genome.fa.s556.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  57  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12265719--12274604	987	9.0	987	99	0	17403	30	19	17	33	1.95
12274252--12275251	371	2.7	371	89	0	1453	19	30	22	27	1.98
12278711--12278749	18	2.3	18	86	8	55	76	2	17	2	1.01
12283926--12284289	147	2.4	147	82	5	455	51	10	17	20	1.73
12285727--12285769	22	2.0	21	90	4	68	76	0	16	6	0.99
12285727--12285769	21	2.0	22	86	13	63	76	0	16	6	0.99
12286208--12286264	21	2.6	22	91	2	89	29	17	22	29	1.97
12286495--12286623	49	2.6	48	77	7	134	31	12	17	38	1.87
12286498--12286623	48	2.6	50	77	6	141	30	12	17	39	1.87
12286772--12286823	8	6.9	8	86	8	74	78	7	1	11	1.02
12286770--12286825	29	1.9	29	100	0	112	80	7	1	10	0.97
12287060--12287158	3	33.0	3	95	0	180	31	0	2	66	1.03
12291776--12291822	3	15.3	3	86	4	67	72	0	0	27	0.85
12292772--12292809	3	12.7	3	100	0	76	65	0	0	34	0.93
12293552--12293649	47	2.2	45	85	10	137	25	12	9	53	1.68
12295130--12295716	43	13.5	43	80	2	537	41	14	15	28	1.86
12295129--12295719	130	4.5	130	81	3	614	41	14	15	28	1.86
12295130--12295716	173	3.4	171	82	4	678	41	14	15	28	1.86
12296860--12297022	81	2.0	81	100	0	326	28	25	11	34	1.90
12300146--12300215	18	3.8	18	76	12	70	80	1	12	5	0.96
12300148--12300218	13	5.4	12	75	20	54	81	1	12	4	0.90
12300148--12300210	26	2.4	27	81	2	74	82	1	11	4	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12302110--12302183	1	74.0	1	79	0	58	86	12	1	0	0.63
12302100--12302166	6	11.3	6	76	17	61	83	16	0	0	0.64
12302103--12302183	15	5.3	15	85	2	99	85	13	1	0	0.67
12302100--12302180	38	2.0	40	88	11	123	83	14	1	0	0.70
12302103--12302183	8	10.6	8	75	18	75	85	13	1	0	0.67
12303996--12304041	3	15.0	3	95	4	83	67	0	0	32	0.91
12303994--12304040	22	2.1	22	100	0	94	68	0	0	31	0.90
12304159--12304203	14	3.3	13	85	11	63	77	0	0	22	0.76
12304161--12304200	20	2.0	21	90	5	64	77	0	0	22	0.77
12306523--12306624	16	6.1	17	72	11	61	30	0	6	62	1.21
12307023--12307076	25	2.2	24	86	6	72	37	5	16	40	1.72
12307610--12307846	59	3.9	56	81	13	244	45	8	13	32	1.73
12312407--12312496	39	2.3	39	80	0	99	46	15	10	27	1.78
12314142--12314187	17	3.0	16	79	17	53	8	15	0	76	1.02
12314162--12314194	16	2.1	16	94	0	57	0	15	0	84	0.61
12322828--12322881	23	2.3	23	81	12	65	59	11	0	29	1.32
12322948--12323070	24	5.1	24	71	14	92	56	8	7	27	1.55
12323162--12323188	14	1.9	14	100	0	54	74	7	3	14	1.18
12323932--12324001	22	3.3	22	88	9	94	44	17	8	30	1.78
12324098--12324258	19	8.8	19	75	13	94	45	13	14	25	1.82
12324137--12324263	17	7.1	17	72	15	87	48	14	12	25	1.79
12324118--12324277	36	4.4	36	75	7	144	47	12	14	25	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12324118--12324263	72	2.0	72	84	5	188	47	13	13	25	1.80
12324424--12324489	24	2.9	23	67	13	55	46	9	10	33	1.70
12324304--12324589	46	6.4	46	73	6	151	42	11	10	35	1.76
12324304--12324634	179	1.8	179	79	3	380	42	11	10	35	1.74
12324566--12324659	21	4.4	21	72	10	64	45	13	5	35	1.67
12324579--12324697	44	2.6	45	81	6	125	47	12	6	32	1.67
12324613--12324666	21	2.4	22	78	9	56	50	12	5	31	1.64
12324618--12324713	46	2.1	46	82	7	115	51	14	6	28	1.67
12324868--12324956	41	2.1	42	80	10	103	42	19	10	28	1.83
12324998--12325049	22	2.4	22	87	9	79	26	13	26	32	1.94
12325219--12325308	32	2.8	33	75	1	101	32	21	14	32	1.93
12326740--12326777	17	2.2	17	90	0	58	7	18	0	73	1.06
12327944--12328427	138	3.5	138	82	3	517	50	12	10	26	1.72
12329084--12329223	43	3.1	44	79	5	147	57	10	7	24	1.59
12329083--12329207	43	2.9	44	82	2	153	56	11	8	24	1.62
12329799--12329835	13	2.8	14	84	12	51	56	10	5	27	1.55
12329903--12329958	24	2.3	24	82	14	71	60	12	3	23	1.47
12329917--12329980	24	2.6	25	80	5	67	60	14	3	21	1.47
12330055--12330094	14	2.9	14	88	3	55	80	7	2	10	1.00
12330064--12330121	18	3.2	19	77	20	61	79	5	5	10	1.05
12331378--12331889	200	2.5	200	80	4	559	37	15	20	26	1.92
12337930--12337961	12	2.7	12	90	0	55	90	0	9	0	0.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12339039--12339115	35	2.2	35	82	15	97	23	23	9	44	1.82
12339051--12339454	35	11.7	35	67	6	162	22	21	9	46	1.79
12339464--12339551	35	2.5	35	76	10	99	29	20	4	45	1.71
12339512--12339703	70	2.8	70	73	5	183	29	21	6	42	1.77
12340331--12340377	20	2.4	20	82	3	60	51	12	8	27	1.69
12341290--12341322	10	3.3	10	91	0	57	0	21	0	78	0.75
12341449--12341513	23	2.8	23	95	0	112	46	9	13	30	1.75
12361457--12361498	16	2.6	16	84	0	66	30	16	16	35	1.92
12365785--12365818	17	2.1	17	88	5	52	29	2	11	55	1.50
12372580--12372634	19	2.8	20	81	15	71	18	3	38	40	1.68
12372624--12372691	29	2.3	30	82	2	84	11	4	41	42	1.61
12372622--12372722	30	3.4	29	81	8	105	13	2	41	41	1.60
12372700--12372750	12	4.1	12	74	18	50	11	0	43	45	1.40
12372719--12372786	19	3.6	19	78	9	68	13	0	38	48	1.42
12372878--12372986	49	2.2	49	78	4	139	53	7	13	25	1.66
12374776--12374850	31	2.5	30	77	10	73	40	17	10	32	1.84
12376740--12377052	50	6.1	51	86	5	382	44	12	13	29	1.81
12377501--12377545	18	2.5	19	76	20	51	22	33	0	44	1.53
12377798--12377919	33	3.8	33	75	8	99	31	19	16	32	1.94
12377993--12378074	31	2.6	31	75	12	80	28	17	15	39	1.90
12382247--12382293	24	1.9	25	83	12	62	53	2	8	36	1.44
12382042--12382311	136	2.0	135	81	3	319	38	9	15	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12384527--12384567	21	2.0	21	85	9	57	9	0	7	82	0.83
12384861--12384950	46	1.9	47	84	10	123	3	18	1	76	0.98
12384862--12384952	18	5.1	18	78	15	82	3	19	1	75	1.00
12384864--12384940	3	27.7	3	75	17	51	2	19	1	76	0.97
12384862--12384968	46	2.3	46	80	13	112	3	20	0	74	1.02
12384918--12384975	19	3.0	21	80	14	63	5	25	0	68	1.10
12390493--12390549	30	2.0	29	82	6	71	26	5	5	63	1.37
12392852--12392880	13	2.1	14	93	6	51	68	0	3	27	1.05
12393273--12393336	26	2.5	26	82	7	76	53	4	1	40	1.31
12393506--12393533	1	28.0	1	100	0	56	100	0	0	0	0.00
12395687--12395757	12	5.7	12	75	8	61	36	0	0	63	0.95
12395712--12395755	16	2.6	17	82	7	54	34	0	0	65	0.93
12396984--12397031	2	25.5	2	81	12	57	50	2	0	47	1.12
12398386--12398430	20	2.3	20	81	7	58	33	2	0	64	1.06
12399689--12399727	10	3.8	10	89	3	60	7	2	2	87	0.73
12399690--12399786	11	8.2	11	71	17	52	13	1	8	77	1.04
12399714--12399806	25	3.7	24	84	11	123	15	1	11	72	1.19
12399714--12399794	17	4.6	17	73	21	69	16	1	11	71	1.20
12399689--12399762	10	7.5	10	75	17	57	12	1	8	78	1.02
12400128--12400169	20	2.2	19	86	4	57	0	30	2	66	1.04
12401248--12401273	2	13.0	2	100	0	52	50	0	0	50	1.00
12402016--12402062	17	2.7	17	83	9	51	34	4	2	59	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12402084--12402112	3	10.0	3	92	7	51	34	0	0	65	0.93
12403008--12403067	28	2.1	29	87	3	86	16	6	5	71	1.25
12403811--12403880	29	2.4	29	95	0	131	50	10	17	22	1.76
12406439--12406530	42	2.2	41	84	1	112	55	11	18	14	1.69
12406523--12406560	20	1.9	19	89	5	58	89	2	5	2	0.64
12408146--12408204	23	2.6	21	80	15	64	32	1	5	61	1.28
12413008--12413344	59	5.5	59	72	16	240	36	11	7	44	1.69
12413008--12413546	248	2.2	247	83	7	668	38	10	6	43	1.66
12413008--12413548	121	4.4	126	80	9	503	38	10	6	43	1.66
12413571--12413628	15	3.9	15	71	13	57	74	0	5	20	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130