genome.fa.s556.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  68  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14171248--14171333	33	2.6	33	87	5	111	34	10	15	39	1.81
14171307--14171363	18	3.2	18	82	0	60	36	3	19	40	1.69
14171522--14171560	19	2.0	19	85	5	51	35	12	7	43	1.72
14171541--14171593	18	2.9	17	78	10	61	37	13	13	35	1.83
14174119--14174148	13	2.3	13	94	0	51	40	0	10	50	1.36
14174226--14174276	3	17.3	3	85	4	68	33	3	1	60	1.26
14175181--14175223	16	2.6	16	88	7	59	25	2	0	72	0.97
14188353--14188401	23	2.1	23	88	7	73	75	2	10	12	1.13
14189887--14189936	20	2.5	20	86	0	64	54	14	8	24	1.66
14191975--14192105	7	20.1	7	68	16	59	45	37	0	16	1.53
14191975--14192049	20	3.7	21	76	16	79	45	34	0	20	1.51
14191972--14192049	13	5.8	13	77	15	54	47	33	0	19	1.50
14191999--14192066	26	2.7	26	80	11	77	50	33	0	16	1.45
14192002--14192066	13	5.0	13	81	5	69	47	35	0	16	1.47
14191993--14192110	19	6.2	19	70	14	73	45	36	0	16	1.54
14192227--14192278	17	2.9	19	77	13	65	26	17	7	48	1.74
14192303--14192345	14	2.9	15	82	6	52	41	2	2	53	1.26
14195787--14195829	13	3.5	12	81	15	52	74	0	18	6	1.04
14195777--14195830	24	2.3	23	83	6	63	79	0	14	5	0.90
14199309--14199348	21	1.9	21	100	0	80	32	10	22	35	1.87
14201371--14201414	17	2.4	19	85	11	56	29	0	6	63	1.20
14219954--14220163	113	1.9	113	91	0	348	30	10	19	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14220067--14220257	94	2.0	94	90	0	301	30	12	19	37	1.89
14220465--14220494	16	1.9	15	93	6	51	86	0	13	0	0.57
14221160--14221189	5	6.0	5	92	0	51	60	3	20	16	1.50
14221161--14221189	15	1.9	15	100	0	58	62	3	20	13	1.46
14222057--14222105	21	2.3	21	86	6	64	77	2	6	14	1.05
14223225--14223258	14	2.5	13	90	4	50	88	0	11	0	0.52
14223756--14223820	23	2.8	23	82	13	64	76	3	20	0	0.91
14224025--14224920	33	27.4	33	70	12	280	38	15	16	28	1.90
14223990--14224605	66	9.4	66	71	8	310	38	16	18	27	1.91
14224099--14224341	129	1.9	130	81	0	299	37	15	18	28	1.92
14224316--14224406	34	2.7	33	81	3	101	42	18	13	25	1.86
14223990--14224592	100	6.1	99	72	9	303	38	15	18	27	1.91
14224436--14224767	129	2.6	129	78	4	337	38	15	16	29	1.89
14224589--14224701	32	3.5	31	78	7	111	40	14	13	31	1.84
14225182--14225473	46	6.4	46	85	2	347	33	11	9	45	1.73
14225586--14225624	17	2.2	18	95	4	71	84	10	0	5	0.76
14235194--14235435	121	2.0	121	99	0	475	31	11	16	39	1.85
14237616--14237679	25	2.6	25	82	0	65	43	20	1	34	1.61
14238018--14238088	24	2.8	24	82	8	79	39	15	4	40	1.67
14239959--14239994	16	2.3	16	90	4	56	58	2	2	36	1.27
14240302--14240356	27	2.0	27	89	6	85	49	1	1	47	1.23
14241281--14241318	16	2.3	17	86	4	60	36	0	5	57	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14252687--14252732	20	2.3	20	88	0	65	45	0	4	50	1.21
14267116--14267141	2	13.0	2	100	0	52	50	0	0	50	1.00
14278131--14278169	21	1.9	20	84	5	51	7	43	0	48	1.31
14283159--14283236	39	2.0	39	92	0	129	12	25	15	46	1.81
14284752--14284795	22	2.0	22	95	0	79	43	13	11	31	1.80
14303112--14303169	27	2.1	27	90	0	89	34	5	31	29	1.79
14305531--14305588	17	3.4	17	90	4	82	63	13	1	20	1.38
14305794--14305844	22	2.3	22	83	6	59	45	5	3	45	1.46
14306162--14306262	52	1.9	52	91	0	166	35	13	12	37	1.84
14314975--14315016	19	2.3	19	87	4	59	59	9	4	26	1.48
14315694--14315747	25	2.2	24	96	3	99	44	11	7	37	1.68
14317525--14317562	18	2.1	18	85	9	51	36	13	0	50	1.42
14322108--14322147	18	2.2	18	90	0	62	67	7	0	25	1.16
14324444--14324780	58	5.8	58	80	9	364	38	13	7	40	1.72
14324449--14324780	115	2.9	114	82	9	334	38	12	7	41	1.71
14324797--14324841	5	9.4	5	85	9	67	77	0	2	20	0.87
14324864--14324897	3	11.0	3	93	6	59	67	0	0	32	0.91
14324799--14324897	18	5.8	18	73	15	61	67	3	2	27	1.16
14325718--14325867	24	6.3	23	79	13	137	63	0	4	32	1.15
14325734--14325848	27	4.3	27	82	12	139	63	0	5	31	1.16
14325712--14325874	49	3.3	49	86	9	210	63	0	4	31	1.15
14325815--14325863	19	2.7	18	84	6	64	69	0	2	28	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14325722--14325891	51	3.6	47	75	18	138	64	0	4	31	1.13
14326049--14326095	17	2.8	17	96	3	87	4	12	0	82	0.80
14326117--14326551	41	10.4	41	84	3	485	36	20	16	26	1.94
14326162--14326562	206	1.9	205	84	4	536	35	20	15	27	1.94
14328490--14328585	47	2.0	47	97	0	183	36	12	17	33	1.88
14332909--14333048	70	2.0	70	100	0	280	31	15	15	37	1.89
14338149--14338361	58	3.7	58	86	2	277	37	12	5	44	1.65
14338149--14338359	59	3.7	56	85	5	253	37	12	5	44	1.66
14338432--14338487	3	18.7	3	90	7	87	69	0	1	28	0.98
14339340--14339397	22	2.6	22	88	2	80	60	0	6	32	1.23
14339388--14339443	24	2.6	21	80	20	71	62	0	3	33	1.12
14339332--14339429	51	1.9	51	87	8	146	61	0	6	32	1.21
14343724--14343768	20	2.3	19	77	11	54	53	4	0	42	1.21
14347106--14347136	2	15.5	2	93	0	53	51	0	0	48	1.00
14349315--14349351	2	18.5	2	100	0	74	0	48	0	51	1.00
14350435--14350554	42	2.9	42	78	15	108	45	1	0	51	1.16
14351355--14351392	12	2.9	14	80	15	53	39	0	0	60	0.97
14351475--14351547	16	4.7	15	72	13	58	15	6	1	76	1.05
14351475--14351543	23	2.9	24	79	14	72	14	7	1	76	1.06
14351472--14351544	32	2.2	33	85	9	96	13	8	1	76	1.07
14354815--14354855	20	2.0	21	90	4	66	53	0	0	46	1.00
14357999--14358034	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14359669--14359741	26	2.7	27	80	8	85	71	5	4	19	1.22
14360113--14360150	19	2.0	19	89	0	58	50	36	0	13	1.42
14360560--14360600	3	13.7	3	100	0	82	65	0	0	34	0.93
14360896--14361052	73	2.2	73	84	4	201	43	14	19	22	1.87
14360968--14361640	119	5.7	118	80	6	648	42	15	21	19	1.88
14360968--14361640	237	2.8	236	80	4	707	42	15	21	19	1.88
14361794--14361954	86	1.9	84	82	7	200	40	16	15	27	1.89
14361937--14361971	17	2.1	16	89	5	52	28	17	25	28	1.97
14363006--14363050	11	4.4	11	83	16	60	0	8	4	86	0.69
14363001--14363050	19	2.7	18	81	9	64	0	8	4	88	0.64
14363266--14363306	17	2.5	17	88	4	57	0	9	4	85	0.73
14363337--14363366	14	2.1	14	93	0	51	0	16	0	83	0.65
14363276--14363425	61	2.5	61	81	11	157	14	16	6	62	1.51
14368976--14369137	78	2.1	78	81	1	182	38	11	8	41	1.71
14370631--14370670	15	2.6	15	92	4	62	40	0	0	60	0.97
14370942--14371055	21	5.3	20	75	16	70	50	3	0	44	1.24
14371005--14371059	23	2.6	21	81	15	69	47	3	1	47	1.30
14371015--14371068	23	2.4	23	93	3	92	50	3	0	46	1.19
14370952--14371055	43	2.4	44	84	9	124	51	3	0	43	1.26
14371085--14371137	15	3.3	15	84	12	61	43	0	0	56	0.99
14371082--14371136	19	3.2	18	82	15	71	43	0	0	56	0.99
14371081--14371186	34	3.1	34	76	10	92	45	1	0	51	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14371653--14371699	16	2.9	16	83	3	58	38	0	0	61	0.96
14371664--14371704	16	2.7	15	85	7	55	36	0	0	63	0.95
14379186--14379241	19	2.9	19	94	0	103	17	21	3	57	1.55
14382858--14382966	29	3.8	29	73	12	100	35	0	2	61	1.10
14382836--14382958	58	2.1	59	80	10	137	40	0	3	55	1.22
14382936--14382988	23	2.3	23	83	3	72	45	0	0	54	0.99
14382949--14382998	23	2.2	23	78	3	57	50	2	0	48	1.12
14383076--14383262	94	2.0	94	96	1	349	40	5	13	41	1.67
14385067--14385109	21	2.0	21	81	0	50	53	0	0	46	1.00
14385250--14385306	22	2.8	21	82	12	75	49	0	1	49	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130