genome.fa.s556.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  87  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17143530--17143567	20	2.0	20	89	5	60	34	0	5	60	1.19
17143791--17143839	25	1.9	26	91	4	82	46	2	10	40	1.49
17147253--17147288	6	6.0	6	90	0	54	22	0	47	30	1.52
17147252--17147287	18	2.0	18	94	0	63	25	0	47	27	1.52
17147632--17147689	18	3.1	18	76	13	62	32	32	3	31	1.75
17147637--17147676	21	1.9	21	89	0	62	30	37	2	30	1.71
17150584--17150624	3	13.7	3	100	0	82	65	0	0	34	0.93
17154399--17154441	23	1.9	22	85	4	59	46	0	2	51	1.13
17154790--17154875	12	7.5	12	73	17	58	45	3	0	51	1.18
17154789--17154881	46	2.0	46	93	0	159	46	4	0	49	1.21
17154859--17154906	16	3.1	16	77	17	55	50	6	2	41	1.39
17157108--17157141	12	2.8	12	86	0	50	52	11	2	32	1.53
17157130--17157177	18	2.5	18	86	10	60	50	6	2	41	1.39
17157878--17158118	119	2.0	119	84	2	315	33	10	18	37	1.86
17158605--17158638	17	2.0	17	88	11	52	55	2	0	41	1.15
17159776--17159822	16	2.7	18	87	9	62	27	0	0	72	0.85
17159772--17159829	3	20.0	3	76	13	59	29	1	0	68	0.99
17159772--17159823	19	2.7	19	85	5	70	28	0	0	71	0.87
17161910--17162244	46	7.1	46	75	12	225	43	14	9	32	1.77
17162216--17162307	48	1.9	48	86	4	132	44	20	8	26	1.80
17162020--17162301	139	2.0	138	79	7	293	44	15	8	30	1.78
17163482--17163523	13	3.2	13	82	0	57	2	16	0	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17164796--17164847	23	2.2	24	86	6	72	36	1	7	53	1.41
17165695--17165738	16	2.9	16	86	6	56	61	0	0	38	0.96
17165693--17165740	23	2.0	24	88	4	71	58	0	0	41	0.98
17165822--17166050	115	2.0	114	99	0	449	30	32	12	25	1.92
17166043--17166087	2	22.5	2	95	0	81	51	2	0	46	1.13
17177129--17177204	31	2.5	31	86	0	116	28	3	44	22	1.70
17178486--17178631	64	2.3	64	79	2	170	37	15	9	37	1.80
17178859--17179006	64	2.3	63	78	12	151	31	12	11	45	1.77
17180538--17180591	14	3.7	15	74	13	51	70	1	18	9	1.23
17180662--17180701	21	1.9	21	84	0	53	42	2	5	50	1.37
17180740--17180811	9	7.7	9	74	9	63	80	0	12	6	0.89
17180738--17180822	18	4.5	17	73	22	64	81	0	10	8	0.88
17180761--17180822	23	2.8	23	79	15	69	80	0	9	9	0.90
17180907--17180958	22	2.5	20	73	14	52	55	1	0	42	1.10
17181234--17181279	21	2.1	22	84	4	58	39	0	0	60	0.97
17181363--17181402	20	2.0	20	95	0	71	57	0	25	17	1.40
17190597--17190637	20	2.0	22	85	9	59	36	0	0	63	0.95
17191137--17191164	1	28.0	1	100	0	56	0	0	0	100	0.00
17191578--17191621	22	2.0	22	100	0	88	45	27	4	22	1.72
17198434--17198458	12	2.1	12	100	0	50	32	0	0	68	0.90
17202945--17202980	2	18.0	2	94	0	63	50	2	0	47	1.15
17210026--17210174	76	2.0	76	82	2	183	20	6	18	55	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17211446--17211531	36	2.4	36	80	3	93	43	8	19	29	1.80
17211475--17211554	24	3.2	24	75	13	72	40	8	22	28	1.84
17211482--17211561	12	6.4	12	73	13	63	37	8	22	31	1.85
17211521--17211550	15	2.0	15	93	0	51	30	6	23	40	1.80
17213694--17213757	22	2.8	22	77	13	58	32	1	6	59	1.32
17213702--17213743	21	2.0	22	85	4	59	30	2	7	59	1.37
17214257--17214290	9	3.7	9	84	7	50	64	32	0	2	1.08
17215161--17215513	89	4.0	89	78	8	353	47	13	18	20	1.82
17226803--17226845	22	2.0	21	82	13	52	30	0	6	62	1.21
17226922--17227023	11	9.5	10	71	17	62	78	4	2	13	1.03
17226966--17227017	5	9.8	5	84	12	68	80	3	0	15	0.85
17226922--17227023	49	2.1	48	83	5	125	78	4	2	13	1.03
17226971--17227018	23	2.1	22	88	3	69	81	4	0	14	0.84
17226965--17227023	28	2.1	27	90	3	91	81	3	1	13	0.90
17227415--17227454	21	1.9	21	89	0	62	22	15	5	57	1.57
17227415--17227464	20	2.4	21	80	10	57	24	20	6	50	1.70
17227847--17227892	21	2.2	21	84	0	56	73	4	19	2	1.10
17227869--17227898	13	2.4	12	89	10	51	83	6	10	0	0.81
17240690--17240738	20	2.5	20	82	0	62	44	2	2	51	1.24
17245704--17245731	6	4.7	6	100	0	56	0	32	53	14	1.41
17246142--17246214	38	1.9	38	91	5	121	21	15	20	42	1.89
17246953--17247010	10	5.7	10	76	10	55	60	1	1	36	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17246984--17247064	34	2.4	35	79	6	103	64	1	1	33	1.10
17247222--17247264	21	2.0	22	86	13	63	32	6	0	60	1.23
17247590--17247691	18	5.7	18	78	16	106	40	2	0	56	1.14
17247539--17247691	36	4.3	34	76	14	112	34	2	2	60	1.25
17247597--17247691	36	2.6	36	85	6	120	41	3	0	55	1.15
17247569--17247733	9	18.2	9	69	9	86	41	2	1	54	1.21
17247704--17247734	10	3.0	10	95	4	53	38	3	0	58	1.15
17249360--17249408	25	2.0	24	84	11	64	79	2	6	12	0.99
17250861--17251018	40	3.9	40	82	7	176	39	16	9	34	1.81
17251071--17251168	44	2.2	43	76	3	97	33	17	12	36	1.87
17255332--17255396	29	2.2	30	88	2	96	20	0	13	66	1.25
17256314--17256410	10	9.2	11	70	14	62	14	3	5	77	1.07
17256313--17256392	11	6.4	12	73	21	51	13	1	5	80	0.95
17256322--17256380	17	3.6	16	75	22	59	15	0	6	77	0.96
17256308--17256398	5	17.8	5	72	17	53	13	3	4	79	1.01
17256313--17256400	21	4.2	20	75	16	81	13	2	4	79	0.98
17256348--17256400	8	6.5	8	78	10	54	13	3	1	81	0.92
17256348--17256407	21	3.0	20	85	4	75	13	5	3	78	1.04
17256510--17256576	21	3.2	21	75	6	57	31	4	10	53	1.55
17256564--17256624	23	2.7	23	92	0	95	39	3	4	52	1.39
17256575--17256637	23	3.0	20	73	15	63	38	6	6	49	1.54
17256883--17256958	37	2.0	37	82	7	91	44	10	10	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17257971--17258011	21	2.0	21	100	0	82	19	0	12	68	1.21
17261611--17261654	20	2.2	20	84	11	56	34	11	15	38	1.84
17261994--17262180	24	8.1	22	68	13	90	35	6	14	42	1.73
17262073--17262147	22	3.3	22	72	7	78	36	6	14	42	1.72
17261985--17262272	46	6.3	45	76	9	253	35	5	14	44	1.69
17262000--17262270	136	2.0	139	83	3	352	35	5	14	44	1.68
17262068--17262344	90	3.1	87	75	11	236	34	5	14	45	1.69
17262551--17262622	17	4.2	17	82	7	83	30	22	12	34	1.91
17262546--17262622	34	2.3	34	88	0	109	31	20	14	33	1.93
17262609--17262658	17	2.9	17	80	11	57	42	18	12	28	1.85
17262660--17262707	17	2.8	17	77	0	51	39	12	10	37	1.77
17262732--17262839	50	2.1	50	81	1	126	37	14	9	37	1.79
17263116--17263233	18	6.5	18	67	9	69	32	14	12	40	1.84
17263546--17263613	6	11.2	6	78	12	68	20	1	11	66	1.32
17263538--17263613	29	2.5	30	89	8	118	19	2	10	67	1.33
17263543--17263623	29	2.9	29	70	24	75	20	2	9	66	1.32
17263554--17263640	41	2.1	42	80	6	97	21	2	11	64	1.37
17264546--17264579	6	5.7	6	89	0	50	0	23	0	76	0.79
17264592--17264646	17	3.2	17	81	2	65	7	1	5	85	0.80
17264808--17264878	23	3.1	23	93	0	106	32	8	8	50	1.63
17265011--17265049	13	2.9	13	85	7	51	46	2	0	51	1.14
17273860--17273909	22	2.3	22	86	6	66	18	6	4	72	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17274257--17274294	3	12.7	3	100	0	76	68	0	0	31	0.90
17274886--17274914	9	3.2	9	100	0	58	10	0	0	89	0.48
17275365--17275412	22	2.3	22	89	7	73	22	2	0	75	0.91
17276960--17276989	2	15.5	2	93	6	53	50	0	0	50	1.00
17278198--17278230	17	2.0	17	94	5	59	3	12	0	84	0.72
17278342--17278394	16	3.5	17	71	26	55	39	0	0	60	0.97
17278332--17278424	6	16.0	6	69	14	52	45	0	0	54	0.99
17278410--17278475	19	3.7	18	78	11	64	30	4	0	65	1.13
17278410--17278478	6	11.5	6	76	11	70	30	4	0	65	1.12
17278521--17278576	11	4.6	12	80	12	53	42	1	10	44	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130