genome.fa.s556.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  73  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15105720--15105752	17	1.9	17	100	0	66	36	12	3	48	1.56
15106503--15106535	16	2.1	16	94	0	57	57	0	0	42	0.98
15106916--15107135	58	3.7	59	77	14	211	40	6	4	48	1.50
15109259--15109386	60	2.1	62	81	7	145	39	14	15	29	1.88
15109765--15110014	64	4.0	62	73	9	168	40	10	15	34	1.81
15109730--15110035	127	2.4	126	79	13	299	39	11	15	33	1.83
15110133--15110204	35	2.1	35	84	5	92	31	11	20	36	1.88
15114039--15114161	64	1.9	66	83	5	162	43	11	13	31	1.79
15114039--15114183	64	2.3	62	79	5	148	44	13	11	31	1.79
15116667--15116732	33	2.0	33	84	0	87	30	12	6	51	1.63
15118805--15118842	13	2.8	14	84	4	51	23	7	5	63	1.42
15119972--15120767	161	4.9	159	78	6	730	32	9	15	42	1.80
15120028--15120767	321	2.3	321	83	5	863	31	9	16	42	1.80
15121920--15121963	22	2.0	23	95	4	81	56	0	0	43	0.99
15122118--15122225	33	3.2	33	84	7	146	33	12	11	42	1.79
15123028--15123082	28	2.0	28	96	0	101	36	14	14	34	1.87
15127858--15127983	64	2.0	65	83	9	161	48	11	19	19	1.80
15127896--15128021	64	2.0	64	80	9	141	46	13	21	19	1.84
15128222--15128462	85	2.8	86	82	1	261	33	12	21	33	1.90
15128345--15128398	17	3.1	17	78	7	56	25	9	24	40	1.85
15128216--15128462	86	2.9	85	82	2	262	33	11	21	34	1.89
15132012--15132070	16	3.5	17	73	17	61	79	0	5	15	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15137888--15137966	33	2.4	32	80	15	83	73	6	3	16	1.19
15140198--15140233	17	2.1	17	89	5	54	77	2	2	16	1.00
15140210--15140234	13	1.9	13	100	0	50	80	4	0	16	0.87
15140349--15140399	15	3.3	15	75	13	50	41	1	5	50	1.37
15140508--15140575	26	2.7	25	80	8	84	50	0	2	47	1.16
15140547--15140629	16	5.1	16	72	23	50	48	1	0	50	1.08
15140554--15140762	44	4.4	46	74	14	160	47	2	1	48	1.23
15140744--15140811	17	3.9	17	74	22	61	42	1	4	51	1.31
15140730--15140811	38	2.2	37	82	10	105	45	1	4	48	1.31
15140684--15140773	44	2.0	44	81	8	103	47	2	2	47	1.26
15140742--15140811	15	4.1	16	73	21	54	44	1	4	50	1.30
15140946--15141031	41	2.1	42	80	8	104	50	2	1	46	1.21
15141245--15141275	16	1.9	16	100	0	62	51	0	0	48	1.00
15144718--15144939	110	2.0	111	87	0	320	40	16	18	24	1.91
15150161--15150187	7	3.9	7	100	0	54	85	0	0	14	0.61
15150832--15151569	245	3.1	233	75	11	826	51	5	10	33	1.58
15153919--15153945	14	1.9	14	100	0	54	44	0	14	40	1.46
15154992--15155032	20	2.0	21	85	4	57	26	0	12	60	1.31
15158442--15158494	20	2.6	21	81	3	63	28	26	28	16	1.97
15160099--15162070	234	8.5	235	75	9	1268	52	6	10	31	1.60
15160896--15162043	471	2.4	468	80	6	1162	52	7	9	30	1.61
15166026--15166162	33	4.2	33	75	1	114	35	2	36	24	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15170827--15171018	94	2.0	94	86	2	269	40	18	17	23	1.91
15172271--15172670	143	2.8	142	83	5	466	40	12	14	34	1.82
15173258--15173353	37	2.6	37	84	1	129	34	12	18	34	1.89
15173453--15173500	22	2.2	22	84	0	60	4	4	14	77	1.08
15173859--15174059	85	2.4	85	83	9	266	31	11	21	35	1.89
15174514--15174574	28	2.2	28	84	0	77	40	9	19	29	1.84
15174695--15174759	33	2.0	33	81	6	78	32	18	20	29	1.96
15174656--15174949	136	2.2	136	78	9	314	31	13	17	37	1.89
15174611--15174947	103	3.3	103	76	7	260	32	13	18	35	1.90
15175174--15175311	68	2.1	66	79	8	145	30	12	21	36	1.90
15175232--15175311	32	2.4	33	77	6	90	30	11	23	35	1.90
15175478--15175523	22	2.1	22	88	8	67	28	17	17	36	1.92
15175490--15175538	22	2.2	22	85	0	62	24	14	22	38	1.91
15181198--15181224	3	9.0	3	100	0	54	33	0	0	66	0.92
15181400--15181433	17	1.9	18	88	5	52	20	8	14	55	1.65
15185157--15185347	95	2.0	95	82	4	233	41	17	16	24	1.89
15186573--15186991	143	2.9	141	83	8	526	40	12	13	33	1.82
15193126--15193166	19	2.2	19	90	0	64	43	4	0	51	1.23
15193129--15193183	10	5.6	10	80	4	58	47	7	0	45	1.30
15193121--15193182	29	2.1	30	85	8	83	45	6	0	48	1.28
15193140--15193225	40	2.1	40	82	6	102	52	4	0	43	1.22
15193140--15193233	41	2.3	41	81	7	111	52	4	0	43	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15193325--15193453	10	12.4	10	70	14	64	59	4	3	32	1.33
15193356--15193492	10	13.3	10	70	11	71	54	3	2	39	1.30
15193324--15193384	31	2.0	31	83	6	79	62	4	3	29	1.32
15193432--15193471	18	2.2	18	86	0	53	57	0	0	42	0.98
15193429--15193487	21	3.1	19	76	18	59	54	0	0	45	0.99
15193602--15193651	16	3.1	16	82	5	66	60	2	2	36	1.20
15193742--15194161	10	43.4	9	66	15	55	36	0	7	55	1.34
15193752--15194152	9	42.6	9	65	18	56	36	0	7	54	1.35
15193720--15193775	20	2.9	19	71	10	51	28	1	8	60	1.37
15193750--15193786	11	3.5	11	88	3	58	32	0	8	59	1.27
15193744--15193830	39	2.2	39	81	6	95	34	2	4	58	1.31
15193842--15193899	19	3.1	19	82	2	55	36	1	8	53	1.42
15193867--15193994	19	6.9	19	78	10	104	36	0	7	56	1.27
15193915--15193997	37	2.2	38	89	6	125	40	0	6	53	1.26
15193992--15194036	23	2.0	22	86	8	63	28	0	6	64	1.19
15194064--15194161	29	3.4	27	77	12	88	33	1	8	57	1.35
15194064--15194152	19	4.7	19	66	18	51	33	1	8	56	1.38
15194110--15194161	9	5.4	9	80	13	50	30	1	3	63	1.23
15194099--15194176	20	3.8	20	73	13	61	32	2	6	58	1.37
15194624--15194761	9	14.8	9	67	14	66	66	5	3	24	1.28
15194624--15194696	30	2.5	29	84	8	87	69	5	2	21	1.21
15194678--15194712	17	2.0	18	88	5	54	71	0	2	25	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15195106--15195197	10	9.8	9	73	12	69	59	8	0	31	1.28
15195105--15195184	19	4.3	19	82	9	94	58	11	0	30	1.33
15195106--15195184	9	8.6	9	70	13	54	59	10	0	30	1.30
15195296--15195387	27	3.4	27	71	10	64	25	1	11	61	1.37
15200191--15200225	12	2.9	12	91	0	52	20	22	0	57	1.41
15208857--15209130	139	2.0	141	84	8	364	32	12	14	40	1.82
15216189--15216318	20	6.5	19	77	13	118	42	42	2	13	1.56
15216189--15216318	40	3.3	38	79	8	143	42	42	2	13	1.56
15220190--15220280	13	7.0	14	68	17	54	46	36	2	15	1.58
15220193--15220359	20	8.5	20	74	10	107	45	33	1	19	1.61
15220251--15220359	40	2.7	39	81	5	119	44	31	1	22	1.63
15227362--15227453	16	5.5	16	67	12	51	69	3	19	7	1.27
15229856--15230152	31	9.7	29	71	11	87	37	17	15	29	1.91
15230037--15230113	31	2.5	31	84	0	100	37	10	14	37	1.80
15230088--15230148	31	2.0	31	90	0	95	42	19	8	29	1.80
15230191--15230280	30	3.0	30	77	9	85	38	18	16	25	1.92
15230304--15230526	122	1.8	122	82	3	288	38	14	16	30	1.89
15230304--15230573	122	2.2	122	79	5	287	37	14	17	31	1.89
15232911--15233227	20	16.5	20	71	16	176	43	35	2	17	1.64
15232910--15233020	53	2.1	54	84	5	145	43	34	2	19	1.66
15233115--15233202	14	5.9	14	70	27	58	43	40	2	13	1.57
15233275--15233322	25	1.9	25	83	8	62	45	35	0	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15233467--15233525	25	2.4	25	86	8	77	45	38	0	15	1.46
15233514--15233565	19	2.8	19	82	2	61	48	34	1	15	1.56
15233477--15233559	31	2.6	31	80	12	89	48	37	1	13	1.50
15233575--15233621	18	2.6	17	83	12	58	46	38	0	14	1.45
15233608--15233656	18	2.6	19	87	6	73	36	32	6	24	1.80
15233646--15233671	12	2.2	12	100	0	52	46	38	0	15	1.46
15236119--15236160	19	2.2	19	86	4	57	28	0	2	69	1.01
15236207--15236278	5	14.4	5	72	21	53	62	1	1	34	1.13
15236195--15236260	23	2.7	24	83	9	80	63	1	0	34	1.04
15238272--15238317	21	2.2	21	84	0	56	56	0	4	39	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130