genome.fa.s556.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  10  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2829719--2829761	21	2.0	21	86	8	61	46	4	0	48	1.22
2829718--2829760	14	2.9	14	89	6	59	46	4	0	48	1.22
2829902--2829938	18	2.1	17	90	5	56	37	0	13	48	1.43
2830058--2830095	16	2.4	16	86	4	51	23	10	0	65	1.23
2836591--2836622	12	2.7	12	90	0	55	21	18	40	18	1.91
2836561--2836637	24	3.2	24	72	5	75	12	23	38	24	1.90
2837873--2837926	24	2.2	23	81	18	65	25	3	3	66	1.25
2838469--2838541	31	2.4	31	86	4	103	21	24	24	28	1.99
2838604--2838647	19	2.3	19	80	0	52	22	25	22	29	1.99
2838980--2839439	156	2.9	160	92	2	750	28	13	17	40	1.88
2843064--2843114	8	6.4	8	84	13	52	84	0	11	3	0.75
2843064--2843106	11	4.0	11	84	6	61	86	0	11	2	0.67
2843064--2843106	21	2.0	21	90	0	68	86	0	11	2	0.67
2843064--2843106	10	4.1	10	88	8	59	86	0	11	2	0.67
2843156--2843190	1	35.0	1	88	0	52	94	5	0	0	0.32
2844346--2844999	41	15.9	41	92	5	1024	22	17	22	37	1.94
2845008--2845081	23	3.3	22	87	7	105	86	9	0	4	0.69
2845011--2845088	32	2.5	30	84	10	95	85	8	0	5	0.72
2845009--2845094	23	3.9	21	81	14	84	84	8	0	6	0.76
2845009--2845081	1	73.0	1	76	0	65	87	8	0	4	0.65
2845844--2845915	30	2.4	29	81	11	83	22	23	25	29	1.99
2845976--2846015	19	2.0	20	90	4	64	27	25	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2846303--2846332	11	2.7	11	100	0	60	13	0	6	80	0.91
2846355--2846800	162	2.8	160	92	5	730	27	14	18	39	1.89
2851101--2851201	20	4.9	19	70	15	69	51	1	0	46	1.12
2851095--2851203	25	4.5	26	74	21	87	51	1	0	46	1.11
2851073--2851175	50	2.0	51	88	5	156	52	2	0	44	1.16
2851113--2851200	22	4.1	22	69	15	69	52	2	0	45	1.13
2851098--2851203	19	5.2	20	70	24	71	51	1	0	46	1.11
2851298--2851365	26	2.6	27	82	13	81	50	1	1	47	1.19
2853244--2853273	1	30.0	1	93	0	51	96	3	0	0	0.21
2853292--2853327	15	2.4	15	90	9	56	0	27	47	25	1.52
2853539--2853582	19	2.3	19	84	0	52	27	22	27	22	1.99
2853644--2853713	31	2.3	31	87	5	97	30	24	22	22	1.99
2854030--2854061	11	2.8	12	86	13	50	81	0	0	18	0.70
2854290--2854326	12	3.2	12	85	7	51	89	0	0	10	0.49
2854293--2854325	6	5.8	6	86	13	52	87	0	0	12	0.53
2854360--2854436	20	3.8	20	89	1	100	20	31	31	16	1.95
2854546--2854589	21	2.1	21	87	8	63	52	0	2	45	1.13
2860665--2860726	29	2.1	29	84	0	79	20	4	53	20	1.64
2860804--2860858	7	8.4	7	80	13	64	9	0	16	74	1.06
2860824--2860858	18	1.9	18	100	0	70	11	0	11	77	1.00
2861066--2861918	96	8.8	96	81	5	817	37	20	12	29	1.89
2861121--2861918	240	3.3	239	82	4	908	37	20	12	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2861066--2861918	144	5.9	147	79	8	797	37	20	12	29	1.89
2867594--2867641	24	2.0	24	95	0	87	20	31	20	27	1.98
2874113--2874168	16	3.4	16	74	11	51	28	0	3	67	1.07
2875310--2875343	17	2.0	17	88	0	50	0	5	11	82	0.83
2875339--2875370	7	4.4	7	96	4	55	12	0	15	71	1.14
2878421--2878461	21	2.0	20	85	9	55	63	12	0	24	1.28
2882498--2882556	27	2.3	24	80	8	64	47	1	1	49	1.21
2882524--2882572	27	1.9	26	84	12	66	44	2	0	53	1.12
2886116--2886156	14	2.9	15	82	10	50	19	0	4	75	0.98
2886125--2886181	17	3.1	18	78	9	62	21	0	7	71	1.08
2886559--2886636	16	4.9	16	82	4	95	48	32	2	16	1.60
2886559--2886646	31	2.8	32	80	5	106	46	32	3	17	1.64
2886677--2886805	30	4.4	29	73	12	88	48	32	0	19	1.49
2886674--2886804	29	4.5	29	71	9	88	47	32	0	19	1.50
2886674--2886805	58	2.3	56	78	12	133	46	32	0	20	1.51
2890373--2890499	68	1.9	68	84	0	173	34	5	15	44	1.70
2890505--2890532	2	14.0	2	100	0	56	50	0	0	50	1.00
2891486--2891589	47	2.2	48	82	1	138	47	7	14	30	1.72
2891965--2892023	24	2.5	24	88	2	84	22	8	22	47	1.77
2891965--2892031	24	2.8	24	84	6	66	25	8	20	44	1.80
2894951--2894978	2	14.0	2	100	0	56	50	0	0	50	1.00
2902115--2902158	12	3.5	12	79	11	52	22	0	20	56	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2902153--2902212	28	2.1	28	84	0	75	28	3	15	53	1.57
2902327--2902363	14	2.6	15	83	8	51	32	0	0	67	0.91
2902480--2902527	22	2.3	21	86	10	64	27	6	0	66	1.15
2904174--2904254	40	2.0	40	80	4	92	9	19	7	62	1.49
2904358--2904402	8	5.5	8	86	5	54	42	0	2	55	1.12
2904358--2904399	17	2.7	15	85	10	57	42	0	2	54	1.13
2904351--2904399	25	2.0	24	84	7	64	38	2	2	57	1.22
2904358--2904402	16	2.7	17	86	3	65	42	0	2	55	1.12
2904356--2904413	25	2.3	24	80	13	64	39	0	1	58	1.08
2907796--2907820	2	12.5	2	100	0	50	52	0	0	48	1.00
2910747--2910821	24	3.1	24	85	11	91	48	0	1	50	1.09
2910752--2910805	20	2.6	21	82	5	65	48	0	0	51	1.00
2910752--2910841	24	3.7	25	81	10	89	51	0	0	48	1.00
2910865--2910938	31	2.6	29	77	12	82	40	2	5	51	1.39
2912546--2912602	22	2.5	23	78	16	64	57	0	7	35	1.26
2912785--2912828	20	2.1	21	87	4	63	27	2	0	70	0.99
2916756--2916831	10	6.8	11	72	19	59	43	0	2	53	1.14
2916755--2916831	35	2.3	33	82	6	93	44	0	2	53	1.14
2916755--2916831	11	6.9	11	73	14	59	44	0	2	53	1.14
2920531--2920870	171	2.0	171	94	0	590	30	19	22	27	1.98
2925806--2925844	19	2.1	19	90	0	60	28	20	28	23	1.99
2931877--2931903	4	6.8	4	100	0	54	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2934726--2934768	20	2.2	19	87	4	59	34	0	2	62	1.08
2935662--2935697	2	18.5	2	91	5	56	55	0	44	0	0.99
2935659--2935693	17	2.1	17	100	0	70	60	0	40	0	0.97
2945886--2945911	3	8.7	3	100	0	52	30	0	0	69	0.89
2978513--2978592	36	2.2	36	82	12	94	46	6	10	37	1.63
2979526--2979572	22	2.1	23	84	11	62	42	8	0	48	1.33
2985274--2985310	19	1.9	20	88	5	58	56	0	5	37	1.22
2986975--2987038	29	2.2	29	83	8	85	53	0	0	46	1.00
2986978--2987050	20	3.8	20	74	18	59	50	0	0	49	1.00
2986975--2987046	29	2.5	30	77	11	78	51	0	0	48	1.00
2987041--2987080	13	2.9	15	75	17	50	40	0	0	60	0.97
2987033--2987074	18	2.3	19	80	8	52	42	0	0	57	0.99
2987135--2987208	29	2.5	30	84	4	96	44	0	1	54	1.08
2993809--2993839	15	2.1	15	93	0	53	25	12	16	45	1.83
3002599--3002638	19	2.1	19	85	0	53	57	5	0	37	1.21
3009005--3009076	36	2.0	36	100	0	144	19	16	30	33	1.94
3016735--3016760	13	2.0	13	100	0	52	23	15	7	53	1.67
3023364--3023423	31	2.0	30	86	3	84	35	18	18	28	1.94
3027303--3027359	24	2.5	23	78	15	57	42	0	0	57	0.98
3028271--3028304	17	2.0	17	88	11	52	50	0	2	47	1.16
3030747--3030795	14	2.9	17	74	22	50	38	0	0	61	0.96
3030756--3030789	14	2.5	13	90	9	59	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3031896--3031957	31	2.0	31	100	0	124	29	6	16	48	1.70
3032857--3032887	2	15.5	2	100	0	62	51	0	0	48	1.00
3036056--3036106	18	2.7	21	74	22	58	52	0	0	47	1.00
3036058--3036105	19	2.6	17	80	9	51	54	0	0	45	0.99
3036515--3036576	33	1.9	32	86	3	88	43	0	3	53	1.17
3044900--3044948	24	2.0	24	100	0	98	40	14	24	20	1.89
3049174--3049315	76	1.9	76	84	0	194	40	10	16	32	1.82
3057309--3057337	2	14.5	2	100	0	58	51	0	0	48	1.00
3060980--3061011	2	16.0	2	100	0	64	50	0	0	50	1.00
3064537--3064749	113	1.9	113	90	1	338	40	33	5	20	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130