genome.fa.s556.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  88  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17278543--17278585	14	3.2	14	87	6	63	44	0	13	41	1.44
17282495--17282530	16	2.2	17	90	5	56	77	5	13	2	1.05
17284810--17284838	11	2.6	11	100	0	58	37	20	0	41	1.53
17289139--17289195	28	2.0	28	93	0	96	42	14	17	26	1.87
17290481--17290533	2	26.5	2	83	14	65	50	3	1	43	1.30
17295740--17295796	13	4.5	13	91	6	82	57	14	0	28	1.37
17296210--17296248	18	2.2	18	85	0	51	41	10	2	46	1.51
17296900--17296952	26	2.0	27	88	3	81	33	0	0	66	0.92
17296901--17296950	15	3.1	16	85	11	66	34	0	0	66	0.92
17297092--17297129	15	2.5	15	87	8	51	2	31	7	57	1.41
17298449--17298504	25	2.2	25	93	0	94	53	5	1	39	1.34
17298672--17298696	13	1.9	13	100	0	50	40	12	8	40	1.72
17298970--17299030	22	2.7	23	74	5	70	37	9	16	36	1.82
17300409--17300574	83	2.0	83	89	0	251	34	13	10	40	1.79
17301051--17301117	4	15.8	4	79	17	73	19	2	0	77	0.89
17301067--17301142	22	3.5	22	79	12	70	14	9	0	76	1.02
17301051--17301141	27	3.4	27	79	11	66	16	6	0	76	0.98
17302078--17302130	25	2.2	25	83	10	65	50	13	3	32	1.59
17305104--17305180	26	3.4	23	72	19	63	71	3	1	23	1.10
17305106--17305188	15	5.6	14	75	15	53	72	3	2	21	1.12
17306066--17306115	25	2.1	24	82	14	59	44	22	6	28	1.76
17306218--17306274	16	3.3	16	75	17	60	50	12	7	29	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17306175--17306281	18	5.8	19	71	20	77	50	11	5	32	1.61
17306567--17306630	22	3.0	20	71	10	56	60	12	4	21	1.50
17306583--17306628	23	2.0	23	83	4	58	63	13	4	19	1.46
17306557--17306733	55	3.2	55	87	0	255	55	12	5	26	1.58
17306791--17306853	32	2.0	32	87	0	90	55	7	6	30	1.54
17306660--17306880	83	2.6	83	85	7	302	53	11	5	28	1.60
17306791--17306868	32	2.5	32	83	4	88	56	7	5	30	1.49
17306876--17306995	24	5.0	24	71	13	95	59	9	3	28	1.44
17307580--17307624	23	2.0	23	86	4	65	15	8	0	75	1.03
17307948--17308188	43	5.6	43	78	8	240	39	18	13	28	1.89
17307944--17308132	85	2.2	86	84	6	240	38	20	13	28	1.90
17307981--17308188	85	2.4	84	78	11	217	37	18	14	28	1.90
17308281--17308365	44	1.9	44	83	4	109	35	18	17	28	1.94
17308303--17308431	66	2.0	66	84	0	168	31	17	21	29	1.97
17308269--17308420	22	6.9	22	70	5	83	32	18	19	30	1.95
17308304--17308475	22	7.8	21	71	5	74	32	17	19	30	1.95
17308869--17308922	18	3.2	18	67	20	53	38	9	25	25	1.86
17308868--17308934	32	2.1	32	88	5	100	41	8	22	26	1.83
17309007--17309045	18	2.2	18	86	9	53	38	20	17	23	1.93
17313529--17313578	25	2.1	24	85	14	68	46	22	4	28	1.70
17313639--17313743	18	5.7	18	75	16	92	48	12	6	32	1.67
17313998--17314068	33	2.2	32	87	7	99	54	12	7	25	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17314030--17314093	20	3.0	20	76	10	65	60	10	4	23	1.48
17314030--17314091	23	2.9	23	81	11	69	61	11	4	22	1.48
17313992--17314194	55	3.7	55	85	2	241	53	12	5	28	1.61
17314117--17314335	83	2.6	82	84	7	287	50	11	7	29	1.67
17314251--17314332	32	2.6	32	82	3	96	54	8	6	30	1.55
17314117--17314335	84	2.6	83	85	4	287	50	11	7	29	1.67
17314346--17314383	20	1.9	20	88	0	58	50	10	5	34	1.59
17314404--17314506	24	4.5	24	71	20	94	57	9	0	32	1.38
17314392--17314506	47	2.5	46	83	8	146	56	10	1	31	1.43
17314456--17314497	21	2.0	20	90	4	66	57	11	0	30	1.35
17315478--17315656	43	4.2	42	80	7	175	38	21	9	30	1.85
17315738--17315785	22	2.2	22	84	0	60	25	25	20	29	1.99
17315779--17316012	22	10.6	22	70	7	143	29	14	24	31	1.95
17315758--17315852	44	2.2	44	82	3	111	27	16	25	30	1.97
17315779--17315941	66	2.5	65	78	7	168	28	15	25	30	1.96
17316268--17316303	18	1.9	19	88	5	56	38	11	25	25	1.88
17316351--17316408	18	3.2	18	78	4	64	39	20	15	24	1.91
17316405--17316480	18	4.2	18	72	5	55	48	17	10	23	1.78
17316544--17316624	36	2.2	36	86	4	110	45	14	7	32	1.73
17316560--17316648	36	2.5	36	88	1	126	42	17	7	31	1.78
17318189--17318253	7	9.7	7	85	6	82	7	13	0	78	0.95
17318196--17318261	14	4.7	14	84	3	71	6	13	0	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17318202--17318261	21	2.9	21	82	5	77	6	13	0	80	0.91
17318183--17318267	7	12.4	7	79	14	63	5	14	0	80	0.90
17319441--17319826	123	3.1	122	82	6	418	48	15	9	27	1.75
17319744--17320055	139	2.3	135	84	5	382	49	12	11	26	1.75
17321421--17321551	18	6.9	18	68	19	72	48	12	5	33	1.63
17321649--17321710	24	2.6	24	82	7	81	54	9	1	33	1.43
17321871--17321928	23	2.7	23	79	12	70	51	8	8	31	1.63
17321804--17321976	55	3.1	55	81	1	204	52	10	6	30	1.61
17321963--17322007	23	1.9	24	82	13	58	53	11	6	28	1.61
17322032--17322092	31	2.0	31	86	0	86	49	16	8	26	1.73
17322096--17322137	20	2.1	20	86	0	57	52	9	4	33	1.55
17321902--17322126	83	2.7	83	87	4	292	53	10	6	29	1.61
17321866--17322157	83	3.5	84	79	10	280	52	10	7	29	1.63
17322142--17322279	24	6.0	23	77	10	122	55	12	2	28	1.51
17326453--17326648	100	2.0	100	87	0	284	37	15	12	34	1.85
17336237--17336407	64	2.7	62	76	10	164	19	14	14	51	1.76
17336237--17336472	65	3.7	64	79	6	219	20	16	13	48	1.80
17337817--17337864	19	2.6	18	84	15	62	12	10	4	72	1.24
17337853--17337903	18	2.7	19	73	11	52	19	3	1	74	1.07
17337830--17337882	25	2.1	25	85	0	70	18	7	3	69	1.28
17344495--17344562	8	8.9	7	78	13	64	19	1	2	76	0.99
17344486--17344563	16	4.9	15	78	6	75	17	1	3	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17344501--17344559	4	15.2	4	73	19	54	22	1	1	74	1.00
17345451--17345484	16	2.1	16	89	10	52	61	5	0	32	1.20
17347073--17347404	165	2.0	164	81	5	393	39	25	9	26	1.85
17349971--17350000	11	2.7	11	89	0	51	86	0	13	0	0.57
17351790--17352022	69	3.4	68	80	6	247	33	22	12	31	1.91
17353619--17353673	4	14.0	4	88	3	85	21	0	1	76	0.88
17353841--17353895	24	2.2	25	80	3	67	23	3	1	70	1.12
17353868--17353915	17	2.9	16	69	6	51	18	4	4	72	1.17
17354748--17354785	8	4.6	8	87	6	58	5	0	7	86	0.69
17355032--17355075	3	14.7	3	100	0	88	65	0	0	34	0.93
17359013--17359078	21	3.1	21	82	0	87	19	3	39	37	1.67
17359623--17359689	18	3.6	18	88	9	91	70	0	5	23	1.09
17359635--17359687	12	4.5	11	83	9	61	73	0	3	22	0.99
17359637--17359687	6	8.3	6	77	12	50	74	0	3	21	0.98
17359613--17359699	38	2.3	38	78	15	99	70	3	4	21	1.21
17359868--17359901	9	3.8	9	88	0	50	14	5	0	79	0.91
17360299--17360344	24	1.9	24	95	0	83	36	15	19	28	1.92
17360810--17360862	19	2.7	19	72	16	54	13	0	37	49	1.42
17361316--17361357	13	3.1	14	76	10	52	73	0	19	7	1.05
17363301--17363662	142	2.5	143	77	9	314	43	12	11	33	1.78
17365965--17366140	79	2.2	80	89	2	273	48	5	11	34	1.63
17372150--17372190	20	2.0	20	85	0	55	39	4	21	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17377556--17377593	20	1.9	20	84	10	51	50	2	0	47	1.15
17380316--17380350	18	1.9	18	100	0	70	51	5	20	22	1.68
17381920--17381946	14	1.9	14	100	0	54	25	14	0	59	1.36
17383855--17383934	29	2.7	30	88	5	119	35	16	0	48	1.46
17387370--17387428	9	6.6	9	81	13	59	8	6	0	84	0.77
17387387--17387427	8	4.9	8	88	11	64	9	0	0	90	0.46
17387370--17387427	26	2.2	26	87	6	82	8	5	0	86	0.71
17387370--17387427	18	3.3	18	90	2	82	8	5	0	86	0.71
17387551--17387599	17	2.8	17	84	3	62	4	30	0	65	1.11
17387645--17387694	13	3.8	13	80	20	59	2	16	0	82	0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130