genome.fa.s556.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  37  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9213983--9216082	946	2.2	946	82	6	2491	41	12	8	37	1.74
9215819--9216050	121	1.9	120	82	4	288	43	15	7	34	1.75
9216061--9216276	118	1.8	118	85	0	306	40	14	6	38	1.71
9215811--9216400	248	2.4	250	82	4	674	40	15	6	37	1.74
9216179--9217234	130	8.2	129	77	6	845	39	15	6	38	1.74
9217795--9218529	387	1.9	387	79	6	826	40	15	6	37	1.73
9217795--9218547	130	5.8	128	76	7	630	39	15	6	37	1.73
9226066--9227486	129	11.2	124	72	13	746	38	15	7	38	1.76
9226719--9226968	118	2.2	116	83	4	317	39	13	8	38	1.74
9227464--9227574	53	2.1	53	88	3	161	41	17	1	39	1.60
9227517--9228767	130	9.6	129	75	6	710	39	15	7	36	1.77
9227517--9228708	260	4.6	260	76	8	914	39	16	7	36	1.77
9227701--9228754	388	2.7	385	80	6	1058	39	15	7	36	1.76
9228888--9229402	129	4.0	129	80	6	533	37	15	8	37	1.79
9228888--9229401	259	2.0	259	82	4	628	37	15	8	37	1.80
9229409--9230731	130	10.4	127	73	9	596	39	15	8	36	1.78
9229408--9230731	129	10.4	129	73	9	774	39	15	8	36	1.78
9230739--9230984	130	1.9	129	83	6	318	41	14	8	35	1.77
9230742--9231056	130	2.4	128	80	8	302	40	15	7	36	1.77
9231288--9231534	123	2.0	124	83	2	309	39	16	8	35	1.80
9232165--9233251	130	8.4	128	75	7	781	38	18	7	34	1.80
9232309--9232801	256	1.9	258	81	6	606	40	18	7	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9232275--9233231	389	2.5	385	79	6	949	38	17	7	35	1.79
9233256--9235111	130	14.4	128	74	8	1212	38	17	8	36	1.79
9233254--9235111	129	14.4	129	74	8	1190	38	17	8	36	1.79
9233256--9235111	259	7.2	256	77	7	1316	38	17	8	36	1.79
9233514--9235088	388	4.1	390	74	8	850	39	17	7	35	1.78
9233296--9237062	518	7.2	515	71	12	1293	39	17	7	35	1.78
9235147--9237742	130	20.2	129	73	8	1635	39	16	7	35	1.78
9238200--9238381	94	1.9	93	85	5	251	40	14	9	35	1.80
9238291--9239541	128	9.6	129	78	8	1169	40	16	7	35	1.77
9238294--9239541	129	9.6	128	78	7	1140	40	16	7	35	1.77
9238291--9239541	387	3.2	385	84	5	1538	40	16	7	35	1.77
9239439--9239643	110	1.8	111	81	10	258	38	16	4	40	1.70
9240019--9240809	128	6.2	129	76	6	703	38	18	7	35	1.79
9240815--9240890	23	3.2	24	71	14	77	39	14	2	43	1.59
9240875--9241247	186	2.0	191	83	4	481	35	16	9	39	1.80
9241068--9242012	129	7.4	128	77	6	717	36	16	9	38	1.80
9241127--9242012	252	3.5	256	78	6	715	37	15	9	37	1.80
9241127--9242012	381	2.3	383	78	7	913	37	15	9	37	1.80
9243620--9243660	12	3.5	11	84	12	55	17	2	0	80	0.82
9244473--9244498	13	2.0	13	100	0	52	30	7	15	46	1.74
9244846--9244886	20	2.0	20	86	9	57	63	4	12	19	1.46
9246074--9246138	3	21.7	3	78	12	71	66	0	4	29	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9246318--9246356	19	2.1	19	95	0	69	43	33	7	15	1.75
9248566--9248624	16	3.8	16	75	20	54	77	1	15	5	1.01
9249417--9249480	29	2.2	29	88	0	92	25	21	18	34	1.96
9249536--9249890	32	11.3	32	71	10	195	30	16	18	34	1.93
9249536--9249762	92	2.5	92	93	0	373	28	16	19	35	1.93
9249617--9249732	60	1.9	61	85	1	162	27	16	19	36	1.93
9249900--9249980	22	3.7	23	79	9	71	29	28	18	23	1.98
9249967--9249997	14	2.2	14	100	0	62	29	29	22	19	1.98
9249923--9250038	57	2.0	58	85	5	155	31	24	18	25	1.97
9250259--9250343	32	2.7	32	78	15	79	31	12	18	36	1.89
9250513--9250636	31	4.0	31	80	2	133	23	25	11	40	1.87
9250464--9250636	62	2.8	62	80	1	168	23	26	12	38	1.89
9250531--9250655	31	4.0	31	77	10	130	22	26	12	39	1.89
9250721--9250822	6	16.7	6	71	21	52	78	13	0	6	1.00
9250701--9250763	20	3.2	19	84	8	74	77	17	0	4	0.93
9250753--9250820	5	13.2	5	81	9	57	79	11	1	7	0.99
9250727--9250822	32	3.0	31	79	13	106	78	13	1	7	1.01
9250742--9250815	38	1.9	38	86	10	107	79	10	1	8	0.99
9250748--9250822	11	7.0	11	76	10	66	78	13	1	6	1.00
9251724--9251779	20	2.8	21	80	20	66	73	8	10	7	1.26
9253250--9253285	12	3.3	11	88	11	56	72	0	5	22	1.05
9258206--9258240	15	2.3	15	90	0	52	5	20	0	74	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9263583--9263750	86	2.0	86	90	0	264	39	14	17	28	1.89
9263563--9263751	43	4.4	43	81	2	220	40	14	17	27	1.88
9275355--9275396	4	11.0	4	80	10	52	73	2	2	21	1.06
9280920--9280959	20	1.9	22	85	10	57	15	20	0	65	1.28
9281639--9282700	130	8.2	129	76	8	761	39	16	7	35	1.78
9281989--9282550	257	2.2	259	81	5	645	38	17	7	35	1.79
9282816--9284971	130	16.7	130	76	8	1566	39	15	7	37	1.75
9282816--9284971	909	2.4	901	79	6	2245	39	15	7	37	1.75
9282947--9284971	388	5.2	388	75	9	1057	39	15	7	37	1.75
9285051--9286092	129	8.1	129	74	6	627	38	16	8	37	1.78
9285077--9286092	259	4.0	259	74	9	643	38	15	8	37	1.78
9286036--9286154	60	2.0	59	86	4	168	32	16	12	37	1.87
9285790--9286386	319	1.9	319	81	3	745	37	16	8	37	1.79
9286096--9286681	129	4.6	128	79	5	578	38	16	8	37	1.79
9286147--9286631	259	1.9	254	83	4	634	38	16	6	38	1.76
9286595--9286764	77	2.2	75	80	6	182	36	15	13	34	1.87
9287526--9287617	34	2.7	34	81	0	94	30	19	17	32	1.95
9288845--9288888	19	2.2	20	80	4	54	43	2	0	54	1.12
9290287--9290323	9	4.2	9	80	19	51	10	10	10	67	1.42
9293380--9293451	2	36.0	2	88	0	108	47	0	2	50	1.15
9293544--9293568	11	2.3	11	100	0	50	0	12	0	88	0.53
9297200--9297244	5	9.4	5	85	4	58	42	2	0	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9300476--9300508	3	11.0	3	93	0	57	30	0	3	66	1.06
9303025--9303067	20	2.1	20	83	12	52	48	0	20	30	1.50
9305789--9305823	16	2.2	16	94	0	61	31	14	11	42	1.81
9307392--9307442	21	2.5	21	90	3	77	27	27	29	15	1.96
9320805--9320852	18	2.8	16	79	17	51	41	4	0	54	1.20
9322202--9322249	19	2.4	21	86	6	64	52	16	0	31	1.45
9322416--9322454	18	2.1	19	90	4	62	48	15	5	30	1.66
9322420--9322460	18	2.3	18	82	0	55	53	14	7	24	1.66
9322605--9322643	18	2.2	18	90	0	60	53	2	7	35	1.43
9322651--9322749	18	5.6	18	76	11	80	37	14	16	32	1.88
9322641--9322753	36	3.2	34	72	11	111	38	15	15	30	1.88
9322597--9322763	71	2.4	70	83	1	217	44	11	13	31	1.79
9323925--9323992	25	2.7	25	81	0	82	19	27	19	33	1.96
9327956--9328023	28	2.5	28	87	2	93	42	11	16	29	1.83
9331728--9331793	29	2.3	29	86	2	89	46	7	12	33	1.69
9332125--9332151	12	2.2	12	100	0	54	70	0	7	22	1.12
9332579--9332653	37	2.0	37	94	0	132	36	17	8	38	1.79
9333044--9333267	123	1.8	123	80	9	269	36	8	10	45	1.69
9333372--9333413	4	10.2	4	80	14	50	73	0	0	26	0.83
9333372--9333413	12	3.4	13	83	9	61	73	0	0	26	0.83
9337048--9337132	7	11.9	7	76	7	55	36	5	1	56	1.31
9337031--9337132	16	6.8	16	73	17	74	37	6	0	54	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9340551--9340601	22	2.3	22	93	0	84	41	15	7	35	1.76
9340547--9340638	44	2.1	43	80	9	98	40	11	10	36	1.77
9340612--9340652	21	2.0	21	85	0	55	43	7	12	36	1.70
9340988--9341034	21	2.1	22	84	7	60	51	19	8	21	1.73
9341188--9341625	144	3.0	144	96	0	822	41	21	5	31	1.76
9342413--9342451	20	2.0	20	94	0	69	46	10	17	25	1.80
9342592--9342780	92	2.0	93	95	1	344	32	8	12	46	1.71
9343717--9343768	26	2.0	27	84	3	70	32	5	19	42	1.75
9344018--9344234	62	3.5	61	69	8	150	33	15	15	35	1.90
9346015--9346123	7	15.4	7	72	5	58	43	39	1	15	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130