genome.fa.s556.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  44  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10421216--10421303	38	2.3	38	88	1	124	20	0	29	50	1.49
10421259--10421293	15	2.2	16	90	5	54	11	0	34	54	1.37
10421774--10421813	3	13.3	3	84	10	55	32	2	0	65	1.06
10421770--10421813	22	2.0	21	86	4	61	31	2	0	65	1.05
10423466--10423503	15	2.5	16	83	8	53	44	0	5	50	1.24
10424530--10424792	18	13.6	18	71	18	156	55	1	0	42	1.12
10424533--10424677	15	9.0	16	75	17	99	57	1	0	41	1.07
10424579--10424807	10	22.3	10	65	22	68	57	1	1	40	1.15
10424530--10424791	78	3.4	76	79	9	237	56	1	0	41	1.12
10424653--10424791	23	6.6	21	71	20	96	54	0	1	43	1.14
10424749--10424807	23	2.5	23	83	8	57	61	0	1	37	1.07
10424824--10424861	19	2.0	19	85	10	51	47	2	0	50	1.15
10424831--10424909	18	4.5	17	68	21	56	46	1	0	51	1.08
10424874--10424908	15	2.2	16	90	5	54	45	2	0	51	1.16
10426128--10426203	21	3.7	21	78	1	73	52	19	3	23	1.63
10428170--10428197	2	14.0	2	100	0	56	50	0	0	50	1.00
10428200--10428999	231	3.4	228	75	10	568	33	10	5	50	1.59
10428788--10428833	21	2.2	21	88	0	65	34	8	4	52	1.52
10442360--10442398	19	2.1	19	90	0	60	0	2	12	84	0.72
10442907--10442938	2	16.5	2	93	6	57	50	0	0	50	1.00
10450358--10450416	27	2.2	27	93	3	102	44	11	11	32	1.78
10455219--10455265	23	2.0	23	87	0	67	57	12	4	25	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10463163--10463284	64	1.9	62	83	3	154	47	6	2	43	1.42
10463502--10463575	36	2.1	36	92	0	121	31	18	14	35	1.92
10464330--10464356	14	1.9	14	100	0	54	7	7	11	74	1.23
10469358--10469408	22	2.4	22	87	6	70	68	7	0	23	1.15
10472864--10472909	18	2.6	18	76	16	51	36	4	2	56	1.31
10474622--10474837	18	11.4	18	73	20	133	55	1	1	41	1.19
10474622--10474820	41	4.7	39	80	14	148	54	2	1	42	1.21
10474633--10474823	23	8.8	23	73	16	174	53	2	1	42	1.22
10474635--10474746	22	4.8	25	71	22	84	52	2	0	43	1.21
10474634--10474833	13	15.2	13	68	20	98	55	2	1	41	1.20
10474656--10474820	41	3.9	41	86	9	226	53	2	1	42	1.21
10474628--10474759	15	8.5	15	69	18	83	53	2	1	43	1.22
10474914--10474974	25	2.3	27	80	11	81	45	0	0	54	1.00
10475078--10475122	14	3.1	14	83	6	54	51	8	0	40	1.33
10475073--10475122	15	3.3	15	78	16	50	52	8	0	40	1.31
10475255--10475604	11	33.4	11	66	19	117	45	1	3	50	1.26
10475299--10475360	13	4.4	13	70	18	52	46	0	4	48	1.23
10475256--10475600	76	4.4	79	73	16	235	45	1	3	50	1.26
10475270--10475851	94	6.1	97	71	18	311	46	0	3	49	1.25
10475270--10475829	51	11.4	50	71	16	251	46	0	3	49	1.25
10475665--10475858	26	6.9	28	70	20	120	50	0	4	45	1.21
10475485--10475733	26	9.6	25	67	20	90	45	0	3	51	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10475252--10475706	5	92.8	5	64	22	96	44	0	3	51	1.24
10475677--10475858	46	4.0	44	73	17	129	51	0	3	45	1.19
10475677--10475793	14	7.9	14	70	16	67	52	0	4	43	1.21
10475777--10475832	22	2.5	22	85	5	69	57	0	1	41	1.09
10475252--10475732	11	45.4	11	65	22	108	44	0	3	50	1.24
10475958--10475996	11	3.6	11	89	3	53	74	2	5	17	1.12
10494340--10494402	30	2.2	31	80	13	80	36	28	12	22	1.91
10495040--10495074	17	1.9	19	88	11	56	28	2	0	68	1.04
10495609--10495690	41	2.0	41	97	0	155	36	20	9	32	1.86
10499176--10499232	30	1.9	30	100	0	114	28	12	24	35	1.91
10499373--10499510	69	2.0	69	82	0	168	33	16	20	29	1.95
10500375--10500401	14	1.9	14	100	0	54	29	7	7	55	1.55
10500815--10500851	6	6.7	6	90	9	53	89	0	10	0	0.49
10503256--10503299	14	2.9	15	83	10	54	56	2	0	40	1.11
10503827--10503859	2	16.5	2	100	0	66	51	0	0	48	1.00
10509746--10509856	56	2.0	56	90	0	177	27	23	11	37	1.89
10511531--10511567	2	18.5	2	94	0	65	45	0	0	54	1.00
10512982--10513268	72	4.0	73	77	8	250	36	10	10	43	1.72
10513023--10513268	72	3.4	72	81	5	275	35	9	11	43	1.73
10515201--10515381	96	1.9	96	85	4	249	24	3	19	52	1.62
10524407--10524439	2	16.5	2	93	0	57	48	0	0	51	1.00
10526540--10526675	71	1.9	71	89	3	211	41	18	13	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10526735--10526822	23	3.5	23	75	21	72	52	1	0	46	1.08
10526854--10526910	18	3.2	18	94	0	105	40	5	29	24	1.77
10527596--10527680	30	2.8	31	80	5	93	36	11	3	48	1.57
10527625--10527700	30	2.5	30	84	0	89	39	10	2	47	1.52
10527721--10527794	29	2.6	27	85	8	85	52	1	6	39	1.36
10530213--10530273	31	2.0	31	86	0	86	40	11	14	32	1.82
10540304--10540358	16	3.5	16	73	9	51	36	7	20	36	1.80
10540753--10540822	30	2.3	30	82	2	77	28	12	12	45	1.79
10541243--10541310	29	2.3	30	84	2	93	36	10	11	41	1.76
10541405--10541528	30	4.1	30	81	2	81	29	12	20	38	1.88
10541389--10541558	90	1.9	90	81	4	209	29	11	20	38	1.88
10541509--10541648	30	4.7	29	74	7	111	30	8	19	41	1.81
10541511--10541747	30	8.0	28	72	10	107	32	9	19	37	1.85
10541719--10541859	30	4.7	30	69	11	92	36	9	17	36	1.82
10541811--10541876	30	2.2	30	83	5	80	34	9	19	36	1.84
10541913--10541970	30	1.9	31	85	3	82	27	8	20	43	1.81
10541841--10541997	59	2.6	59	76	13	160	31	8	20	39	1.83
10542071--10542155	30	2.9	30	82	5	84	35	15	16	32	1.90
10542081--10542184	30	3.5	30	85	2	138	36	10	17	35	1.84
10542081--10542206	60	2.1	60	83	2	155	37	11	16	34	1.84
10541891--10542273	209	1.8	209	79	3	439	33	11	18	36	1.86
10542517--10542628	47	2.4	47	77	7	120	20	12	21	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10542647--10542907	47	5.6	47	73	1	155	27	13	21	37	1.91
10546551--10546753	63	3.3	62	77	8	232	34	12	16	36	1.87
10546551--10546722	61	2.8	61	78	8	213	34	12	16	35	1.87
10547510--10547618	47	2.3	47	84	3	139	24	11	22	41	1.86
10547698--10547816	46	2.6	47	76	2	114	32	16	16	33	1.92
10547797--10547863	30	2.2	30	84	5	82	26	14	22	35	1.93
10547814--10547957	47	3.0	47	81	3	173	23	15	22	38	1.92
10550082--10550117	18	1.9	19	94	5	65	58	0	0	41	0.98
10550080--10550128	18	2.8	17	79	14	55	59	0	0	40	0.98
10550306--10550342	18	2.1	18	90	10	58	51	5	0	43	1.24
10554154--10554187	17	2.0	17	88	0	50	8	11	0	79	0.94
10554901--10554940	21	1.9	21	94	0	71	27	2	10	60	1.42
10571015--10571041	8	3.4	8	100	0	54	25	0	0	74	0.83
10572059--10572120	27	2.3	28	75	13	67	29	3	8	59	1.42
10572577--10572682	45	2.3	46	85	1	133	25	30	18	25	1.98
10576855--10576895	19	2.1	20	90	4	66	17	43	17	21	1.87
10594453--10594515	21	3.0	21	100	0	126	9	14	42	33	1.78
10612712--10612817	51	2.1	51	89	3	160	33	11	18	36	1.87
10622575--10622605	13	2.4	13	94	0	53	9	16	35	38	1.81
10628735--10628781	21	2.2	21	100	0	94	23	40	25	10	1.87
10629898--10629934	18	2.1	18	100	0	74	32	10	29	27	1.90
10635451--10635607	83	1.9	83	89	2	244	22	26	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10638612--10638665	28	1.9	28	85	7	74	33	9	22	35	1.86
10656669--10656869	3	67.3	3	71	17	116	32	3	5	58	1.39
10657683--10657721	12	3.2	12	85	7	53	23	0	2	74	0.94
10657668--10657739	25	3.2	24	78	20	66	20	1	4	73	1.07
10657676--10657727	18	2.9	18	81	13	54	23	0	3	73	1.00
10657675--10657745	24	3.0	24	76	17	67	22	0	4	73	1.01
10657751--10657785	13	2.6	13	90	4	52	20	2	2	74	1.08
10663297--10663618	120	2.7	120	80	4	328	23	23	10	42	1.84
10663393--10663618	121	1.9	120	84	2	301	23	23	11	42	1.86
10663911--10663960	25	2.0	25	92	0	82	22	20	16	42	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130