genome.fa.s556.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  81  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16300603--16300651	20	2.6	18	79	17	55	67	2	0	30	1.02
16300586--16300642	26	2.2	26	81	15	64	68	5	0	26	1.11
16300749--16300810	17	3.3	19	82	6	56	35	0	4	59	1.19
16300780--16300817	17	2.2	18	90	4	60	39	2	0	57	1.12
16300796--16300847	26	2.0	27	88	3	79	32	1	5	59	1.32
16300852--16300896	22	2.0	22	86	0	63	20	0	8	71	1.12
16301538--16301576	19	2.0	20	90	5	62	48	0	0	51	1.00
16301512--16301580	24	2.6	24	84	15	84	52	0	0	47	1.00
16301514--16301614	27	3.4	29	78	15	100	51	0	0	47	1.07
16303134--16303174	13	3.2	13	79	6	57	36	0	4	58	1.20
16305322--16305374	24	2.1	26	86	10	74	26	1	3	67	1.17
16305925--16305970	24	1.9	24	90	0	74	69	6	4	19	1.28
16307876--16307914	20	2.0	19	90	5	60	64	12	5	17	1.46
16311399--16311436	8	4.5	8	87	12	58	44	0	2	52	1.14
16311397--16311483	9	9.1	9	74	16	68	50	2	3	43	1.31
16311676--16311729	20	2.7	19	73	21	56	59	7	0	33	1.25
16311696--16311764	35	1.9	36	82	5	86	57	7	2	31	1.40
16311800--16311861	19	3.3	19	80	11	65	67	3	1	27	1.15
16311928--16311965	20	1.9	20	94	0	67	36	2	5	55	1.37
16312010--16312052	18	2.4	18	84	3	52	39	2	2	55	1.25
16312082--16312125	21	2.1	21	86	0	61	20	0	9	70	1.14
16312302--16312346	19	2.5	18	80	19	58	66	4	2	26	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16312325--16312386	29	2.1	29	82	5	72	59	3	1	35	1.23
16312780--16312818	19	2.0	20	90	5	62	48	0	0	51	1.00
16312770--16312822	24	2.1	26	89	6	83	50	0	0	49	1.00
16312780--16312837	24	2.4	24	80	5	64	50	0	0	50	1.00
16312773--16312847	28	2.8	28	82	8	84	49	0	0	50	1.00
16312969--16313026	21	2.8	21	86	2	73	37	6	0	55	1.27
16315198--16315232	18	2.0	17	88	5	52	60	2	2	34	1.26
16318794--16318851	14	3.8	15	77	16	57	48	0	0	51	1.00
16318814--16318861	18	2.7	18	84	12	55	52	0	2	45	1.12
16318772--16318851	32	2.4	33	84	12	94	48	0	1	50	1.08
16319539--16319593	26	2.1	27	82	3	67	30	25	7	36	1.83
16320224--16320268	22	2.0	23	83	12	58	51	6	2	40	1.41
16325474--16325505	15	2.1	15	100	0	64	18	0	18	62	1.33
16328573--16328600	2	14.0	2	100	0	56	50	0	0	50	1.00
16331577--16331601	13	1.9	13	100	0	50	64	0	36	0	0.94
16332404--16332455	12	4.2	12	82	7	68	84	1	0	13	0.70
16333836--16333883	19	2.6	18	78	12	53	43	2	0	54	1.12
16335776--16335829	21	2.6	22	88	5	69	44	16	18	20	1.87
16342831--16342868	19	2.0	19	94	0	67	31	23	5	39	1.77
16348573--16348630	14	3.8	15	77	16	57	48	0	0	51	1.00
16348593--16348640	18	2.7	18	84	12	55	52	0	2	45	1.12
16348551--16348630	32	2.4	33	84	12	94	48	0	1	50	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16357494--16357525	15	2.1	15	100	0	64	18	0	18	62	1.33
16377592--16377654	22	2.7	24	80	9	76	41	4	6	47	1.50
16377568--16377649	24	3.5	23	80	6	76	41	7	4	46	1.53
16377803--16377959	22	7.1	22	79	5	147	38	3	8	49	1.53
16377582--16378061	66	7.3	64	69	15	189	40	7	6	46	1.57
16377994--16378080	42	2.0	44	82	8	108	37	6	6	48	1.57
16378122--16378200	22	3.5	23	79	5	90	36	8	6	48	1.60
16378481--16378592	22	5.1	21	75	9	75	41	4	8	45	1.56
16378503--16378590	44	2.0	44	86	8	126	40	4	6	47	1.50
16378470--16378576	22	4.9	22	78	4	99	40	4	9	45	1.57
16378557--16378624	32	2.1	32	88	0	100	42	5	4	47	1.48
16378598--16378639	22	1.9	22	85	0	57	35	4	11	47	1.61
16378664--16378720	21	2.6	22	86	5	80	42	7	3	47	1.47
16378664--16378750	21	4.1	21	76	8	79	41	8	3	47	1.50
16378664--16378768	22	4.8	21	75	13	86	40	8	4	46	1.55
16378697--16378805	45	2.5	44	83	4	130	40	8	6	44	1.60
16378722--16378807	22	3.9	22	74	7	84	40	9	4	45	1.57
16378893--16379224	22	15.0	22	67	14	107	35	7	6	51	1.55
16379046--16379201	66	2.4	66	80	8	183	33	7	7	52	1.56
16378681--16379224	44	12.3	43	71	10	206	35	8	6	49	1.59
16379662--16379849	22	8.6	22	69	12	68	36	9	3	51	1.52
16382309--16382616	153	2.0	153	88	3	460	46	4	5	43	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16383399--16383463	19	3.4	19	74	17	64	38	4	0	56	1.20
16383748--16383778	12	2.6	12	94	0	53	45	0	0	54	0.99
16384561--16384597	3	12.7	3	94	5	67	32	0	0	67	0.91
16385413--16385564	77	2.0	78	86	1	216	30	25	12	31	1.93
16393819--16393872	27	2.0	27	85	0	72	53	1	27	16	1.53
16395869--16397014	576	2.0	577	93	0	1954	25	17	18	37	1.93
16401815--16401941	68	1.9	68	81	0	155	35	12	15	36	1.86
16402007--16402168	84	1.9	84	88	2	245	40	11	14	33	1.82
16407761--16407845	30	2.9	30	81	8	86	45	5	14	34	1.68
16409146--16409220	29	2.6	28	78	4	78	58	1	5	34	1.29
16412888--16412930	16	2.5	18	85	14	72	30	0	4	65	1.13
16412892--16412979	25	3.4	24	72	13	68	23	2	4	69	1.19
16412993--16413291	46	6.6	46	79	3	221	38	16	10	34	1.82
16412993--16413253	90	2.9	91	79	7	246	39	16	10	34	1.82
16412993--16413294	136	2.2	136	80	4	322	38	16	9	34	1.82
16413034--16413289	90	2.8	91	80	4	286	38	17	10	33	1.84
16413773--16413824	23	2.3	23	86	6	70	38	19	21	21	1.94
16414092--16414292	63	3.2	62	78	2	197	30	17	17	33	1.94
16414044--16414292	94	2.7	95	85	3	317	30	17	18	32	1.94
16414034--16414292	31	8.3	31	76	5	207	31	16	18	33	1.93
16417252--16417290	13	3.0	13	78	14	53	56	0	0	43	0.99
16417296--16417442	39	3.8	38	75	8	116	42	7	7	42	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16417286--16417430	78	1.8	79	80	4	177	40	7	6	44	1.60
16417296--16417442	40	3.7	39	75	4	125	42	7	7	42	1.61
16418964--16419066	6	16.3	6	72	18	50	1	12	5	79	0.99
16423453--16423484	3	10.7	3	100	0	64	65	0	0	34	0.93
16425725--16425901	57	3.1	57	86	4	214	45	12	20	20	1.84
16427049--16427141	48	1.9	48	86	4	134	21	36	10	31	1.88
16428597--16428675	31	2.5	31	83	4	97	29	17	13	39	1.89
16429205--16429308	52	2.0	52	94	0	181	28	15	6	49	1.70
16429884--16429962	35	2.3	35	84	0	95	45	27	1	25	1.61
16428144--16430361	989	2.3	985	81	4	2535	33	21	8	36	1.84
16431265--16431290	12	2.2	12	100	0	52	15	42	7	34	1.75
16434272--16434312	3	13.7	3	100	0	82	68	31	0	0	0.90
16439757--16439836	18	4.6	18	70	14	60	43	0	2	53	1.14
16440426--16440505	24	3.0	28	67	23	82	41	15	2	41	1.60
16440430--16440505	23	3.1	23	72	17	80	43	14	2	39	1.59
16440321--16440551	51	4.5	50	75	13	166	38	14	1	44	1.56
16440353--16440551	102	1.9	103	85	3	276	39	12	1	46	1.51
16441569--16441638	35	2.1	33	86	5	95	44	15	2	37	1.62
16441577--16441740	62	2.7	62	81	8	185	39	23	4	32	1.74
16445209--16445619	129	3.2	129	80	5	410	44	11	8	36	1.71
16445825--16445970	24	6.1	24	79	1	132	44	6	13	35	1.69
16446972--16447133	78	2.1	78	94	1	281	40	9	9	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16448848--16449271	73	5.8	73	86	3	568	45	8	8	37	1.66
16448848--16449271	219	1.9	218	89	2	663	45	8	8	37	1.66
16450052--16450077	13	2.0	13	100	0	52	30	30	7	30	1.85
16451906--16452020	31	3.8	31	73	5	110	35	17	20	26	1.95
16453711--16453755	23	2.0	22	86	4	63	15	8	8	66	1.43
16455386--16455419	2	17.0	2	93	0	59	50	2	0	47	1.16
16456460--16456510	19	2.7	19	78	6	50	60	0	3	35	1.15
16456812--16456855	14	3.1	14	81	15	54	81	6	4	6	0.97
16458640--16458682	13	3.2	13	90	6	68	20	0	2	76	0.89
16458844--16458982	24	5.8	24	83	3	172	35	5	5	53	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130