genome.fa.s556.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  39  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9460925--9461145	3	78.7	3	70	14	96	57	4	6	32	1.43
9460925--9461043	46	2.5	48	77	8	118	57	3	6	31	1.41
9460925--9461147	100	2.2	102	81	7	251	57	4	6	31	1.42
9461033--9461092	29	2.1	29	84	6	77	53	1	8	36	1.41
9461091--9461145	23	2.4	23	81	0	65	61	7	1	29	1.33
9461103--9461141	20	2.0	20	85	10	53	64	5	0	30	1.15
9461850--9461939	47	1.9	47	81	0	108	35	12	11	41	1.78
9462196--9462473	138	2.0	139	97	1	522	47	8	15	28	1.75
9464987--9465023	16	2.4	16	95	4	67	62	5	16	16	1.51
9465303--9465344	22	1.9	22	95	0	75	28	11	11	47	1.76
9468219--9468262	22	2.0	22	90	0	70	34	11	13	40	1.81
9475060--9475108	25	1.9	25	83	4	62	8	12	8	71	1.31
9484295--9484345	10	5.4	9	77	11	50	84	0	3	11	0.75
9484304--9484352	12	4.2	12	79	5	57	85	0	2	12	0.68
9484307--9484351	6	7.8	6	76	18	51	84	0	2	13	0.72
9485302--9485414	49	2.3	49	84	3	147	36	13	14	36	1.85
9494676--9494930	3	90.7	3	69	15	116	58	3	5	32	1.40
9494682--9494793	20	5.4	22	84	10	98	56	0	6	36	1.31
9494705--9494792	5	17.0	5	78	14	90	57	1	2	38	1.18
9494682--9494813	39	3.3	40	80	14	148	56	1	6	35	1.33
9494705--9494932	38	6.0	38	71	13	175	59	3	3	32	1.34
9494683--9494845	77	2.1	76	80	7	177	57	1	6	34	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9494876--9494930	23	2.4	23	81	0	65	61	7	1	29	1.33
9495188--9495339	30	5.1	30	73	8	80	30	13	17	37	1.89
9495228--9495362	30	4.5	31	75	10	86	34	14	14	36	1.87
9495389--9495535	30	4.9	30	73	3	89	35	10	16	38	1.82
9495633--9495723	47	1.9	47	81	0	110	35	14	10	39	1.81
9498919--9498960	22	1.9	22	95	0	75	28	11	11	47	1.76
9501801--9501844	22	2.0	22	90	0	70	34	11	13	40	1.81
9505590--9505628	7	5.6	7	90	9	62	46	0	53	0	1.00
9508660--9508708	25	1.9	25	83	4	62	8	12	8	71	1.31
9520142--9520176	16	2.2	16	89	0	52	42	8	14	34	1.76
9520502--9520534	11	3.0	11	100	0	66	54	36	0	9	1.32
9520912--9520948	19	1.9	19	94	0	65	43	18	8	29	1.79
9529763--9530018	130	2.0	132	91	3	419	20	25	8	46	1.79
9533311--9533347	11	3.5	11	92	7	60	13	0	5	81	0.86
9544403--9544635	126	1.9	122	83	5	297	33	14	13	38	1.85
9544525--9545480	187	5.1	186	81	4	966	35	12	11	40	1.80
9544525--9545496	374	2.6	372	79	4	1071	35	12	11	39	1.80
9546210--9546256	12	3.9	12	85	0	67	27	8	23	40	1.83
9546210--9546264	12	4.6	12	86	0	65	27	10	21	40	1.87
9546261--9546304	12	3.6	12	78	6	52	27	9	22	40	1.84
9549686--9549916	124	1.9	123	81	7	288	38	13	12	35	1.83
9561587--9561644	29	2.0	29	86	6	82	75	1	22	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9561597--9561636	13	3.2	13	82	3	55	80	0	20	0	0.72
9561602--9561644	15	2.9	15	75	10	52	79	0	20	0	0.74
9561597--9561644	22	2.0	24	88	11	73	79	0	20	0	0.74
9562793--9562835	9	4.8	9	86	8	61	76	0	9	13	1.01
9562793--9562855	18	3.4	19	82	10	69	74	1	12	11	1.14
9562808--9562877	18	3.8	18	80	16	65	74	1	18	5	1.09
9562829--9562877	9	5.3	9	81	11	55	73	2	22	2	1.04
9563839--9564302	72	6.4	73	70	11	256	18	18	14	48	1.80
9564187--9564278	36	2.6	36	75	11	91	14	19	16	50	1.79
9566614--9566648	3	12.0	3	93	6	63	68	0	0	31	0.90
9566816--9566874	26	2.3	26	82	14	77	64	0	3	32	1.10
9566811--9566879	35	1.9	36	82	8	88	63	0	4	31	1.14
9566965--9567035	12	5.7	12	72	11	54	47	22	4	25	1.69
9567061--9567132	26	2.8	26	82	12	87	48	22	9	19	1.77
9567408--9567442	10	3.4	10	84	7	52	77	0	2	20	0.90
9578352--9578415	18	3.6	18	71	14	60	48	6	14	31	1.68
9578356--9578428	35	2.1	35	89	5	112	50	6	15	27	1.69
9587458--9587510	25	2.1	25	89	0	79	47	18	9	24	1.78
9592982--9593014	16	2.1	16	100	0	66	42	12	6	39	1.67
9594924--9595030	48	2.2	48	94	1	187	30	28	14	25	1.95
9596057--9596092	2	18.0	2	94	0	63	47	0	0	52	1.00
9603785--9603816	16	2.1	15	94	5	55	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9603948--9604072	50	2.4	53	80	12	143	40	4	5	49	1.47
9605229--9605272	22	2.0	22	95	0	79	43	13	11	31	1.80
9608922--9608979	25	2.4	25	85	5	75	41	17	27	13	1.87
9609128--9609171	22	2.0	22	95	0	79	43	13	11	31	1.80
9613924--9613996	35	2.2	35	88	9	109	47	8	35	8	1.63
9616766--9616797	3	10.7	3	100	0	64	31	0	0	68	0.90
9617754--9617786	13	2.4	14	90	5	50	18	12	9	60	1.57
9617778--9617821	22	2.0	22	90	0	70	43	11	11	34	1.77
9621777--9621819	22	2.0	22	90	0	68	41	6	13	37	1.72
9626054--9626098	16	2.8	16	89	3	63	75	0	4	20	0.97
9626378--9626434	29	2.0	29	82	6	71	52	8	7	31	1.59
9626370--9626508	22	6.4	22	73	11	79	45	9	7	38	1.64
9626408--9626508	22	4.6	22	76	11	91	43	8	5	41	1.60
9626525--9626584	19	3.2	18	79	13	50	45	13	13	28	1.81
9629049--9629080	16	2.0	16	93	0	55	40	12	15	31	1.85
9632873--9633091	111	2.0	111	96	0	402	26	15	19	37	1.92
9635143--9635300	59	2.7	59	82	4	196	46	12	10	31	1.74
9635264--9635343	21	3.8	21	81	4	99	52	15	5	27	1.63
9635255--9635314	21	2.8	22	84	5	86	51	13	6	28	1.66
9635255--9635343	43	2.1	42	85	2	115	51	14	5	28	1.65
9635255--9635343	21	4.2	22	77	7	76	51	14	5	28	1.65
9640230--9640403	94	1.9	94	82	4	226	32	11	13	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9640743--9640792	21	2.4	21	83	9	59	68	8	0	24	1.16
9651405--9651461	21	2.7	21	83	5	62	28	21	22	28	1.99
9658090--9658378	48	5.9	48	78	6	276	40	13	14	31	1.85
9658090--9658377	146	2.0	145	82	7	352	40	13	14	31	1.85
9658354--9658406	23	2.3	23	84	12	72	39	9	3	47	1.54
9667694--9667726	12	2.8	12	86	4	50	18	6	0	75	1.00
9671682--9671724	7	5.9	7	81	10	50	2	6	4	86	0.79
9671682--9671724	15	2.9	15	85	0	59	2	6	4	86	0.79
9678099--9678223	7	18.1	7	70	12	62	19	1	34	44	1.60
9678158--9678222	13	4.8	13	77	7	67	23	3	32	41	1.70
9678152--9678223	20	3.5	20	78	1	81	22	2	31	43	1.68
9678272--9678302	14	2.2	14	94	0	53	19	0	29	51	1.47
9686776--9686855	33	2.5	30	75	22	74	70	2	15	12	1.28
9686784--9686855	31	2.2	33	80	9	87	72	1	13	12	1.20
9692197--9692551	189	1.9	190	84	6	477	37	15	9	37	1.80
9692197--9692584	192	2.0	187	82	7	446	38	14	10	37	1.80
9692524--9692650	67	1.9	67	88	6	195	37	14	9	38	1.79
9692583--9692837	62	4.1	60	73	10	183	33	14	11	40	1.81
9692585--9692829	126	2.0	125	81	7	291	31	14	11	42	1.82
9692912--9693262	187	1.9	184	83	6	458	39	10	13	37	1.79
9694307--9694331	13	1.9	13	100	0	50	36	0	0	64	0.94
9696828--9697314	253	1.9	254	91	0	787	32	10	20	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9698559--9698595	13	2.8	13	87	0	56	24	8	5	62	1.44
9699628--9700196	161	3.5	160	80	5	608	32	10	14	42	1.79
9700579--9700673	18	5.4	18	72	14	56	77	10	1	10	1.03
9700613--9700654	19	2.2	19	87	8	59	73	14	0	11	1.09
9700632--9700672	12	3.1	14	90	10	61	80	12	0	7	0.90
9701016--9701064	20	2.4	21	86	3	64	63	6	18	12	1.48
9703740--9704044	33	9.2	33	72	9	145	35	16	11	36	1.85
9703721--9704044	67	4.8	66	69	10	201	35	16	12	35	1.86
9704369--9704581	19	11.1	18	78	9	68	16	0	36	46	1.54
9704377--9704606	7	35.6	7	68	17	79	17	1	35	45	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130