69
3376083--3376134	21	2.5	20	84	9	61	36	9	17	36	1.82
3375882--3376133	100	2.5	100	80	4	310	37	9	16	36	1.82
3376284--3376352	23	3.1	23	83	4	70	39	13	15	31	1.86
3376537--3376633	41	2.4	41	84	3	124	28	11	13	46	1.78
3376559--3376652	41	2.3	41	80	7	102	29	14	13	41	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130