genome.fa.s556.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  103  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20190788--20190823	15	2.4	15	90	0	54	36	19	5	38	1.75
20195048--20195237	95	2.0	95	98	0	371	30	10	15	44	1.80
20196292--20196446	84	1.8	84	83	2	204	47	9	6	36	1.61
20196416--20196515	51	1.9	52	82	6	123	48	10	8	34	1.66
20196619--20196762	63	2.3	63	75	10	154	44	6	7	41	1.58
20196740--20196779	17	2.4	17	91	0	62	50	5	0	45	1.23
20204751--20204785	10	3.4	10	92	4	52	5	17	0	77	0.96
20204751--20204790	10	3.9	11	87	6	50	7	17	0	75	1.03
20204852--20204885	14	2.4	14	85	0	50	38	2	8	50	1.49
20205100--20205142	17	2.3	19	84	11	54	30	0	25	44	1.55
20205854--20205882	14	2.1	14	100	0	58	86	0	0	13	0.58
20206051--20206174	32	3.9	31	74	10	99	53	8	2	36	1.44
20207096--20207121	13	2.0	13	100	0	52	30	0	15	53	1.42
20207196--20207234	17	2.2	18	86	13	55	51	2	5	41	1.38
20210771--20210808	2	19.0	2	94	0	67	47	0	2	50	1.15
20214587--20214675	11	8.1	11	69	14	58	19	4	3	73	1.15
20214662--20214700	15	2.6	16	88	8	55	25	2	2	69	1.14
20214754--20214811	22	2.6	23	81	10	66	31	5	5	58	1.42
20215656--20215787	8	14.4	9	74	18	66	22	0	1	75	0.94
20215659--20215794	22	6.1	23	76	14	117	23	0	1	74	0.95
20215674--20215800	4	30.8	4	76	19	79	22	1	1	74	1.00
20215657--20215800	9	15.9	9	81	14	108	22	1	1	74	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20215646--20215800	17	8.9	16	73	19	91	21	1	1	75	0.97
20215813--20216044	59	3.9	59	74	16	183	45	6	12	35	1.67
20215834--20216109	122	2.3	119	88	8	389	42	6	13	37	1.69
20226512--20226590	8	9.9	8	93	4	115	81	0	8	10	0.89
20226513--20226591	41	2.0	40	92	2	131	82	0	7	10	0.85
20227583--20227733	82	1.8	82	88	2	232	24	17	21	36	1.94
20227583--20227730	41	3.6	41	87	0	206	25	17	20	36	1.94
20227707--20227754	25	1.9	25	100	0	96	29	16	18	35	1.93
20227666--20227799	66	2.0	66	92	0	223	26	17	21	34	1.96
20227733--20227910	41	4.5	40	84	5	227	25	17	20	35	1.95
20227987--20228175	43	4.3	44	79	12	210	22	12	23	41	1.88
20228329--20228433	11	9.1	11	79	12	95	19	3	1	75	1.05
20228329--20228403	35	2.1	35	82	4	89	18	2	2	76	1.03
20228380--20228428	21	2.4	21	80	13	57	20	2	2	75	1.00
20228539--20228574	19	1.9	19	88	5	56	33	2	0	63	1.08
20229242--20229354	9	11.9	9	75	15	63	21	0	3	74	1.02
20229252--20229354	15	6.7	16	68	22	60	21	0	3	73	1.05
20229267--20229360	4	23.8	4	72	22	51	22	2	3	72	1.10
20229311--20229366	23	2.4	23	82	8	69	17	5	0	76	0.96
20229386--20229668	60	4.7	60	79	10	276	44	5	12	38	1.65
20229386--20229668	123	2.4	119	81	13	355	44	5	12	38	1.65
20234651--20234692	14	2.9	15	72	13	52	35	7	0	57	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20236386--20236430	12	3.9	11	83	16	56	82	0	11	6	0.84
20236386--20236430	24	2.0	23	91	8	74	82	0	11	6	0.84
20236386--20236425	13	3.3	13	83	16	59	80	0	12	7	0.91
20236398--20236433	19	1.9	18	88	5	54	80	0	13	5	0.88
20237964--20238010	22	2.1	23	88	4	69	38	2	12	46	1.54
20238274--20238345	9	8.0	8	75	15	54	59	4	0	36	1.17
20240546--20240595	22	2.2	23	86	10	68	58	4	6	32	1.41
20241026--20241055	15	2.0	15	93	0	51	30	0	0	70	0.88
20241511--20241566	17	3.2	17	76	16	60	46	1	0	51	1.11
20241515--20241567	16	3.1	16	75	17	52	45	1	0	52	1.11
20241619--20241658	17	2.2	19	86	8	57	60	2	2	35	1.24
20243569--20243593	4	6.2	4	100	0	50	48	0	0	52	1.00
20255683--20255712	12	2.6	11	90	10	51	10	0	10	80	0.92
20255943--20255995	26	2.0	26	92	0	88	26	11	3	58	1.49
20256189--20256226	2	19.0	2	100	0	76	50	0	0	50	1.00
20259118--20259195	33	2.4	32	82	4	93	64	6	2	26	1.31
20259155--20259212	29	2.1	27	87	9	82	62	3	0	34	1.12
20259148--20259226	30	2.7	29	88	4	104	65	3	1	29	1.17
20259961--20260076	52	2.2	52	83	4	135	33	18	18	30	1.94
20262976--20263014	20	2.0	19	90	5	60	69	0	0	30	0.89
20263469--20263502	15	2.2	16	89	5	52	50	5	0	44	1.26
20266155--20266229	38	2.0	38	89	0	114	37	20	16	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20273057--20273099	21	2.0	21	100	0	86	48	9	27	13	1.73
20275517--20275592	24	3.3	23	80	8	91	73	1	25	0	0.91
20275522--20275589	17	3.9	17	75	17	61	73	1	25	0	0.92
20275520--20275599	22	3.5	22	75	20	67	73	1	25	0	0.90
20281673--20281734	25	2.6	25	84	5	83	24	22	12	40	1.89
20283554--20283620	27	2.5	27	80	0	71	37	38	2	20	1.68
20290152--20290312	78	2.1	79	86	1	225	30	12	20	36	1.90
20293001--20293120	13	9.5	13	70	25	73	55	0	0	42	1.11
20293018--20293153	31	4.7	30	79	17	144	55	1	1	41	1.18
20293051--20293194	39	3.6	39	80	9	162	55	1	2	40	1.20
20293001--20293171	16	11.5	15	77	14	151	54	1	1	42	1.18
20293001--20293194	83	2.3	85	88	5	275	55	1	1	41	1.19
20293013--20293209	86	2.3	85	85	7	245	57	1	2	39	1.20
20293160--20293209	23	2.2	23	82	7	57	64	2	2	32	1.16
20293284--20293338	10	6.2	9	74	19	53	47	0	0	52	1.00
20293281--20293338	25	2.3	26	88	5	84	44	0	0	55	0.99
20296833--20296924	40	2.2	42	90	3	143	22	5	23	47	1.72
20297018--20297062	20	2.2	20	80	0	54	40	6	20	33	1.78
20299395--20299448	28	1.9	28	84	0	72	59	3	9	27	1.45
20300958--20301184	125	1.8	125	81	9	284	40	2	3	54	1.28
20301712--20301761	23	2.2	23	89	7	75	48	2	6	44	1.39
20304362--20304429	33	2.1	33	86	5	93	26	16	22	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20305092--20305144	21	2.5	21	84	0	61	16	28	15	39	1.89
20317532--20318127	297	2.0	297	99	0	1167	34	11	14	39	1.83
20324710--20325896	162	7.4	161	75	7	843	32	8	15	43	1.76
20324748--20325896	324	3.6	320	78	5	1021	32	8	15	44	1.76
20331548--20331611	30	2.1	30	83	11	78	35	25	17	21	1.95
20334199--20334292	13	6.4	14	67	22	50	56	0	0	43	0.99
20347084--20347133	26	1.9	26	84	8	66	6	16	0	78	0.95
20347531--20347611	41	2.0	41	82	7	101	41	17	9	30	1.82
20349746--20349784	17	2.4	17	86	4	53	61	7	2	28	1.37
20349781--20349837	15	3.9	14	80	19	55	77	1	0	21	0.86
20349781--20349837	9	5.9	9	75	20	53	77	1	0	21	0.86
20349776--20349837	19	3.3	18	75	20	56	77	1	0	20	0.85
20352061--20352159	38	2.7	37	81	7	105	39	19	9	32	1.83
20355085--20355114	13	2.3	13	94	0	51	90	0	10	0	0.47
20355082--20355117	18	2.0	18	88	0	54	88	0	11	0	0.50
20355649--20355710	25	2.8	21	76	21	63	75	0	12	11	1.04
20356099--20356128	13	2.4	12	89	10	51	90	0	10	0	0.47
20357660--20357836	41	4.4	39	74	8	149	41	14	9	35	1.77
20357816--20357914	41	2.4	39	78	18	96	38	17	8	36	1.79
20357732--20357914	81	2.2	80	79	7	199	38	16	8	37	1.78
20357934--20358044	42	2.7	42	78	4	127	36	18	11	34	1.87
20363127--20363171	21	2.2	20	84	11	56	37	0	2	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20363309--20363345	16	2.3	16	90	0	56	59	5	0	35	1.20
20373140--20373230	47	1.9	47	88	0	137	20	12	29	37	1.89
20375339--20375379	17	2.4	18	84	12	59	2	31	0	65	1.05
20375811--20375840	15	2.0	15	93	0	51	40	10	0	50	1.36
20376159--20376213	21	2.4	22	80	20	60	63	5	1	29	1.27
20376260--20376309	15	3.1	16	80	13	50	64	0	2	34	1.05
20380280--20380332	27	2.0	27	85	14	74	37	26	11	24	1.89
20389224--20389275	24	2.2	24	82	6	61	48	9	7	34	1.65
20389310--20389339	15	2.0	15	93	0	51	46	16	6	30	1.73
20392215--20392251	18	2.1	18	94	0	65	40	2	32	24	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130