genome.fa.s556.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  99  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19288698--19288733	18	2.1	18	89	5	56	66	19	8	5	1.38
19290779--19290835	24	2.3	25	81	6	71	35	10	8	45	1.70
19290784--19290855	24	3.0	24	76	11	67	41	12	6	38	1.70
19290959--19291028	21	3.4	21	71	15	56	40	10	11	38	1.75
19290935--19291036	40	2.5	40	79	6	105	43	11	9	35	1.75
19290935--19291051	40	2.8	40	77	5	99	41	11	10	36	1.75
19291362--19291447	38	2.3	38	89	0	136	50	3	11	34	1.56
19293742--19293785	22	2.0	23	90	4	72	81	2	11	4	0.92
19294301--19294341	13	3.2	13	89	6	57	63	9	0	26	1.25
19294419--19294486	6	11.5	6	73	13	52	77	2	2	16	1.00
19294429--19294487	26	2.3	26	79	5	66	79	3	3	13	0.98
19294878--19294928	26	1.9	26	84	4	66	52	3	7	35	1.49
19297595--19297994	145	2.7	145	82	6	409	43	8	11	36	1.71
19301350--19301376	12	2.2	12	100	0	54	59	0	0	40	0.98
19301344--19301415	29	2.4	31	79	9	85	52	0	2	44	1.15
19301392--19301429	20	1.9	20	84	10	51	47	0	5	47	1.24
19303044--19303071	14	2.0	14	100	0	56	7	0	7	85	0.73
19303256--19303301	22	2.2	22	84	7	60	54	2	6	36	1.39
19303448--19303528	30	2.7	29	73	7	81	33	2	13	50	1.55
19304061--19304130	36	1.9	36	94	0	122	35	4	34	25	1.76
19304190--19304240	25	2.0	25	92	0	84	37	19	7	35	1.81
19321187--19321259	38	2.0	35	81	7	83	34	5	0	60	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19321716--19321921	34	6.2	34	67	20	98	41	7	5	45	1.57
19321866--19321931	16	4.1	16	72	11	55	46	6	1	45	1.37
19326688--19326775	31	2.8	31	98	0	167	20	15	18	45	1.85
19327347--19327372	2	13.0	2	100	0	52	50	0	0	50	1.00
19327911--19327957	21	2.2	21	84	0	58	29	10	4	55	1.53
19328193--19328240	25	1.9	25	83	8	62	45	2	4	47	1.33
19328375--19328454	38	2.2	35	80	10	90	72	2	21	3	1.12
19329044--19329095	22	2.4	21	84	9	68	26	13	3	55	1.55
19331225--19331273	19	2.4	21	77	19	59	77	4	12	6	1.09
19333112--19333328	104	2.1	105	92	2	355	32	15	12	39	1.86
19333990--19334032	1	43.0	1	80	0	50	90	2	6	0	0.52
19333989--19334032	19	2.3	19	88	0	61	88	4	6	0	0.62
19335479--19335538	30	2.0	30	93	0	102	36	13	20	30	1.90
19337575--19337707	39	3.4	38	77	8	135	39	7	12	40	1.71
19337988--19338053	6	11.2	6	78	3	71	27	0	6	66	1.15
19339365--19339425	18	3.4	18	83	0	77	13	1	8	77	1.07
19340381--19340454	20	3.8	20	85	7	98	37	1	8	52	1.40
19340422--19340563	44	3.3	44	90	5	236	35	0	7	57	1.31
19340399--19340582	41	4.5	40	84	11	223	34	0	8	56	1.33
19340422--19340582	85	1.9	84	93	1	277	34	0	7	57	1.31
19348811--19348964	76	2.0	77	97	1	292	38	16	18	25	1.91
19353549--19353684	59	2.3	58	81	3	166	24	1	13	60	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19353644--19353699	27	2.2	27	84	9	73	17	0	17	64	1.30
19353644--19353699	25	2.2	27	87	9	82	17	0	17	64	1.30
19353754--19353797	22	2.0	22	91	4	72	18	0	15	65	1.27
19353938--19353976	19	2.0	21	85	10	55	58	0	2	38	1.12
19353999--19354050	23	2.3	23	83	6	61	32	0	15	51	1.43
19354110--19354142	16	2.1	16	88	5	50	75	0	0	24	0.80
19361022--19361064	19	2.3	19	87	0	59	32	2	13	51	1.54
19368989--19369053	30	2.2	30	83	5	78	50	4	18	26	1.66
19379081--19379140	20	2.9	21	75	12	52	15	15	8	61	1.55
19387331--19387382	23	2.3	23	80	6	61	59	1	7	30	1.36
19390821--19390849	2	14.5	2	100	0	58	51	0	0	48	1.00
19394613--19394641	2	14.5	2	100	0	58	48	0	0	51	1.00
19395027--19395059	11	2.8	12	90	9	59	27	12	27	33	1.92
19397759--19397799	11	3.9	11	78	12	50	24	4	4	65	1.32
19400219--19400243	12	2.1	12	100	0	50	72	0	28	0	0.86
19401390--19401418	2	14.5	2	100	0	58	48	0	0	51	1.00
19401525--19401575	14	3.7	14	78	5	59	39	0	0	60	0.97
19401647--19401680	2	17.0	2	100	0	68	50	0	0	50	1.00
19402920--19402961	23	1.9	22	90	9	68	54	2	4	38	1.34
19402948--19402999	19	2.7	19	77	8	52	48	1	1	48	1.24
19405660--19405718	16	3.8	16	73	15	52	40	1	3	54	1.27
19413953--19413984	15	2.1	15	100	0	64	46	34	12	6	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19414690--19414740	27	1.9	26	88	4	75	56	0	0	43	0.99
19414688--19414746	27	2.2	26	78	3	73	55	0	0	44	0.99
19415138--19415231	42	2.1	48	84	11	128	50	0	3	46	1.17
19415296--19415624	171	1.9	170	81	5	396	45	6	5	41	1.54
19418869--19418893	2	12.5	2	100	0	50	52	0	0	48	1.00
19420722--19420757	16	2.2	17	90	5	56	19	0	2	77	0.88
19421241--19421284	21	2.0	22	83	12	56	40	4	6	47	1.50
19421299--19421348	15	3.1	16	80	11	57	42	6	2	50	1.38
19421329--19421511	87	2.2	85	83	9	225	45	4	8	40	1.55
19421373--19421705	88	3.7	88	76	11	232	46	5	7	40	1.56
19421564--19421839	152	1.8	154	82	7	366	44	5	5	44	1.50
19421654--19421779	64	2.0	64	84	6	166	42	4	4	47	1.45
19422129--19422200	29	2.5	30	88	4	96	52	5	4	37	1.44
19422557--19422707	82	1.8	82	89	0	239	46	15	8	29	1.76
19423211--19423245	18	2.0	17	88	5	52	2	14	5	77	1.07
19423508--19423555	24	2.1	24	84	7	64	47	14	12	25	1.79
19423927--19424247	145	2.2	145	83	5	409	33	13	11	40	1.81
19423860--19424234	144	2.6	143	81	5	423	33	13	11	41	1.80
19423973--19424517	271	2.0	270	82	8	662	34	14	12	38	1.83
19432692--19432761	28	2.4	29	85	2	97	31	15	14	38	1.88
19432662--19432757	29	3.3	29	77	2	104	34	17	12	35	1.88
19433552--19433700	66	2.3	67	78	13	157	21	20	12	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19433678--19433840	33	4.9	33	75	3	101	23	20	9	46	1.79
19433699--19433877	33	5.3	33	76	7	128	24	20	9	46	1.80
19433668--19433877	68	3.1	69	77	2	160	23	20	9	47	1.79
19437129--19437175	23	2.0	24	87	4	69	72	0	4	23	1.02
19439867--19439943	40	1.9	40	82	10	95	37	6	6	49	1.55
19449747--19449882	64	2.1	62	78	6	139	36	8	13	41	1.75
19457335--19457365	15	2.1	15	93	0	53	3	19	0	77	0.90
19458771--19459518	375	2.0	375	97	0	1406	28	22	15	33	1.95
19465401--19465450	25	2.0	25	92	3	84	52	4	20	24	1.63
19465593--19465634	22	1.9	22	90	0	66	45	4	9	40	1.58
19474436--19474472	18	2.0	20	89	10	60	64	0	2	32	1.07
19483341--19483366	12	2.2	12	100	0	52	23	7	0	69	1.14
19487281--19487662	202	1.9	201	83	3	500	30	19	15	33	1.93
19504490--19504868	203	1.9	202	88	1	571	30	20	15	32	1.94
19511622--19511646	12	2.1	12	100	0	50	60	16	0	24	1.36
19512659--19512692	17	1.9	18	94	5	61	26	14	17	41	1.88
19514009--19514061	21	2.5	20	74	17	54	30	5	24	39	1.78
19514108--19514158	23	2.1	25	85	7	70	37	13	11	37	1.82
19514127--19514171	16	2.8	16	96	0	81	31	13	13	42	1.82
19514373--19514848	43	11.1	43	84	5	538	24	13	18	43	1.86
19514922--19514965	10	4.8	9	81	13	54	84	4	11	0	0.77
19515660--19515699	19	2.1	19	86	9	55	30	7	17	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19515773--19515810	19	2.0	19	89	0	58	21	10	31	36	1.87
19516198--19516240	12	3.5	12	78	6	50	23	0	9	67	1.19
19520090--19520120	6	5.0	6	96	4	53	80	0	16	3	0.83
19521722--19521772	19	2.7	19	82	8	59	31	1	5	60	1.31
19521682--19521763	32	2.6	31	86	1	110	31	4	6	57	1.44
19521682--19521771	6	14.3	6	71	17	58	31	4	5	58	1.41
19522736--19522792	27	2.1	27	84	12	73	17	10	0	71	1.12
19522889--19522965	20	3.7	20	72	16	75	32	5	9	53	1.55
19522870--19522931	28	2.2	28	82	2	72	32	3	8	56	1.44
19522916--19523138	55	4.1	55	77	7	184	32	4	10	52	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130