genome.fa.s556.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  86  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16964019--16964183	43	3.8	43	77	0	141	31	16	10	41	1.82
16964712--16964754	19	2.2	20	87	4	61	67	0	6	25	1.15
16964719--16964748	15	2.0	15	93	0	51	70	0	6	23	1.11
16964811--16964847	20	1.9	18	89	10	56	48	0	5	45	1.25
16964971--16965011	21	1.9	22	85	5	57	70	7	4	17	1.28
16968215--16968317	52	2.0	51	86	5	145	27	13	9	49	1.73
16969320--16969416	48	2.0	48	97	0	185	31	12	10	45	1.75
16972230--16972314	32	2.7	32	77	0	98	32	20	25	21	1.97
16976926--16976971	18	2.6	17	80	10	56	36	2	8	52	1.45
16977032--16977076	20	2.2	21	88	4	65	51	0	4	44	1.21
16977213--16977246	15	2.2	16	89	5	52	44	0	2	52	1.16
16978429--16978479	24	2.1	24	82	7	59	50	0	7	41	1.31
16978501--16978525	7	3.6	7	100	0	50	84	0	0	16	0.63
16985774--16985803	16	1.9	15	93	6	51	50	3	0	46	1.18
16985900--16985949	16	3.4	16	69	25	56	54	8	14	24	1.66
16985892--16985952	27	2.3	27	91	2	106	52	9	13	24	1.70
16989378--16989414	11	3.3	11	85	7	56	81	0	10	8	0.89
16990947--16990991	23	1.9	24	81	4	56	35	13	13	37	1.84
16990772--16991106	45	7.4	45	66	9	171	34	5	15	44	1.71
16990848--16991101	135	1.9	134	86	6	361	33	5	14	45	1.70
16991215--16991262	17	2.8	18	84	12	57	31	20	16	31	1.95
16991473--16991520	17	2.9	17	78	3	53	29	12	22	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16991566--16991602	18	2.1	18	89	0	56	43	16	2	37	1.62
16993166--16993190	2	12.5	2	100	0	50	48	0	0	52	1.00
16993458--16993498	18	2.4	17	92	8	73	34	0	14	51	1.43
17003606--17003750	43	3.4	42	79	5	139	32	15	10	41	1.81
17004181--17004233	25	2.3	23	78	15	56	22	7	0	69	1.13
17004203--17004227	9	2.8	9	100	0	50	24	16	0	60	1.36
17004317--17004359	19	2.2	20	87	4	61	67	0	6	25	1.15
17004324--17004353	15	2.0	15	93	0	51	70	0	6	23	1.11
17008720--17008818	52	1.9	52	85	4	137	30	19	4	46	1.68
17009157--17009253	48	2.0	48	97	0	185	31	12	10	45	1.75
17012063--17012145	32	2.6	32	82	0	103	36	19	21	22	1.95
17016789--17016880	42	2.2	42	96	2	166	34	6	10	47	1.64
17016929--17016973	20	2.2	21	88	4	65	51	0	4	44	1.21
17018522--17018547	2	13.0	2	100	0	52	50	0	0	50	1.00
17025644--17025673	16	1.9	15	93	6	51	50	3	0	46	1.18
17025770--17025819	16	3.4	16	69	25	56	54	8	14	24	1.66
17025762--17025822	27	2.3	27	91	2	106	52	9	13	24	1.70
17031973--17031998	3	8.7	3	100	0	52	65	0	0	34	0.93
17032063--17032104	21	2.0	21	85	0	57	52	2	0	45	1.13
17033373--17033524	79	1.9	79	88	5	227	33	16	14	35	1.89
17034807--17034855	24	2.0	24	100	0	98	20	28	24	26	1.99
17036160--17036210	10	5.2	9	81	13	57	3	9	1	84	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17038318--17038349	16	2.0	16	93	0	55	31	21	0	46	1.52
17039966--17040037	32	2.2	32	82	7	83	19	9	13	56	1.64
17042990--17043027	14	2.7	15	88	8	53	44	5	2	47	1.39
17044642--17045809	162	7.2	160	77	8	920	33	8	13	43	1.75
17044494--17045809	323	4.1	324	82	4	1354	33	8	13	43	1.75
17045820--17045992	87	2.0	87	86	2	240	33	6	17	42	1.75
17048487--17048536	26	1.9	26	87	0	73	38	8	14	40	1.75
17049266--17049313	25	2.0	25	91	4	80	83	10	2	4	0.87
17049278--17049313	6	5.8	6	87	6	54	86	11	0	2	0.68
17049276--17049313	12	3.0	13	84	7	60	84	13	0	2	0.73
17049278--17049313	19	1.9	19	94	5	65	86	11	0	2	0.68
17050759--17050819	9	6.8	9	82	0	77	24	24	14	36	1.93
17050755--17050829	27	2.8	27	91	0	114	25	24	12	38	1.89
17051050--17051118	22	3.1	21	81	10	66	34	13	14	37	1.85
17051050--17051118	23	3.1	22	81	6	68	34	13	14	37	1.85
17051884--17051908	12	2.1	12	100	0	50	60	8	0	32	1.26
17053222--17053267	24	1.9	25	86	8	69	36	21	19	21	1.95
17054594--17054704	54	2.1	54	89	0	168	39	11	5	43	1.64
17055562--17055600	17	2.4	16	79	8	51	82	0	5	12	0.83
17055560--17055608	21	2.3	21	80	13	57	77	0	6	16	0.96
17056036--17056112	34	2.3	33	80	8	84	44	2	0	53	1.14
17057012--17057053	22	2.0	22	85	4	59	9	7	2	80	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17057028--17057052	13	1.9	13	100	0	50	8	12	0	80	0.92
17066074--17066155	30	2.9	27	78	18	78	35	3	1	59	1.23
17066184--17066301	30	4.0	29	76	13	107	55	1	3	39	1.27
17070393--17070438	18	2.6	18	85	0	65	65	2	10	21	1.35
17077546--17077629	17	4.6	17	72	13	60	46	2	0	51	1.14
17077565--17077601	19	1.9	19	88	0	56	43	0	0	56	0.99
17077609--17077654	13	3.3	14	82	14	51	63	0	0	36	0.95
17077630--17077674	8	5.4	8	84	10	63	64	2	0	33	1.06
17077654--17077736	32	2.7	32	71	3	80	53	2	3	40	1.32
17081045--17081082	16	2.3	16	90	4	58	36	10	5	47	1.61
17088302--17088337	13	2.8	13	86	0	54	52	0	0	47	1.00
17091205--17093397	877	2.5	879	82	4	2586	36	18	9	34	1.84
17093807--17093863	18	3.4	16	79	15	62	56	0	0	43	0.99
17093804--17093863	20	3.2	20	78	21	76	53	0	0	46	1.00
17093910--17093966	26	2.1	27	81	9	64	57	1	1	38	1.19
17095085--17095113	2	14.5	2	100	0	58	51	0	0	48	1.00
17098202--17098344	60	2.4	58	83	6	173	47	6	10	35	1.63
17098265--17098422	76	2.1	77	83	9	200	51	6	11	29	1.64
17098352--17098568	58	3.7	59	82	9	227	46	6	11	35	1.65
17098593--17098622	15	2.0	15	100	0	60	73	6	0	20	1.05
17099868--17099906	19	2.0	21	90	10	64	38	15	5	41	1.69
17100996--17101145	79	1.9	78	83	1	192	36	18	6	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17103944--17103977	18	1.9	18	94	5	61	41	26	0	32	1.56
17104317--17104409	39	2.4	40	92	3	154	12	1	63	22	1.35
17104645--17104682	20	2.0	20	89	5	60	34	0	5	60	1.19
17111672--17111700	3	9.7	3	100	0	58	65	0	0	34	0.93
17112068--17112125	30	1.9	30	86	6	82	37	10	3	48	1.54
17115481--17115523	23	1.9	23	90	4	70	48	0	2	48	1.14
17115874--17115959	12	7.5	12	73	17	58	45	3	0	51	1.18
17115873--17115965	46	2.0	46	93	0	159	46	4	0	49	1.21
17115943--17115990	16	3.1	16	77	17	55	50	6	2	41	1.39
17118199--17118232	12	2.8	12	86	0	50	52	11	2	32	1.53
17119718--17119753	18	2.0	18	89	10	56	58	2	0	38	1.13
17120888--17120952	3	23.0	3	78	12	75	33	1	0	64	1.03
17122978--17123043	29	2.2	30	83	2	80	16	3	7	72	1.20
17123006--17123048	16	2.7	15	73	13	50	20	0	4	74	1.00
17123050--17123407	46	7.6	46	75	11	253	41	13	9	34	1.77
17123402--17123609	99	2.1	99	81	0	238	44	17	6	31	1.74
17124087--17124141	9	5.8	9	73	26	51	7	10	3	78	1.08
17124664--17124714	4	12.2	4	80	12	50	1	21	0	76	0.88
17124664--17124701	16	2.3	17	90	4	60	0	21	0	78	0.74
17124664--17124714	13	4.0	13	82	12	61	1	21	0	76	0.88
17124774--17124820	17	2.9	17	84	6	62	10	4	6	78	1.06
17124778--17124835	18	3.3	17	81	11	64	10	3	5	81	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17125831--17125952	32	3.8	32	71	12	97	33	18	13	35	1.89
17128575--17128617	18	2.3	18	88	4	59	2	20	0	76	0.89
17129955--17129994	14	2.7	15	88	7	64	32	0	0	67	0.91
17137118--17137260	60	2.4	58	83	6	173	47	6	10	35	1.63
17137181--17137338	76	2.1	77	83	9	200	51	6	11	29	1.64
17137268--17137484	58	3.7	59	82	9	227	46	6	11	35	1.65
17137509--17137538	15	2.0	15	100	0	60	73	6	0	20	1.05
17138780--17138818	19	2.0	21	90	10	64	38	15	5	41	1.69
17139911--17140060	79	1.9	78	83	1	192	36	18	6	38	1.77
17143212--17143298	38	2.3	38	94	2	149	13	0	63	22	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130