genome.fa.s556.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  74  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15239537--15239567	14	2.2	14	94	0	53	19	3	3	74	1.10
15240300--15240394	11	8.3	11	68	20	52	22	7	13	56	1.61
15240329--15240394	12	5.4	12	72	21	57	24	7	13	54	1.65
15241013--15241066	25	2.1	26	86	3	74	12	1	16	68	1.29
15243670--15243696	14	1.9	14	100	0	54	81	3	0	14	0.82
15243975--15244019	21	2.1	22	84	12	58	42	4	15	37	1.67
15245672--15245729	19	3.1	19	89	0	80	15	6	34	43	1.74
15245753--15245839	13	7.2	13	70	17	62	19	9	14	56	1.65
15245777--15245819	20	2.2	19	87	4	59	13	6	18	60	1.55
15245802--15245840	13	2.9	14	92	7	64	20	7	12	58	1.58
15246131--15246260	62	2.1	63	82	7	158	30	13	16	39	1.87
15246677--15246826	60	2.5	60	82	6	160	34	14	10	40	1.80
15246814--15247015	62	3.2	62	79	12	223	36	12	13	37	1.83
15249525--15249564	19	2.1	19	85	4	53	35	2	0	62	1.09
15250349--15250384	17	2.0	19	89	10	58	19	5	2	72	1.17
15250397--15250434	16	2.4	16	86	8	51	52	5	10	31	1.58
15252119--15252152	12	2.7	13	90	4	52	14	11	23	50	1.76
15252744--15252821	35	2.2	35	84	4	95	50	12	19	17	1.78
15252915--15252987	36	2.1	36	87	7	105	52	16	16	15	1.76
15252915--15253146	35	6.6	35	69	10	107	53	16	15	14	1.74
15252921--15253106	69	2.7	70	79	8	198	52	16	15	15	1.75
15253070--15253143	37	2.0	37	84	5	96	54	20	16	9	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15255107--15255148	18	2.6	16	81	11	50	61	14	4	19	1.49
15261297--15261330	11	3.2	11	83	8	52	82	2	0	14	0.79
15261783--15262072	44	6.5	44	72	12	200	41	9	15	34	1.79
15262002--15262072	23	3.1	22	71	18	65	43	7	14	35	1.72
15261779--15262072	22	13.3	22	66	19	89	41	9	15	33	1.79
15265099--15265168	33	2.1	33	84	10	90	52	12	17	17	1.74
15266948--15266979	15	2.1	15	94	0	55	90	0	6	3	0.53
15266949--15267017	17	4.2	16	75	12	61	81	2	13	2	0.92
15271264--15271312	15	3.1	16	72	21	50	10	16	0	73	1.09
15272739--15272772	17	2.0	17	88	0	50	38	2	35	23	1.70
15276412--15276492	41	2.0	41	85	0	108	48	12	12	27	1.76
15282887--15283048	12	13.1	12	75	8	119	42	27	9	20	1.82
15282881--15283028	25	5.9	25	86	0	179	43	29	8	18	1.80
15283550--15283679	62	2.1	61	81	8	147	43	11	13	32	1.79
15283643--15284037	124	3.2	125	82	4	440	40	12	12	34	1.80
15283892--15284795	186	4.9	184	82	3	1053	40	11	13	34	1.81
15283892--15284795	372	2.4	371	85	3	1223	40	11	13	34	1.81
15293313--15293344	12	2.4	14	90	10	50	81	6	3	9	0.97
15298760--15298802	21	2.0	22	86	4	61	25	4	0	69	1.07
15298769--15298802	7	4.9	7	96	0	59	23	0	0	76	0.79
15298824--15298857	5	6.8	5	87	12	52	79	2	0	17	0.86
15299629--15299655	2	13.5	2	100	0	54	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15301581--15301620	13	3.0	13	85	3	53	60	2	0	37	1.11
15301805--15301855	18	2.7	18	78	6	57	54	3	0	41	1.19
15305450--15305480	2	15.5	2	100	0	62	51	48	0	0	1.00
15309426--15309594	88	1.9	88	93	0	293	44	18	11	25	1.84
15311184--15311221	13	2.8	14	81	18	53	50	5	2	42	1.39
15311842--15311940	47	2.1	47	98	1	191	32	16	27	24	1.96
15315290--15315335	14	3.3	14	85	11	67	84	0	13	2	0.71
15315302--15315335	13	2.7	12	90	9	50	88	0	11	0	0.52
15322613--15322663	3	17.0	3	100	0	102	33	0	0	66	0.92
15328046--15328083	19	2.0	19	85	10	51	39	0	0	60	0.97
15328260--15328286	3	9.0	3	100	0	54	66	0	0	33	0.92
15328998--15329062	33	2.0	32	90	3	103	29	16	26	27	1.97
15332763--15332787	2	12.5	2	100	0	50	52	0	0	48	1.00
15341881--15341918	18	2.0	20	85	10	53	23	18	0	57	1.40
15342395--15342419	13	1.9	13	100	0	50	80	0	20	0	0.72
15344262--15344304	22	1.9	23	86	13	63	2	18	4	74	1.10
15350562--15350601	18	2.2	19	86	4	55	55	5	12	27	1.58
15353368--15353407	3	13.3	3	100	0	80	67	0	0	32	0.91
15357917--15357953	7	5.6	7	84	9	51	2	8	0	89	0.58
15358289--15358694	143	2.8	143	81	6	430	42	11	11	34	1.77
15359115--15359158	9	4.9	9	81	10	54	11	4	9	75	1.19
15359822--15359915	47	2.0	47	81	8	109	35	40	8	15	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15360724--15361258	235	2.3	235	83	4	648	32	9	11	47	1.71
15361302--15362016	203	3.5	203	75	6	559	35	12	10	41	1.77
15363465--15363493	6	4.8	6	100	0	58	68	0	0	31	0.89
15364674--15364731	20	3.0	19	82	5	73	37	8	6	46	1.61
15364754--15364856	20	5.1	20	80	1	98	33	4	7	54	1.50
15364889--15365183	53	5.6	53	88	1	412	29	4	9	56	1.50
15365073--15365114	21	2.0	22	90	4	68	30	4	7	57	1.47
15365072--15365192	20	6.3	20	70	22	66	31	4	9	54	1.53
15365093--15365162	33	2.2	32	84	7	97	30	5	12	51	1.63
15365260--15365315	24	2.3	23	80	17	69	32	3	12	51	1.56
15365395--15365439	20	2.4	18	85	7	54	28	4	13	53	1.59
15365440--15365493	18	3.1	16	75	15	54	33	5	12	48	1.65
15366744--15366781	19	2.0	20	89	5	60	55	0	10	34	1.34
15366744--15366781	18	2.0	20	85	10	53	55	0	10	34	1.34
15366957--15367030	39	1.9	37	83	5	94	41	20	6	31	1.78
15373499--15373660	87	1.9	85	83	6	209	39	12	13	33	1.83
15374106--15374166	32	1.9	32	93	0	104	31	22	19	26	1.98
15374150--15374244	32	3.0	32	81	3	102	40	30	11	17	1.86
15374161--15374212	15	3.3	15	71	10	50	50	28	3	17	1.64
15374276--15374356	32	2.5	32	82	6	101	40	25	13	19	1.89
15374638--15374701	22	3.0	21	75	6	56	39	17	12	31	1.87
15378353--15378407	7	8.7	6	80	20	51	78	0	16	5	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15378359--15378406	22	2.2	21	85	10	62	79	0	14	6	0.92
15378371--15378413	21	2.0	22	86	4	61	72	0	23	4	1.04
15381960--15381999	14	2.8	14	88	3	62	22	10	0	67	1.20
15381961--15382035	29	2.6	27	76	14	69	24	9	1	65	1.30
15387876--15388202	11	29.4	11	66	17	65	45	1	3	49	1.28
15387869--15388149	21	13.6	21	79	7	274	47	1	3	47	1.27
15387864--15388117	120	2.1	122	81	7	304	49	1	3	46	1.25
15387869--15388096	100	2.2	100	84	6	282	48	1	3	46	1.27
15387869--15388147	62	4.5	62	75	11	216	48	1	3	46	1.27
15387907--15388211	22	14.5	22	75	12	112	44	0	3	50	1.27
15388119--15388216	33	3.0	33	83	5	119	37	1	5	56	1.28
15388108--15388211	11	9.5	11	75	4	93	37	0	4	56	1.27
15388385--15388430	19	2.4	19	85	0	65	36	2	0	60	1.09
15388426--15388513	11	8.7	10	70	16	56	35	4	4	55	1.41
15388459--15388513	21	2.6	21	74	11	58	36	3	5	54	1.41
15388697--15388774	29	2.6	29	73	18	72	48	0	1	50	1.09
15388722--15388788	18	3.7	18	73	11	55	50	0	0	49	1.00
15388729--15388757	11	2.7	11	94	5	51	51	0	0	48	1.00
15388601--15388774	59	2.9	60	78	6	167	42	1	2	53	1.23
15389502--15389532	2	15.5	2	100	0	62	48	0	0	51	1.00
15391384--15391436	27	2.0	27	92	0	88	52	0	13	33	1.40
15392037--15392076	18	2.2	17	86	8	53	12	12	0	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15396674--15396709	2	18.0	2	94	0	63	50	0	2	47	1.15
15396714--15396775	31	2.0	31	96	0	115	14	9	37	38	1.79
15397067--15397095	14	2.1	14	100	0	58	79	0	0	20	0.74
15399282--15399324	12	3.4	12	83	6	50	55	2	0	41	1.12
15401905--15401937	3	11.0	3	100	0	66	33	33	0	33	1.58
15403416--15403836	228	1.8	228	85	3	587	45	3	7	43	1.48
15404453--15404495	20	2.3	19	81	14	54	51	16	4	27	1.64
15404487--15404555	23	2.9	24	77	14	63	60	13	5	20	1.52
15404639--15404707	18	3.7	18	68	21	61	53	13	5	27	1.62
15404806--15404888	8	10.4	8	83	8	107	81	2	2	13	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130