Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  12  of  130  ( 15485 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3376880--3376949
29
2.4
30
76
7
72
17
4
7
71
1.25
3377684--3377729
3
15.3
3
90
0
74
28
0
2
69
1.00
3377803--3377944
71
2.1
67
81
13
161
50
3
9
36
1.51
3377865--3377897
15
2.3
15
89
5
50
63
3
0
33
1.10
3377894--3378159
57
4.7
57
76
11
199
48
5
10
34
1.61
3378228--3378260
16
2.1
16
88
5
50
9
6
0
84
0.76
3378702--3378744
24
1.9
21
86
13
59
44
2
6
46
1.43
3379251--3379301
24
2.1
24
85
7
68
56
5
1
35
1.35
3389188--3389222
16
2.2
16
90
10
54
62
0
2
34
1.10
3390670--3390722
22
2.4
22
93
6
90
50
0
0
49
1.00
3392314--3392368
21
2.7
21
91
2
85
29
18
0
52
1.45
3392583--3392634
21
2.4
22
81
18
65
63
15
1
19
1.40
3393145--3393217
20
3.5
21
79
7
87
53
0
19
27
1.45
3393145--3393223
40
2.0
40
89
2
122
53
0
18
27
1.45
3394002--3394053
27
1.9
27
88
0
77
34
1
0
63
1.06
3406655--3406711
21
2.8
20
79
12
53
52
0
3
43
1.18
3409950--3409990
16
2.6
16
85
11
50
60
0
2
36
1.10
3410420--3410465
15
3.1
14
84
6
56
32
0
2
65
1.05
3417301--3417409
56
1.9
56
86
0
155
36
9
17
36
1.82
3418260--3418311
18
2.8
18
75
13
52
53
1
3
40
1.30
3418348--3418389
18
2.3
19
88
8
61
54
0
0
45
0.99
3418369--3418459
28
3.2
28
78
10
89
49
1
1
48
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3418837--3418888
21
2.5
21
87
6
70
51
1
0
46
1.12
3418873--3418914
8
5.2
8
85
0
57
59
0
0
40
0.97
3418871--3418920
16
3.0
16
79
5
55
58
0
0
42
0.98
3418878--3418929
26
2.1
24
85
7
68
59
0
0
40
0.97
3419025--3419072
22
2.2
22
88
3
71
54
2
0
43
1.12
3419024--3419075
21
2.5
20
82
11
61
53
1
0
44
1.11
3418756--3419125
188
2.0
188
97
0
695
44
5
6
44
1.51
3419061--3419102
8
5.2
8
85
0
57
59
0
2
38
1.10
3419815--3419907
45
2.1
45
95
0
168
40
16
7
35
1.76
3420441--3420478
17
2.2
17
86
9
51
73
0
0
26
0.83
3422528--3422577
14
3.5
14
75
5
55
34
2
0
64
1.05
3422504--3422602
29
3.3
28
81
14
101
39
2
1
57
1.17
3422484--3422602
58
2.1
57
81
7
134
37
4
1
56
1.29
3425071--3425282
105
2.0
106
97
0
399
43
16
17
22
1.88
3444487--3444527
21
2.0
21
85
0
55
48
2
4
43
1.37
3444570--3444611
18
2.3
18
84
15
52
42
0
0
57
0.99
3456039--3456088
17
3.1
17
77
8
59
50
0
0
50
1.00
3457098--3457140
13
3.3
13
84
12
61
32
0
0
67
0.91
3457100--3457149
25
2.0
25
88
4
73
38
0
0
62
0.96
3457113--3457150
11
3.2
12
85
14
53
39
0
0
60
0.97
3458785--3458871
29
3.0
30
81
5
97
60
1
1
36
1.11
3459518--3459543
13
2.0
13
100
0
52
76
0
15
7
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3459956--3460004
17
2.7
19
78
9
66
59
0
2
38
1.09
3463232--3463261
15
1.9
16
93
6
53
63
0
6
30
1.20
3467335--3467360
3
8.7
3
100
0
52
0
0
30
69
0.89
3469293--3469331
17
2.4
16
87
8
53
12
5
2
79
1.00
3469679--3469901
53
4.3
51
71
13
159
41
13
11
33
1.80
3479058--3479237
90
2.0
90
95
0
324
27
16
17
39
1.90
3483521--3483559
20
2.0
20
85
10
53
56
0
0
43
0.99
3484570--3484609
2
20.0
2
100
0
80
50
0
50
0
1.00
3493143--3493302
82
2.0
81
87
3
232
39
16
15
28
1.89
3503887--3503923
15
2.4
16
86
13
51
40
16
5
37
1.71
3504652--3504798
79
1.9
79
86
2
215
36
15
19
29
1.92
3504790--3504830
2
20.5
2
100
0
82
51
0
0
48
1.00
3509054--3509127
28
2.6
29
78
8
89
58
4
1
36
1.26
3511276--3511330
13
4.3
12
77
18
58
63
5
0
30
1.17
3515928--3515961
5
6.6
5
90
6
50
79
2
0
17
0.86
3515995--3516049
27
2.0
28
85
3
76
50
5
5
38
1.48
3516011--3516067
21
2.8
19
77
12
51
54
5
1
38
1.33
3516174--3516210
17
2.1
19
85
10
51
70
0
0
29
0.88
3517420--3517528
42
2.6
42
77
2
112
44
11
12
30
1.79
3517675--3518047
65
5.7
65
74
8
215
46
10
18
24
1.80
3517899--3518068
65
2.6
65
79
4
184
51
12
15
20
1.75
3518294--3518361
31
2.3
30
82
7
77
44
16
14
25
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3518415--3518450
18
2.0
18
88
0
54
36
8
13
41
1.75
3519629--3519664
19
1.9
18
88
5
54
2
13
2
80
0.93
3522899--3522937
4
9.8
4
88
0
51
74
5
2
17
1.12
3523912--3523965
23
2.3
23
93
3
90
50
9
3
37
1.52
3524019--3524060
21
2.0
21
86
4
59
54
9
0
35
1.33
3532055--3532277
111
2.0
111
95
0
401
25
18
16
40
1.90
3533777--3533814
19
2.0
19
100
0
76
42
26
10
21
1.85
3538055--3538116
31
2.0
31
96
0
115
20
19
17
41
1.90
3543949--3544082
68
2.0
68
83
2
171
30
17
21
29
1.97
3550740--3550786
3
16.0
3
82
8
53
63
0
0
36
0.94
3551106--3551756
328
2.0
324
88
3
966
39
22
17
19
1.92
3552484--3552516
11
3.2
11
87
12
52
33
0
0
66
0.92
3552920--3552994
37
2.0
39
86
5
109
48
33
1
17
1.56
3552929--3553035
37
3.0
36
81
8
94
49
29
0
19
1.55
3553002--3553056
14
3.7
15
77
15
53
50
27
0
21
1.49
3553008--3553086
30
2.6
29
80
9
77
46
27
0
25
1.53
3569018--3569051
18
1.9
18
88
5
52
26
0
0
73
0.83
3577192--3577235
3
14.7
3
100
0
88
65
0
0
34
0.93
3578034--3578120
2
46.0
2
72
19
62
50
1
1
47
1.16
3578505--3578586
4
20.5
4
85
5
85
40
1
0
58
1.06
3578505--3578586
6
13.7
6
84
5
85
40
1
0
58
1.06
3578509--3578586
12
6.5
12
85
5
95
39
1
0
58
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3579377--3579454
30
2.6
30
79
2
93
35
15
2
46
1.60
3579377--3579463
30
2.9
30
72
17
81
37
14
2
44
1.58
3580159--3580763
301
2.0
301
98
0
1165
32
22
18
26
1.97
3582666--3582932
132
2.0
133
84
5
353
37
15
5
41
1.70
3590980--3591024
19
2.4
19
82
13
58
57
2
0
40
1.11
3597195--3597358
83
2.0
83
95
0
292
17
25
27
29
1.97
3603541--3603573
3
11.0
3
93
0
57
30
3
66
0
1.06
3606828--3606857
2
15.5
2
93
6
53
50
0
0
50
1.00
3617589--3617617
2
14.5
2
100
0
58
0
0
48
51
1.00
3623469--3623494
2
13.0
2
100
0
52
0
50
0
50
1.00
3625467--3625491
2
12.5
2
100
0
50
48
0
0
52
1.00
3625913--3625957
20
2.2
20
96
0
81
51
0
0
48
1.00
3625951--3625989
8
4.9
8
81
12
53
66
0
0
33
0.92
3625948--3626022
26
2.9
26
77
13
75
62
0
0
37
0.95
3627283--3627331
24
2.0
24
84
7
64
40
2
0
57
1.10
3628424--3628630
108
1.9
106
87
3
299
34
9
13
42
1.76
3628532--3628989
126
3.6
124
76
9
419
37
10
10
41
1.75
3628532--3628978
64
7.1
65
76
8
370
38
10
10
40
1.75
3628551--3628970
188
2.2
189
82
3
479
38
10
10
40
1.75
3629218--3629323
55
1.9
56
81
9
128
39
14
8
37
1.76
3629426--3629538
58
1.9
58
84
10
151
38
7
13
39
1.74
3629426--3629538
57
1.9
58
84
13
153
38
7
13
39
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3631590--3631628
16
2.4
16
86
4
51
43
2
17
35
1.63
3631789--3631823
2
17.5
2
100
0
70
48
0
0
51
1.00
3638479--3638548
30
2.3
30
80
7
79
28
4
1
65
1.20
3638468--3638547
6
13.3
6
73
15
51
28
3
1
66
1.17
3638557--3638613
14
3.8
15
75
22
57
19
15
0
64
1.28
3640736--3640786
25
2.0
26
85
11
70
62
5
0
31
1.19
3643006--3643077
23
3.2
23
66
2
56
38
5
4
51
1.45
3647443--3647468
2
13.0
2
100
0
52
50
0
0
50
1.00
3651629--3651655
2
13.5
2
100
0
54
48
0
51
0
1.00
3656601--3656641
21
2.0
22
85
9
59
65
12
0
21
1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130