genome.fa.s556.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  49  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11247849--11247938	14	6.9	13	68	22	57	52	1	2	44	1.20
11248137--11249354	180	6.8	181	74	7	823	41	10	7	40	1.68
11249797--11249876	19	4.4	19	69	21	55	53	1	0	45	1.08
11249780--11249876	33	2.9	34	71	18	85	53	1	0	45	1.07
11249835--11249870	15	2.5	14	86	8	54	55	0	0	44	0.99
11249971--11250004	16	2.1	16	94	0	59	38	0	0	61	0.96
11250014--11250060	20	2.3	21	82	10	62	51	0	0	48	1.00
11250017--11250071	16	3.4	16	77	7	58	50	1	0	47	1.11
11250302--11250613	172	1.8	172	80	10	379	39	8	8	43	1.66
11251213--11251249	13	2.9	13	80	19	51	62	0	0	37	0.96
11251505--11251658	47	3.3	47	69	14	120	48	1	2	47	1.27
11251602--11251641	16	2.7	16	81	18	59	50	0	0	50	1.00
11252309--11252368	21	2.8	20	73	11	57	33	3	5	58	1.36
11252919--11252963	20	2.4	18	80	20	56	66	0	0	33	0.92
11253099--11253135	5	6.7	6	93	6	53	54	0	0	45	1.00
11253132--11253186	25	2.2	25	83	6	67	40	1	0	58	1.09
11253478--11254298	181	4.6	181	79	7	734	40	7	9	41	1.67
11254930--11254964	10	3.5	10	96	0	61	14	22	11	51	1.74
11256811--11256845	16	2.2	16	89	0	52	40	11	14	34	1.82
11260951--11260990	21	1.9	21	90	10	64	50	5	0	45	1.23
11261667--11261697	14	2.2	14	94	0	53	54	0	0	45	0.99
11262384--11262424	20	2.2	18	91	8	64	43	2	0	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11262392--11262477	20	4.3	19	77	20	61	45	1	1	52	1.16
11262439--11262477	17	2.3	17	86	8	53	51	0	0	48	1.00
11262626--11262666	18	2.2	19	86	4	57	46	4	0	48	1.23
11262679--11262713	10	3.2	11	88	12	54	42	2	0	54	1.15
11262680--11262733	23	2.4	21	84	9	63	48	1	0	50	1.11
11262692--11262744	25	2.1	25	82	6	63	45	0	0	54	0.99
11263449--11263479	16	1.9	16	93	0	53	48	6	3	41	1.45
11263961--11264007	20	2.4	19	80	16	51	42	0	4	53	1.20
11264470--11264535	18	3.4	17	74	24	51	57	0	3	39	1.14
11264452--11264516	24	2.7	24	79	9	69	52	0	1	46	1.10
11264538--11264584	14	3.5	14	75	18	55	53	0	0	46	1.00
11264526--11264584	19	3.0	19	80	5	55	52	0	1	45	1.10
11264606--11264660	24	2.2	26	81	18	73	50	1	1	45	1.22
11265733--11265787	10	5.4	10	72	20	51	50	1	0	47	1.11
11266114--11266177	23	2.8	23	75	15	62	45	1	3	50	1.27
11266156--11266243	34	2.6	34	78	5	88	48	0	0	51	1.00
11266223--11266260	20	1.9	19	85	15	51	47	0	0	52	1.00
11266378--11266431	23	2.2	25	78	15	60	33	5	1	59	1.31
11266445--11266498	12	4.8	11	78	10	56	44	0	1	53	1.11
11267933--11268025	25	3.5	26	76	20	93	60	0	1	38	1.04
11267933--11268020	17	4.9	17	71	22	56	60	0	1	38	1.04
11267945--11268032	9	9.3	9	71	18	63	57	0	1	40	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11268063--11268920	179	4.8	179	77	8	793	41	9	7	40	1.67
11268063--11268920	355	2.4	357	79	6	898	41	9	7	40	1.67
11269708--11269756	18	2.8	17	78	12	55	38	2	10	48	1.48
11269857--11270186	177	1.9	178	82	3	423	40	11	7	40	1.69
11270615--11270653	6	6.7	6	82	5	53	48	2	2	46	1.29
11270615--11270654	17	2.3	17	86	4	53	50	2	2	45	1.28
11270740--11270798	22	2.6	24	76	17	63	45	0	3	50	1.18
11270860--11270902	21	2.0	21	82	8	52	44	2	0	53	1.13
11270864--11270902	18	2.0	20	85	14	55	43	2	0	53	1.14
11271393--11271443	18	2.8	17	75	18	50	49	3	5	41	1.45
11271410--11271460	22	2.3	21	75	15	50	49	3	1	45	1.32
11271560--11271615	13	4.2	13	80	8	60	51	0	0	48	1.00
11272028--11272074	21	2.1	24	81	18	57	46	2	0	51	1.13
11272343--11272376	15	2.3	15	90	10	52	52	0	2	44	1.16
11272352--11272406	26	2.1	26	86	6	76	58	0	0	41	0.98
11272952--11273005	19	2.8	20	80	11	67	46	1	0	51	1.11
11273005--11273052	13	3.7	13	81	15	55	45	6	0	47	1.27
11272952--11273042	42	2.3	40	82	16	109	45	3	0	51	1.17
11273292--11273376	12	7.0	12	70	21	52	48	1	2	48	1.22
11273252--11273388	61	2.2	61	81	11	154	48	0	3	46	1.24
11273589--11273626	19	2.0	19	89	0	58	47	0	0	52	1.00
11273588--11273688	32	3.2	31	72	10	89	41	3	0	54	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11273615--11273697	42	2.0	42	83	9	107	38	4	0	56	1.21
11273866--11273910	22	2.0	22	86	0	63	48	4	2	44	1.35
11274010--11274041	16	1.9	17	93	6	57	37	3	0	59	1.13
11274022--11274075	20	2.7	20	77	13	65	42	0	3	53	1.18
11274178--11274219	18	2.3	19	80	16	52	47	0	4	47	1.23
11274485--11274521	18	2.1	18	90	10	58	40	2	0	56	1.13
11274686--11274746	18	3.4	18	78	13	63	49	1	4	44	1.33
11275094--11275178	12	7.6	11	69	23	54	56	1	1	41	1.14
11275133--11275179	17	2.8	17	86	0	67	57	0	0	42	0.98
11275629--11275717	10	9.0	10	69	22	55	49	0	2	48	1.13
11275623--11275717	48	2.0	47	84	10	122	50	0	2	47	1.13
11275644--11275754	25	4.4	25	67	22	72	47	2	1	47	1.26
11275624--11275755	60	2.2	61	80	12	141	47	2	1	48	1.23
11276471--11276516	14	3.2	14	78	6	56	45	2	2	50	1.26
11276697--11276742	8	5.9	8	78	14	51	50	2	0	47	1.13
11276826--11276884	21	2.8	21	79	5	66	49	0	5	45	1.24
11276838--11276934	10	9.5	10	68	14	56	43	1	4	51	1.27
11276847--11276901	24	2.3	24	83	0	65	45	0	7	47	1.30
11276893--11276987	20	4.8	20	67	22	58	38	3	2	55	1.27
11277424--11277483	26	2.3	26	77	8	68	36	1	5	56	1.31
11278104--11278151	16	3.0	15	77	16	51	45	2	2	50	1.25
11278933--11279020	20	4.1	20	75	17	70	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11278930--11279007	33	2.5	31	78	17	88	47	0	0	52	1.00
11279032--11279078	18	2.4	20	86	10	62	51	2	0	46	1.13
11279519--11279582	13	4.9	14	70	22	50	43	0	0	56	0.99
11279733--11280422	180	3.8	176	74	10	412	41	10	7	40	1.68
11280014--11281078	536	2.0	531	81	6	1226	41	9	7	41	1.66
11279739--11281449	363	4.8	360	76	5	1353	41	9	8	40	1.68
11279737--11281448	181	9.6	180	76	6	1233	41	9	8	40	1.68
11281460--11281507	14	3.4	14	82	2	60	47	4	0	47	1.21
11282300--11282366	6	11.8	6	73	17	54	46	0	1	52	1.09
11282287--11282348	33	1.9	32	83	9	81	41	0	3	54	1.16
11282342--11282376	18	1.9	18	88	11	54	51	0	0	48	1.00
11282521--11282575	17	3.1	17	75	14	58	49	0	1	49	1.11
11283036--11283629	179	3.3	178	85	4	721	42	7	9	40	1.66
11283810--11283849	20	1.9	21	85	10	55	50	2	2	45	1.28
11284114--11284139	12	2.2	12	100	0	52	7	7	0	84	0.77
11286595--11286632	20	1.9	20	100	0	76	78	5	10	5	1.06
11286600--11286659	18	3.4	17	82	13	68	81	3	10	5	0.95
11286598--11286642	20	2.2	20	88	0	63	84	4	8	2	0.84
11286608--11286665	9	6.4	9	80	13	66	79	1	12	6	1.00
11286600--11286651	27	1.9	27	88	7	79	82	3	9	3	0.91
11286697--11286743	23	2.0	23	87	0	67	44	2	2	51	1.25
11286860--11286894	13	2.8	12	87	8	52	48	8	0	42	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11287620--11287664	20	2.2	21	88	4	65	33	0	0	66	0.92
11287619--11287672	21	2.6	21	82	11	67	35	0	0	64	0.94
11287619--11287696	22	3.7	21	78	13	63	38	0	1	60	1.05
11287629--11287680	26	2.0	26	85	7	70	38	0	0	61	0.96
11287615--11287687	26	2.7	26	77	10	67	38	0	1	60	1.06
11287753--11287800	25	1.9	25	83	8	62	60	2	2	35	1.20
11287762--11287815	13	4.3	12	88	6	72	61	3	0	35	1.14
11287762--11287815	25	2.2	25	86	6	74	61	3	0	35	1.14
11288611--11288739	35	3.7	36	70	18	96	47	1	0	50	1.16
11288684--11288737	21	2.4	23	80	19	62	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130