genome.fa.s556.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  58  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12413560--12413628	29	2.4	28	83	7	84	72	0	5	21	1.05
12414562--12414601	11	3.5	12	75	25	50	62	5	5	27	1.37
12414692--12414804	6	18.5	6	73	14	81	76	2	2	18	1.03
12414688--12414776	41	2.2	39	77	18	92	75	2	2	20	1.02
12417761--12417791	16	1.9	16	93	0	53	19	3	0	77	0.90
12421851--12421994	72	2.0	75	83	4	186	50	4	8	36	1.54
12421925--12422103	61	3.0	60	81	10	206	46	6	12	34	1.69
12426175--12426287	31	3.7	30	76	4	93	45	24	5	24	1.74
12432091--12432126	3	12.7	3	88	11	58	63	0	0	36	0.94
12432094--12432131	11	3.5	11	82	13	51	60	0	0	39	0.97
12432091--12432124	8	4.1	8	96	3	59	64	0	0	35	0.94
12432346--12432395	12	4.0	13	78	17	52	48	24	12	16	1.79
12432842--12432874	12	2.8	12	95	0	57	39	3	9	48	1.50
12438214--12438285	35	2.1	35	100	0	144	37	11	22	29	1.88
12438301--12438329	6	5.0	6	91	8	51	86	0	13	0	0.58
12438298--12438339	17	2.4	18	92	4	68	85	2	9	2	0.77
12438301--12438329	11	2.5	12	88	11	51	86	0	13	0	0.58
12438833--12438892	4	14.5	4	80	13	68	78	0	20	1	0.84
12438833--12438892	28	2.1	28	87	12	86	78	0	20	1	0.84
12439749--12439896	67	2.2	68	81	11	175	39	15	14	30	1.87
12439918--12440040	22	5.8	21	75	12	90	30	23	17	27	1.97
12440203--12440280	32	2.4	32	87	6	122	41	16	11	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12440583--12440637	23	2.4	23	90	3	85	36	21	20	21	1.95
12441111--12441148	19	2.0	19	90	10	60	71	0	0	28	0.87
12441104--12441153	24	2.0	24	88	3	73	72	0	0	28	0.86
12443174--12443220	3	15.7	3	90	0	76	61	4	0	34	1.15
12443449--12443500	24	2.2	24	96	0	95	57	26	7	7	1.54
12443449--12443500	12	4.3	12	80	7	61	57	26	7	7	1.54
12443556--12443604	19	2.6	19	87	6	64	53	26	4	16	1.61
12443580--12443640	32	1.9	31	90	3	95	47	21	6	24	1.74
12445525--12445660	4	35.8	4	70	15	51	30	2	0	65	1.13
12445519--12445659	10	13.6	10	71	21	78	30	2	0	65	1.11
12445520--12445634	3	36.0	3	74	19	58	30	2	0	66	1.11
12445539--12445621	24	3.5	24	86	6	107	31	2	0	66	1.05
12445523--12445594	38	1.9	37	86	8	101	29	1	0	69	0.97
12445525--12445646	31	4.1	29	77	19	110	31	2	0	64	1.12
12445527--12445655	55	2.4	53	82	8	145	31	3	0	64	1.14
12445924--12445950	10	2.7	10	100	0	54	29	0	7	62	1.22
12446467--12446528	25	2.5	25	78	7	72	20	1	0	77	0.85
12446475--12446528	14	3.6	16	74	18	53	20	1	0	77	0.86
12446473--12446524	6	8.8	6	77	12	54	19	1	0	78	0.84
12446540--12446723	61	3.0	61	86	4	262	50	6	9	34	1.60
12461583--12461609	2	13.5	2	100	0	54	51	0	0	48	1.00
12461968--12462013	20	2.3	20	100	0	92	15	19	32	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12462005--12462060	19	3.0	19	81	2	69	17	8	26	46	1.78
12462064--12462123	25	2.5	24	81	8	68	16	11	23	48	1.79
12462064--12462130	12	5.5	12	68	21	50	16	11	23	47	1.80
12462354--12462385	3	10.7	3	100	0	64	34	0	0	65	0.93
12463208--12463257	16	2.9	18	72	24	54	52	8	10	30	1.64
12468204--12468311	31	3.5	30	76	2	90	24	4	26	44	1.73
12472381--12472545	61	2.7	61	80	10	176	32	13	6	47	1.69
12472490--12472628	72	1.9	73	85	4	192	36	10	5	48	1.59
12479219--12479260	3	14.0	3	89	0	66	61	0	2	35	1.09
12480351--12480381	14	2.2	14	94	0	53	90	3	6	0	0.55
12482220--12482254	15	2.2	16	90	5	54	20	28	0	51	1.47
12486469--12486503	16	2.2	16	89	0	52	20	2	22	54	1.58
12486474--12486536	16	3.9	15	74	12	54	19	3	31	46	1.65
12486479--12486547	33	2.1	33	86	5	95	15	1	31	50	1.53
12487899--12487940	21	2.0	21	90	9	68	4	4	57	33	1.41
12489299--12489333	15	2.2	16	95	5	63	17	20	0	62	1.32
12492888--12493150	125	2.1	125	90	0	409	34	12	12	39	1.82
12492888--12493201	125	2.5	125	85	2	362	35	12	12	39	1.81
12493098--12493898	185	4.3	186	79	4	837	38	12	10	38	1.78
12493098--12493898	187	4.3	186	79	4	803	38	12	10	38	1.78
12494586--12494613	12	2.3	12	100	0	56	21	17	17	42	1.89
12496472--12496524	11	4.3	13	77	18	51	18	0	1	79	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12496484--12496526	10	4.4	9	82	11	50	18	0	0	81	0.69
12496472--12496524	18	2.9	18	79	17	65	18	0	1	79	0.83
12496472--12496525	19	2.9	19	74	20	60	18	0	1	79	0.82
12496633--12496806	25	7.2	25	70	23	90	25	4	3	66	1.26
12496647--12496792	21	6.4	21	69	21	82	24	4	2	67	1.23
12496708--12496793	43	2.0	44	86	11	124	22	4	1	72	1.10
12497670--12497724	3	19.0	3	78	17	55	27	0	0	72	0.85
12497670--12497724	13	4.0	14	77	20	62	27	0	0	72	0.85
12497662--12497805	27	5.5	27	68	16	81	22	3	2	71	1.14
12497747--12497799	4	12.5	4	86	13	63	20	3	0	75	0.96
12497747--12497794	15	2.9	15	82	17	60	20	2	0	77	0.88
12497667--12497800	19	7.3	19	73	15	104	23	2	2	71	1.11
12497835--12497927	29	3.1	29	61	8	69	38	4	16	40	1.68
12497826--12498459	120	5.4	117	83	7	694	44	7	12	35	1.71
12497824--12498459	238	2.7	234	81	7	773	44	7	12	35	1.71
12497825--12498460	178	3.6	177	84	7	797	44	7	12	35	1.71
12508719--12508870	9	15.8	9	71	15	72	19	3	2	75	1.07
12508731--12508857	19	6.2	20	69	23	77	21	2	3	73	1.09
12508737--12508853	15	7.5	15	69	20	55	21	2	3	72	1.11
12508798--12508867	5	13.8	5	75	19	65	18	5	0	75	0.99
12508806--12508857	21	2.6	20	85	14	72	19	5	0	75	1.01
12508889--12509331	58	7.6	57	83	6	443	44	6	13	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12508889--12509504	116	5.4	113	76	14	532	44	7	13	34	1.72
12509241--12509441	108	1.9	108	86	5	289	46	6	13	32	1.71
12509346--12509504	58	2.7	58	83	10	198	44	8	13	34	1.73
12509183--12509499	166	1.9	166	82	10	398	45	7	13	33	1.72
12511260--12511574	160	2.0	160	92	1	533	32	12	21	33	1.91
12515408--12515446	8	4.9	8	90	9	62	87	0	2	10	0.65
12515409--12515445	15	2.4	16	95	4	67	86	0	2	10	0.67
12516445--12516657	41	5.1	41	85	3	185	26	17	20	35	1.95
12516447--12516657	82	2.5	82	80	3	217	26	18	19	36	1.95
12516474--12516657	41	4.4	42	84	5	187	25	18	20	35	1.95
12516673--12516725	8	6.5	8	81	10	63	86	3	1	7	0.75
12516672--12516722	9	5.9	9	77	9	61	86	3	1	7	0.77
12516670--12516725	17	3.4	16	83	9	76	87	3	1	7	0.72
12517016--12517064	7	6.9	7	82	13	55	22	0	2	75	0.90
12517013--12517064	12	4.4	11	81	13	59	21	0	1	76	0.87
12517188--12517353	4	41.8	4	67	14	53	25	4	3	66	1.24
12517188--12517250	26	2.5	25	84	7	83	30	3	3	63	1.25
12517188--12517259	26	2.8	25	75	21	69	30	2	4	62	1.28
12517202--12517350	21	6.8	21	71	18	101	24	4	2	67	1.23
12517254--12517351	40	2.3	41	83	11	110	22	5	2	70	1.17
12517190--12517353	14	12.7	13	67	19	51	25	4	3	67	1.24
12518287--12518374	4	20.2	4	80	18	72	20	3	0	76	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12518215--12518374	75	2.1	74	80	10	173	21	3	1	73	1.06
12518394--12518696	64	4.8	64	75	11	200	44	6	12	36	1.67
12518402--12518807	58	6.7	58	77	13	317	43	6	12	37	1.69
12518412--12518572	63	2.5	64	92	1	261	39	5	13	41	1.67
12518412--12518629	64	3.5	61	83	10	225	41	5	12	39	1.68
12519957--12520024	35	1.9	35	85	5	93	35	16	13	35	1.87
12525601--12525652	14	3.5	14	76	19	52	19	15	1	63	1.40
12531234--12531275	3	14.7	3	90	9	70	28	0	0	71	0.86
12531268--12531330	32	1.9	33	87	9	94	6	20	1	71	1.16
12531806--12531843	20	1.9	20	94	0	67	39	5	26	28	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130