genome.fa.s556.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  9  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2529726--2529787	22	2.8	22	85	7	81	30	29	12	27	1.93
2530083--2530394	102	3.0	101	75	7	299	22	19	10	47	1.79
2530713--2530756	23	2.0	23	86	4	63	56	0	0	43	0.99
2531073--2531133	14	4.1	15	80	14	65	50	34	0	14	1.43
2531073--2531133	30	2.1	29	87	3	86	50	34	0	14	1.43
2543222--2543286	30	2.2	30	85	0	85	24	18	12	44	1.84
2551260--2551327	24	2.8	25	73	13	68	50	2	2	44	1.32
2552748--2552803	13	4.3	13	76	15	53	67	1	0	30	1.01
2561301--2561360	31	1.9	31	86	6	86	43	1	0	55	1.10
2562455--2562487	14	2.4	14	85	14	50	42	0	0	57	0.98
2594322--2594371	22	2.2	23	85	3	75	54	2	2	42	1.23
2594360--2594391	13	2.5	13	94	0	55	68	0	0	31	0.90
2597448--2597501	29	1.9	27	88	7	81	35	0	3	61	1.14
2597483--2597522	18	2.4	16	84	12	53	50	2	0	47	1.14
2610164--2610193	14	2.2	13	94	5	51	66	0	0	33	0.92
2610539--2610634	31	3.2	30	74	17	76	44	0	2	53	1.12
2610618--2610693	28	2.8	27	82	7	82	48	1	0	50	1.09
2610644--2610706	13	4.5	13	75	18	56	49	3	0	47	1.17
2613221--2613261	21	1.9	22	85	5	57	34	4	43	17	1.70
2616989--2617026	19	2.0	19	89	0	58	44	7	0	47	1.32
2619777--2619828	26	2.0	26	100	0	104	26	15	26	30	1.96
2626024--2626077	23	2.3	23	81	15	67	51	1	5	40	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2628117--2628154	20	1.9	20	88	0	58	44	5	7	42	1.56
2628172--2628215	23	1.9	23	86	9	63	52	2	0	45	1.13
2634253--2634301	24	2.0	24	96	0	89	40	10	20	28	1.85
2635871--2635899	3	9.7	3	100	0	58	0	31	34	34	1.58
2643375--2643435	24	2.6	24	74	10	63	63	3	0	32	1.10
2644744--2644801	28	2.1	27	81	12	64	41	0	0	58	0.98
2645317--2645406	42	2.1	42	91	0	144	44	7	3	44	1.49
2648158--2648200	6	6.7	6	82	15	50	30	0	0	69	0.88
2648159--2648197	7	5.7	7	82	17	55	30	0	0	69	0.89
2648158--2648197	13	3.0	13	96	3	71	32	0	0	67	0.91
2648633--2648720	21	4.2	20	67	25	56	44	0	2	53	1.13
2648630--2648768	64	2.3	62	88	6	203	46	0	1	51	1.15
2652101--2652135	10	3.6	10	88	7	54	77	0	22	0	0.78
2652134--2652173	14	2.8	14	88	11	55	67	0	0	32	0.91
2652143--2652173	3	10.7	3	93	6	55	67	0	0	32	0.91
2652331--2652409	27	2.9	27	74	11	79	50	3	1	44	1.28
2652453--2652503	21	2.4	21	86	0	66	33	5	1	58	1.33
2652212--2653481	642	2.0	627	90	4	1985	43	7	5	42	1.56
2657285--2657311	13	2.1	13	100	0	54	29	14	7	48	1.71
2664989--2665036	23	2.1	23	88	7	71	31	10	29	29	1.90
2667369--2667406	19	2.1	17	90	9	58	0	0	10	89	0.49
2667365--2667406	11	3.7	11	82	14	50	0	0	11	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2667369--2667404	13	2.8	13	86	0	54	0	0	11	88	0.50
2671707--2671762	24	2.3	24	84	6	69	48	0	0	51	1.00
2676350--2676402	21	2.4	22	84	6	63	56	3	1	37	1.28
2679221--2679255	4	8.8	4	93	0	61	48	25	0	25	1.51
2682938--2682976	17	2.3	17	86	8	53	48	0	0	51	1.00
2688024--2688082	5	11.8	5	100	0	118	61	20	0	18	1.35
2696557--2696584	6	4.7	6	100	0	56	53	14	0	32	1.41
2699336--2699373	19	1.9	19	89	5	58	36	13	26	23	1.91
2699375--2699404	15	1.9	16	93	6	53	36	0	3	60	1.14
2700042--2700081	21	1.9	21	85	10	55	17	7	10	65	1.46
2700437--2700483	12	3.9	12	84	13	53	10	4	4	80	0.98
2700507--2700545	3	13.0	3	100	0	78	33	0	0	66	0.92
2700602--2700659	21	2.9	21	82	5	66	36	5	8	50	1.56
2700678--2700714	19	1.9	19	88	0	56	32	2	10	54	1.49
2709247--2709367	59	2.1	59	98	0	233	56	1	18	23	1.51
2709333--2709461	64	2.0	64	100	0	258	58	4	17	20	1.56
2710064--2710095	3	10.7	3	100	0	64	68	0	31	0	0.90
2712465--2712512	21	2.2	23	78	17	57	27	6	0	66	1.15
2712480--2712520	22	1.9	21	90	5	64	26	7	0	65	1.18
2712920--2712950	2	15.5	2	100	0	62	0	51	0	48	1.00
2716029--2716067	19	2.1	19	100	0	78	46	0	0	53	1.00
2724274--2724314	2	20.5	2	100	0	82	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2725481--2725632	77	2.0	77	90	0	241	40	16	25	17	1.90
2731556--2731637	37	2.2	36	83	14	96	52	0	3	43	1.18
2743025--2743052	3	9.3	3	100	0	56	64	0	35	0	0.94
2747234--2747263	15	1.9	15	93	6	51	0	16	0	83	0.65
2748485--2748522	16	2.4	16	86	8	51	0	18	2	78	0.86
2748564--2748615	27	2.0	27	81	7	63	38	3	1	55	1.29
2754734--2754794	32	1.9	32	86	0	86	39	11	14	34	1.82
2757714--2757763	24	2.2	24	89	7	77	46	4	0	50	1.20
2757724--2757771	24	2.0	24	92	4	80	43	6	0	50	1.27
2764938--2764994	17	3.3	16	75	22	53	71	3	1	22	1.10
2766067--2766115	19	2.5	20	87	12	66	26	0	10	63	1.26
2768745--2768779	14	2.4	14	90	4	52	45	2	0	51	1.16
2773753--2773778	3	8.7	3	100	0	52	65	0	34	0	0.93
2775595--2775626	12	2.7	12	90	0	55	21	18	40	18	1.91
2775565--2775641	24	3.2	24	72	5	75	12	23	38	24	1.90
2776934--2776981	23	2.1	23	85	11	64	16	8	16	58	1.61
2778321--2778346	2	13.0	2	100	0	52	50	0	0	50	1.00
2781857--2781911	27	2.0	27	89	0	83	36	9	14	40	1.78
2782067--2782105	2	19.5	2	83	0	51	53	2	0	43	1.14
2792701--2792776	30	2.5	30	86	0	107	52	0	3	43	1.19
2795629--2795687	29	2.2	27	82	17	70	42	0	0	57	0.98
2796330--2796409	24	3.7	21	80	11	65	61	0	2	36	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2796348--2796409	24	2.8	23	83	11	69	62	0	3	33	1.11
2799319--2799372	27	2.0	27	85	0	72	33	3	0	62	1.12
2799332--2799383	22	2.5	20	79	14	59	32	5	0	61	1.20
2799582--2799642	30	2.1	30	81	3	70	39	8	6	45	1.60
2809746--2809797	21	2.4	22	90	9	81	53	0	0	46	1.00
2810156--2810219	30	2.2	28	84	15	85	34	4	3	57	1.35
2810171--2810220	16	3.2	16	72	11	59	38	4	2	56	1.30
2810245--2810296	21	2.4	22	87	3	70	51	0	7	40	1.30
2810271--2810344	30	2.5	30	75	4	78	43	2	10	43	1.53
2810620--2810693	36	2.1	36	89	0	112	44	5	8	41	1.57
2813917--2813960	13	3.3	13	77	3	52	45	0	2	52	1.13
2815642--2815769	52	2.5	52	84	5	161	28	16	8	46	1.76
2816230--2816270	12	3.7	11	84	15	50	80	7	0	12	0.90
2817326--2817364	14	2.7	14	88	4	51	84	5	0	10	0.76
2821280--2821345	15	4.4	15	69	14	55	22	0	30	46	1.52
2821290--2821359	29	2.4	30	92	2	115	21	0	27	51	1.48
2821290--2821374	29	2.9	28	84	10	91	21	0	28	50	1.49
2821798--2821867	3	23.3	3	97	0	95	25	0	7	67	1.16
2822035--2822087	17	2.9	19	73	21	60	50	11	5	32	1.61
2822237--2822296	24	2.5	25	86	5	79	50	11	3	35	1.56
2822389--2822616	32	7.7	32	64	23	113	52	12	5	29	1.60
2822387--2822802	55	7.3	55	71	14	254	52	11	5	30	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2822498--2822662	56	3.0	55	81	7	156	51	12	4	31	1.60
2822651--2822714	31	2.1	31	87	0	92	51	14	7	26	1.69
2822717--2822785	20	3.8	20	66	28	64	52	7	5	34	1.53
2822718--2822780	32	2.0	32	100	0	126	53	7	6	31	1.55
2822743--2822832	44	2.1	43	83	10	112	54	7	3	34	1.46
2822778--2822841	20	3.2	20	80	14	78	53	9	3	34	1.49
2822757--2822832	20	3.7	20	78	8	73	53	6	2	36	1.41
2824968--2824999	15	2.0	17	88	11	50	62	0	0	37	0.95
2824991--2825034	21	2.1	21	87	8	63	52	0	2	45	1.13
2829719--2829753	7	4.9	7	89	3	52	45	2	0	51	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130