genome.fa.s556.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  67  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14015292--14015844	42	13.5	41	89	4	837	23	16	23	37	1.94
14015292--14015844	164	3.4	163	89	4	862	23	16	23	37	1.94
14015851--14015900	1	50.0	1	79	0	55	90	8	0	2	0.54
14015859--14015900	9	4.6	9	94	5	75	90	9	0	0	0.45
14015851--14015900	18	2.8	17	88	8	73	90	8	0	2	0.54
14016260--14016318	20	2.9	20	72	20	59	22	3	5	69	1.23
14016274--14016334	26	2.3	26	80	5	68	16	4	1	77	1.03
14018779--14019046	58	4.5	58	85	9	326	46	6	13	33	1.68
14018779--14019070	118	2.4	122	86	7	409	46	6	13	33	1.69
14018766--14019077	58	5.2	58	80	9	315	46	7	12	34	1.68
14024367--14024506	74	1.9	74	98	0	271	35	15	12	35	1.86
14024707--14024760	22	2.4	22	81	3	63	37	11	14	37	1.82
14024561--14024834	96	2.9	96	85	0	350	36	12	16	35	1.86
14024753--14024908	74	2.1	74	89	2	233	34	13	16	35	1.88
14025441--14025526	41	2.1	41	82	4	102	34	15	18	31	1.92
14025543--14025938	44	9.3	42	76	8	277	33	13	18	35	1.89
14025543--14025938	41	9.3	41	76	7	267	33	13	18	35	1.89
14025543--14025938	85	4.6	85	79	4	397	33	13	18	35	1.89
14025740--14025768	15	1.9	15	100	0	58	48	13	17	20	1.81
14025543--14025864	168	1.9	170	82	2	407	32	12	17	37	1.87
14025826--14026018	100	1.9	99	85	6	264	33	14	20	31	1.93
14025911--14025953	15	2.9	15	96	0	77	46	18	25	9	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14025992--14026041	20	2.5	20	100	0	100	28	14	16	42	1.86
14026032--14026069	15	2.6	15	87	4	51	44	10	21	23	1.83
14025892--14026141	119	2.1	122	85	3	339	33	14	18	34	1.91
14027549--14027594	20	2.4	19	81	3	56	71	8	10	8	1.30
14029281--14029320	18	2.2	19	86	4	55	57	15	12	15	1.66
14031504--14031994	269	1.8	270	90	0	786	44	7	4	42	1.54
14032150--14032228	32	2.5	32	89	2	115	30	6	13	49	1.67
14034281--14034312	12	2.7	12	90	0	55	40	0	9	50	1.35
14034282--14034321	10	3.8	10	84	12	53	40	2	7	50	1.44
14036428--14036457	16	1.9	15	93	6	51	0	0	50	50	1.00
14038988--14039052	26	2.6	26	76	13	64	23	1	10	64	1.33
14039386--14039430	13	3.4	14	76	11	51	73	4	0	22	1.01
14044411--14044461	13	3.9	13	82	12	61	31	0	1	66	1.03
14044412--14044461	19	2.6	19	72	27	52	32	0	2	66	1.03
14046600--14046648	19	2.6	19	87	3	64	55	0	0	44	0.99
14047550--14047582	16	2.0	17	88	5	50	36	0	0	63	0.95
14048132--14048191	24	2.5	26	76	15	65	11	11	6	70	1.34
14050811--14050919	30	3.6	30	87	2	155	10	27	5	56	1.54
14050811--14050925	61	1.9	60	90	1	185	10	26	5	57	1.53
14058214--14058266	26	2.1	26	86	10	74	33	1	1	62	1.17
14058885--14058959	22	3.5	21	73	17	57	45	0	2	52	1.15
14062630--14062662	15	2.2	15	94	0	57	48	24	15	12	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14065735--14065815	32	2.5	32	85	2	90	24	8	7	59	1.53
14065751--14065815	32	2.0	32	90	3	103	27	9	6	56	1.54
14066430--14066657	114	2.0	114	97	0	429	45	13	10	30	1.77
14068179--14068314	42	3.3	39	74	14	112	52	17	6	23	1.68
14068202--14068314	42	2.7	42	79	4	113	55	17	5	21	1.61
14068298--14068427	42	3.1	41	78	6	118	51	20	9	18	1.73
14080073--14080097	12	2.1	12	100	0	50	16	0	8	76	1.02
14089788--14090397	333	1.8	333	83	2	814	29	23	18	27	1.98
14095120--14095352	116	2.0	116	83	0	295	45	10	15	28	1.79
14099404--14099674	50	5.4	50	74	8	178	32	9	17	40	1.82
14099441--14099654	100	2.2	100	81	5	247	30	9	18	41	1.83
14102202--14102247	24	1.9	24	82	8	58	54	10	2	32	1.47
14106262--14106322	30	2.0	30	87	0	86	21	36	4	37	1.75
14109395--14109810	140	3.0	137	75	8	403	36	9	5	49	1.58
14111052--14111106	25	2.1	25	83	10	65	69	1	21	7	1.23
14117365--14117414	24	2.1	24	82	14	59	40	16	12	32	1.84
14117417--14117498	18	4.1	20	71	14	78	47	8	6	37	1.59
14117507--14117568	29	2.1	29	82	11	74	56	8	4	30	1.49
14117619--14117680	33	1.9	32	83	9	81	58	11	3	27	1.48
14117621--14117726	53	2.0	53	94	0	185	58	11	2	27	1.47
14117745--14117853	20	5.7	20	78	11	93	52	11	6	30	1.62
14117762--14117791	15	2.0	15	93	0	51	56	6	10	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14117777--14117853	41	1.9	41	83	2	102	50	11	6	31	1.64
14117841--14117903	32	2.0	33	84	6	85	52	7	7	31	1.59
14117876--14117913	20	2.0	18	90	10	58	47	10	7	34	1.67
14118855--14118957	43	2.4	44	81	4	129	45	15	11	27	1.81
14119130--14119154	13	1.9	13	100	0	50	40	12	24	24	1.88
14120359--14120389	15	2.1	15	93	0	53	12	9	0	77	0.99
14120380--14120428	19	2.7	17	81	9	53	4	10	6	79	1.03
14126208--14126256	24	2.0	24	92	0	80	55	16	2	26	1.52
14126321--14126388	18	3.7	18	75	16	59	52	7	2	36	1.44
14126327--14126405	35	2.3	33	77	16	79	50	6	3	39	1.46
14126331--14126416	38	2.4	35	78	7	91	48	9	3	38	1.52
14126461--14126575	23	4.9	25	69	22	97	59	9	5	26	1.50
14126461--14126575	47	2.5	47	84	7	146	59	9	5	26	1.50
14126533--14126657	53	2.4	52	86	6	162	59	8	5	27	1.48
14126586--14126633	21	2.3	20	82	10	60	64	6	2	27	1.28
14126677--14126761	20	4.2	20	80	0	89	51	8	9	30	1.63
14126759--14126798	2	21.5	2	80	14	50	50	2	0	47	1.14
14126759--14126798	15	2.7	15	92	0	62	50	2	0	47	1.14
14126759--14126798	13	2.9	13	88	7	53	50	2	0	47	1.14
14128023--14128067	16	2.8	16	79	0	54	55	6	6	31	1.52
14128005--14128067	32	1.9	33	83	3	83	52	6	6	34	1.52
14128048--14128098	20	2.5	20	96	0	93	47	11	7	33	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14128006--14128112	52	2.1	50	79	5	117	51	7	7	33	1.58
14128704--14128753	26	1.9	26	83	0	64	70	6	0	24	1.10
14130950--14131092	63	2.3	62	79	3	144	39	11	16	32	1.85
14131666--14131735	35	2.0	35	94	0	122	35	14	17	32	1.90
14132517--14132546	13	2.3	13	94	0	51	20	6	3	70	1.25
14133389--14133498	3	37.7	3	71	17	72	26	0	3	69	1.11
14133381--14133444	23	2.7	23	83	9	85	26	3	1	68	1.13
14133461--14133503	17	2.5	18	88	11	72	18	0	0	81	0.69
14133464--14133501	11	3.5	11	86	13	60	15	0	0	84	0.63
14133464--14133501	5	6.8	6	88	11	55	15	0	0	84	0.63
14133461--14133503	12	3.8	12	81	12	63	18	0	0	81	0.69
14133532--14133690	58	2.8	56	83	10	187	42	6	14	37	1.71
14133549--14133635	29	3.0	29	68	31	78	41	6	13	37	1.72
14135999--14136063	34	1.9	34	83	0	85	41	7	9	41	1.65
14151690--14151728	16	2.4	16	91	0	60	43	12	2	41	1.56
14153614--14153642	14	2.1	14	100	0	58	27	27	13	31	1.94
14154447--14154472	2	13.0	2	100	0	52	50	0	0	50	1.00
14155000--14155029	7	4.4	7	95	4	53	10	0	0	90	0.47
14157677--14157714	2	19.0	2	100	0	76	50	0	0	50	1.00
14158583--14158616	2	17.0	2	100	0	68	50	0	50	0	1.00
14162674--14162698	11	2.3	11	100	0	50	0	28	0	72	0.86
14164908--14164970	23	2.7	23	78	7	74	31	6	11	50	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14164908--14164973	21	2.9	21	72	23	62	31	6	10	51	1.61
14169387--14169425	13	3.1	13	88	3	53	82	0	15	2	0.79
14170833--14170916	44	1.9	44	87	4	125	33	9	13	44	1.76
14171074--14171116	17	2.5	17	96	3	77	34	11	11	41	1.78
14171074--14171124	17	2.9	17	91	2	66	35	11	11	41	1.78
14171199--14171240	18	2.3	18	87	0	66	30	14	4	50	1.63
14171248--14171289	16	2.5	17	88	3	59	33	9	14	42	1.78
14171057--14171290	103	2.3	102	75	5	229	31	12	11	43	1.79
14171264--14171334	17	4.2	17	83	5	90	35	9	15	39	1.81
14171274--14171315	16	2.6	16	84	3	57	35	9	16	38	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130