genome.fa.s556.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  63  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13309104--13309235	19	6.8	19	70	10	70	59	3	2	34	1.25
13309116--13309178	30	2.1	29	85	8	83	57	3	0	39	1.15
13309377--13309492	9	11.7	10	72	13	55	56	7	0	34	1.34
13309437--13309493	19	2.9	19	78	17	55	59	3	1	35	1.25
13309377--13309493	20	5.9	20	74	15	73	57	7	0	34	1.33
13311172--13311211	20	2.0	21	85	5	55	40	12	2	45	1.56
13312187--13312247	24	2.5	25	81	5	70	39	0	3	57	1.15
13312412--13312461	14	3.6	14	77	20	59	44	6	4	46	1.47
13323114--13323177	24	2.6	24	80	7	76	26	0	3	70	1.02
13323526--13323578	27	1.9	27	81	11	63	7	15	3	73	1.20
13324990--13325014	2	12.5	2	100	0	50	48	0	0	52	1.00
13327695--13327726	2	16.0	2	100	0	64	50	0	0	50	1.00
13335125--13335168	17	2.7	16	86	6	61	63	0	0	36	0.95
13335125--13335391	139	1.9	137	82	8	328	41	5	5	46	1.53
13335849--13335888	16	2.4	17	91	4	64	27	10	2	60	1.42
13335865--13335911	24	1.9	25	87	12	71	29	4	4	61	1.34
13336683--13336768	42	2.0	43	84	8	115	39	9	6	44	1.64
13337456--13337496	17	2.4	17	88	12	57	41	2	0	56	1.13
13339913--13339950	20	1.9	20	84	10	51	23	0	5	71	1.07
13340371--13340702	87	3.8	87	79	2	355	29	13	13	43	1.82
13340371--13340702	44	7.6	44	77	1	319	29	13	13	43	1.82
13341006--13341047	19	2.3	19	91	4	68	35	2	26	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13342335--13342409	15	5.4	14	69	18	59	38	9	16	36	1.80
13342326--13342414	27	3.3	27	98	0	169	35	10	13	40	1.78
13342589--13342753	91	1.8	91	89	1	260	43	10	10	35	1.73
13344683--13344805	4	30.5	4	75	1	66	44	8	6	40	1.60
13344683--13344805	6	20.3	6	83	1	66	44	8	6	40	1.60
13344683--13344805	10	12.2	10	79	1	66	44	8	6	40	1.60
13351155--13351203	2	25.0	2	87	4	73	53	0	0	46	1.00
13359159--13359197	20	1.9	21	89	5	62	33	5	2	58	1.33
13359295--13359357	19	3.9	16	75	22	60	47	0	0	52	1.00
13359317--13359357	14	3.0	14	89	3	57	48	0	0	51	1.00
13360332--13360362	2	16.0	2	93	6	55	51	0	0	48	1.00
13364355--13364405	23	2.3	23	86	6	70	17	9	3	68	1.33
13365991--13366032	15	2.6	17	81	11	52	76	0	23	0	0.79
13367632--13367657	2	13.0	2	100	0	52	50	0	0	50	1.00
13370669--13370738	6	11.3	6	77	11	61	22	2	0	74	0.95
13370836--13370905	28	2.4	29	77	13	74	21	5	2	70	1.22
13370846--13370881	18	1.9	19	94	5	65	22	5	2	69	1.22
13371226--13371262	19	1.9	19	88	0	56	29	8	16	45	1.76
13371773--13371856	5	16.6	5	70	20	59	14	7	2	76	1.10
13371794--13371833	14	2.7	15	84	11	55	12	10	0	77	0.99
13371874--13372448	59	9.7	59	82	7	612	46	7	12	33	1.69
13372226--13372356	66	2.0	68	89	3	203	49	7	11	31	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13374085--13374166	24	3.5	23	78	6	76	41	6	4	47	1.50
13374072--13374480	22	19.0	22	68	14	115	40	7	7	45	1.59
13374311--13374455	66	2.2	65	80	6	159	38	3	8	49	1.50
13374638--13374700	23	2.8	22	78	4	72	36	6	9	47	1.62
13374969--13375082	44	2.6	44	80	0	120	38	7	7	47	1.58
13375033--13375141	11	10.1	10	71	14	74	42	5	3	48	1.44
13374998--13375114	22	5.4	21	80	6	92	40	4	7	47	1.52
13374987--13375131	44	3.3	44	80	9	138	41	5	6	46	1.52
13374987--13375093	22	4.9	23	82	4	116	40	4	8	46	1.55
13374976--13375119	66	2.2	64	80	9	157	40	5	6	47	1.52
13375074--13375141	32	2.1	32	97	0	127	44	5	1	48	1.36
13375033--13375182	76	2.0	76	82	10	182	40	6	6	46	1.54
13375181--13375253	22	3.4	22	78	3	67	41	12	4	42	1.61
13375239--13375332	22	4.2	22	78	8	100	40	10	4	44	1.59
13375183--13375321	44	3.2	43	81	9	147	41	11	5	42	1.63
13375205--13375332	66	1.9	67	81	10	156	39	10	5	43	1.63
13375466--13375703	22	10.9	21	70	11	113	33	7	7	51	1.57
13375248--13375706	66	7.0	64	70	11	214	35	8	7	48	1.63
13375511--13375710	44	4.5	44	77	3	170	34	7	7	51	1.57
13375511--13375738	44	5.2	44	78	3	122	34	7	7	50	1.58
13375818--13375869	22	2.4	23	78	12	56	40	11	1	46	1.51
13376189--13376373	22	8.5	22	68	13	89	35	8	2	52	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13378858--13378906	16	3.1	17	72	19	52	36	0	4	59	1.17
13378897--13379181	153	1.9	154	91	2	475	47	5	5	41	1.50
13382627--13382680	20	2.8	18	71	13	54	16	1	18	62	1.41
13385115--13385144	12	2.5	12	94	0	51	30	6	0	63	1.20
13385325--13385623	100	3.0	99	83	4	388	42	10	8	38	1.70
13391726--13391765	21	2.0	20	90	5	62	35	25	10	30	1.88
13393440--13393735	96	3.0	98	83	8	345	43	10	8	37	1.69
13394327--13394371	24	1.9	24	86	4	65	11	4	35	48	1.59
13394466--13394531	28	2.3	27	82	12	71	16	1	36	45	1.57
13394473--13394556	39	2.2	39	86	4	116	16	1	36	45	1.56
13394518--13394550	12	2.8	12	86	13	50	15	0	39	45	1.46
13394581--13394688	21	5.2	20	76	15	94	22	0	34	42	1.60
13394574--13394684	20	5.2	20	76	14	80	22	0	34	42	1.60
13394549--13394669	45	2.5	46	78	14	120	19	0	35	43	1.57
13394730--13394802	20	3.6	21	72	18	73	17	1	34	46	1.57
13396444--13396790	143	2.4	143	78	10	327	37	12	14	34	1.84
13399686--13399765	37	2.2	35	80	8	97	46	13	8	31	1.74
13399824--13400215	45	8.7	45	78	5	371	46	11	8	33	1.70
13400058--13400108	25	2.1	25	92	3	86	56	3	5	33	1.42
13400140--13400216	21	3.5	21	76	10	73	48	14	3	33	1.62
13400265--13400762	247	2.0	247	98	0	951	33	13	16	36	1.87
13404425--13404477	26	2.1	26	82	6	65	49	7	1	41	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13404466--13404553	38	2.4	37	84	5	115	51	9	1	38	1.41
13404466--13404553	37	2.3	38	84	5	117	51	9	1	38	1.41
13404863--13405042	59	3.1	59	85	8	224	57	19	2	20	1.51
13405394--13405434	15	2.7	15	84	0	55	36	0	7	56	1.27
13405872--13405922	16	3.2	16	71	0	57	39	13	5	41	1.69
13405872--13405936	32	2.0	32	90	0	103	36	18	4	40	1.71
13407159--13407204	22	2.0	23	84	12	60	21	0	4	73	1.00
13413002--13413037	18	1.9	18	88	5	54	8	0	11	80	0.90
13415080--13415134	16	3.4	16	79	2	65	29	7	10	52	1.63
13415073--13415134	32	1.9	33	90	3	99	32	6	9	51	1.60
13415104--13415214	20	5.7	20	73	12	77	31	7	9	51	1.62
13415112--13415208	20	4.9	20	79	10	85	30	8	11	49	1.68
13415224--13415530	21	15.4	20	70	17	203	28	6	14	50	1.67
13415224--13415530	41	7.7	41	82	7	373	28	6	14	50	1.67
13415539--13415600	32	1.9	32	83	0	79	29	3	12	54	1.53
13415583--13415631	19	2.5	20	80	16	57	28	4	12	55	1.55
13422237--13422310	1	74.0	1	73	0	58	86	2	9	1	0.73
13422237--13422317	17	4.9	15	84	15	90	85	2	11	1	0.76
13422237--13422323	32	2.6	32	85	10	104	83	2	12	1	0.79
13422237--13422323	18	5.1	17	84	9	99	83	2	12	1	0.79
13422262--13422322	4	16.8	4	81	13	53	83	0	16	0	0.64
13422254--13422314	14	4.6	13	86	10	70	86	0	11	1	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13422262--13422323	14	4.6	14	86	7	67	83	0	16	0	0.64
13422910--13422957	24	2.0	24	88	8	71	54	4	25	16	1.60
13423730--13424104	43	8.9	43	78	5	388	29	13	17	39	1.88
13423730--13424104	42	8.9	42	78	5	362	29	13	17	39	1.88
13423730--13424115	85	4.6	85	80	4	413	29	13	17	39	1.88
13423879--13424121	82	3.0	81	83	7	235	30	11	19	38	1.88
13425024--13425146	20	6.7	20	69	25	74	30	6	12	50	1.65
13425023--13425086	32	2.0	32	84	0	83	31	6	10	51	1.62
13425113--13425177	20	3.2	20	88	0	94	30	9	9	50	1.65
13425134--13425189	20	2.5	24	77	22	84	30	8	8	51	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130