genome.fa.s556.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  128  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26166812--26166862	25	2.0	25	85	7	68	64	0	0	35	0.94
26189498--26189592	4	24.0	4	70	13	54	64	1	0	34	1.01
26189501--26189570	23	3.0	23	85	8	88	62	1	0	35	1.04
26189504--26189589	25	3.5	24	80	9	77	63	1	0	34	1.02
26189498--26189598	14	7.7	14	73	17	83	63	1	0	34	1.06
26201648--26201684	18	2.0	19	89	5	58	32	0	0	67	0.91
26206964--26207038	37	2.0	37	97	0	141	33	10	24	32	1.89
26210527--26210588	19	3.2	20	80	15	76	38	0	1	59	1.07
26211274--26211334	32	1.9	32	89	0	95	60	1	3	34	1.23
26228247--26228273	12	2.2	12	100	0	54	66	0	7	25	1.17
26230352--26230421	36	1.9	36	82	0	86	24	22	21	31	1.98
26232590--26232923	165	2.0	166	93	0	571	33	17	10	38	1.84
26235701--26235728	14	2.0	14	100	0	56	0	7	0	92	0.37
26235852--26235912	29	2.1	29	90	0	95	31	13	11	44	1.79
26236047--26236098	3	17.3	3	100	0	104	67	0	0	32	0.91
26243020--26243056	2	18.5	2	100	0	74	0	51	0	48	1.00
26253281--26253326	22	2.1	22	91	0	74	54	8	6	30	1.56
26254986--26255020	2	17.5	2	100	0	70	48	0	0	51	1.00
26256910--26256945	4	9.2	4	93	6	65	52	0	0	47	1.00
26257487--26257558	24	3.0	24	75	6	65	54	0	1	44	1.08
26282744--26282778	2	17.5	2	93	0	61	0	0	45	54	0.99
26282778--26282802	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26283815--26283852	5	7.6	5	87	0	58	21	39	36	2	1.67
26284065--26284286	59	3.7	58	82	10	259	46	6	13	33	1.69
26288130--26288169	6	7.0	6	78	21	50	82	0	17	0	0.67
26288115--26288170	17	3.3	17	82	7	60	80	0	16	3	0.85
26288113--26288196	16	5.2	16	74	8	64	79	0	14	5	0.90
26288165--26288194	8	3.8	8	95	0	51	86	0	3	10	0.67
26289408--26290144	81	9.0	80	88	8	935	23	18	21	37	1.94
26289408--26290144	42	18.0	41	86	9	976	23	18	21	37	1.94
26289408--26290144	123	6.0	121	89	7	1028	23	18	21	37	1.94
26290151--26290268	1	118.0	1	69	0	74	84	9	1	4	0.81
26290152--26290268	12	9.7	12	78	9	103	84	9	1	4	0.82
26290154--26290267	24	4.7	24	79	14	119	84	9	1	4	0.83
26290154--26290269	43	2.8	42	83	12	141	83	9	2	4	0.87
26290348--26290398	14	3.6	14	84	10	68	84	3	9	1	0.83
26290350--26290405	16	3.6	16	84	13	57	82	3	12	1	0.88
26290477--26290512	10	3.7	10	88	3	56	91	8	0	0	0.41
26290480--26290514	12	2.9	12	91	0	61	91	8	0	0	0.42
26290784--26290842	23	2.6	23	83	0	73	23	10	1	64	1.34
26291791--26291820	15	1.9	16	93	6	53	73	3	0	23	0.98
26291797--26292045	60	4.1	59	83	6	295	47	8	12	30	1.71
26291803--26292033	59	3.8	60	86	6	306	45	8	13	32	1.74
26296391--26296433	11	3.7	11	76	11	50	58	0	4	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26296392--26296438	24	2.0	24	83	8	60	57	0	4	38	1.18
26296422--26296473	15	3.4	14	75	19	50	63	0	0	36	0.95
26296529--26296575	24	2.0	23	87	4	67	51	0	0	48	1.00
26315810--26315843	17	2.1	17	88	5	52	44	0	2	52	1.16
26317909--26317935	14	1.9	14	100	0	54	29	33	7	29	1.85
26319113--26319137	2	12.5	2	100	0	50	0	48	0	52	1.00
26319137--26319170	2	17.0	2	100	0	68	50	0	0	50	1.00
26326538--26327909	370	3.7	371	88	2	1918	18	31	23	25	1.97
26327912--26328909	370	2.7	370	89	1	1439	19	30	23	26	1.98
26332166--26332326	59	2.7	59	77	7	173	34	11	6	47	1.65
26332214--26332422	103	2.0	103	82	5	253	36	11	4	47	1.60
26332362--26332392	16	1.9	16	93	0	53	41	0	0	58	0.98
26332311--26332425	56	2.0	59	86	5	164	39	8	2	49	1.48
26332490--26332543	19	2.8	20	78	18	60	74	12	1	11	1.16
26333221--26333270	20	2.5	21	83	6	68	16	6	0	78	0.95
26333462--26333799	44	7.7	44	76	10	248	45	20	10	22	1.82
26333454--26333799	90	4.0	87	82	8	350	44	21	10	22	1.83
26334467--26334516	22	2.3	23	86	6	68	36	18	12	34	1.87
26339739--26339855	59	2.0	58	83	9	150	41	9	2	47	1.50
26339927--26339995	21	3.2	22	79	20	76	75	13	2	8	1.15
26340236--26340282	19	2.6	18	83	10	60	2	36	0	61	1.08
26340643--26340689	9	5.2	9	82	10	51	12	8	0	78	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26342736--26342800	32	2.0	32	100	0	130	32	18	18	30	1.95
26365084--26365110	8	3.4	8	100	0	54	37	25	0	37	1.57
26369127--26369166	18	2.2	18	100	0	80	25	5	27	42	1.75
26370467--26370655	64	3.0	62	72	11	163	46	8	8	35	1.67
26370611--26370728	63	1.9	62	81	6	141	33	6	10	49	1.63
26370607--26370894	143	2.0	144	81	9	340	37	5	10	46	1.61
26371025--26371095	29	2.4	29	84	9	83	53	1	0	45	1.09
26375944--26375996	22	2.5	22	76	14	65	33	0	7	58	1.26
26376881--26376905	5	5.0	5	100	0	50	80	0	0	20	0.72
26381225--26381257	7	4.7	7	96	0	57	33	30	0	36	1.58
26382163--26382202	16	2.6	16	88	4	55	57	2	0	40	1.12
26388050--26388087	19	2.0	19	94	0	67	28	21	26	23	1.99
26388051--26388094	19	2.4	18	88	7	63	29	20	27	22	1.99
26388383--26388431	24	2.0	25	88	4	73	36	22	4	36	1.73
26391412--26391470	30	2.0	30	96	0	109	32	10	22	35	1.87
26396066--26396107	18	2.5	17	81	11	50	28	4	7	59	1.44
26396164--26396209	16	3.2	14	80	14	58	17	0	2	80	0.81
26397088--26397133	24	1.9	24	82	8	58	76	6	2	15	1.09
26397976--26398014	15	2.4	17	87	8	55	10	15	0	74	1.07
26399419--26399481	23	2.7	23	87	0	81	47	7	3	41	1.48
26399419--26399544	23	5.4	23	75	11	80	53	5	1	39	1.34
26399489--26399559	18	3.7	20	74	12	60	59	5	0	35	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26399684--26399903	112	2.0	111	92	0	368	25	9	27	38	1.86
26399853--26399980	66	1.9	66	88	0	193	29	9	21	39	1.84
26401612--26401671	31	1.9	31	90	6	95	38	15	1	45	1.56
26401998--26402035	14	2.6	14	84	15	51	68	2	0	28	1.03
26402094--26402164	31	2.3	31	80	7	83	45	9	4	40	1.57
26403008--26403037	2	15.5	2	93	6	53	53	0	0	46	1.00
26405968--26406020	26	2.0	26	92	0	88	22	13	1	62	1.40
26406301--26409153	371	7.7	369	84	4	3280	27	21	30	21	1.98
26406301--26409153	735	3.8	739	85	3	3682	27	21	30	21	1.98
26413446--26413484	15	2.5	15	84	16	53	71	0	0	28	0.86
26414767--26414818	25	2.1	25	100	0	104	28	11	28	30	1.92
26421693--26421726	2	17.0	2	93	0	59	0	47	0	52	1.00
26431229--26431279	19	2.4	22	75	12	54	52	3	0	43	1.19
26431345--26431407	22	2.9	22	80	13	60	52	3	1	42	1.27
26431568--26431792	3	75.0	3	77	14	198	30	1	4	62	1.26
26432244--26432285	19	2.1	21	86	8	61	21	0	19	59	1.38
26433506--26433565	11	5.9	11	71	25	60	61	0	0	38	0.96
26433507--26433693	29	6.5	29	73	10	152	55	1	3	39	1.28
26433540--26433680	57	2.4	56	80	12	153	53	2	4	39	1.35
26433709--26433807	22	4.4	23	73	16	66	53	1	2	43	1.19
26433741--26433785	18	2.5	18	85	0	63	60	2	0	37	1.09
26433801--26433894	22	4.4	22	67	26	67	54	3	3	39	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26433914--26434052	10	13.4	10	67	13	66	43	1	5	50	1.33
26433912--26434397	21	22.8	21	68	15	182	46	2	4	46	1.35
26434022--26434061	20	2.0	20	90	5	62	50	0	5	45	1.23
26434262--26434312	22	2.4	21	83	3	66	47	1	3	47	1.32
26434325--26434384	31	2.0	31	84	15	81	50	1	1	46	1.21
26434329--26434386	16	3.7	16	69	19	50	50	1	1	46	1.22
26436044--26436094	21	2.4	21	76	0	57	25	9	13	50	1.72
26436218--26436247	13	2.3	13	94	0	51	36	3	0	60	1.14
26437637--26437706	26	2.7	26	84	0	86	25	32	12	28	1.93
26437806--26437889	3	28.0	3	90	0	132	29	1	1	67	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130