genome.fa.s556.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  101  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19780422--19780709	85	3.4	85	77	9	293	28	15	18	38	1.91
19780740--19780848	42	2.5	42	88	2	146	31	13	16	38	1.88
19780639--19780842	102	2.0	99	84	4	266	29	13	16	39	1.87
19780740--19780870	43	3.1	43	85	2	165	29	12	18	39	1.88
19781799--19781840	21	2.0	20	86	4	57	28	2	9	59	1.41
19781719--19781852	32	4.1	33	82	5	157	29	4	11	55	1.55
19781719--19781852	33	4.1	33	81	12	143	29	4	11	55	1.55
19783243--19783534	144	2.0	145	79	8	319	30	13	14	41	1.84
19786232--19786358	25	5.2	25	75	9	136	28	14	7	49	1.71
19788701--19788753	25	2.1	25	96	0	97	39	5	7	47	1.56
19789694--19789731	9	4.2	9	96	0	67	34	28	0	36	1.58
19790382--19790447	21	3.1	21	88	0	87	69	6	4	19	1.27
19796512--19796569	29	2.0	28	81	15	66	70	13	5	10	1.31
19806672--19806725	26	2.1	26	85	0	72	53	9	3	33	1.50
19812585--19812670	29	3.0	29	77	6	86	48	1	1	48	1.16
19812685--19812734	24	2.1	24	92	0	82	54	0	2	44	1.11
19818414--19818471	20	3.0	19	78	9	64	53	0	1	44	1.10
19820032--19820102	35	2.0	35	97	0	133	43	12	5	38	1.66
19820273--19820363	14	6.3	15	75	11	59	18	1	29	50	1.54
19820283--19820352	28	2.5	28	83	6	79	17	0	32	50	1.46
19820287--19820372	28	3.0	28	77	11	77	18	0	29	52	1.46
19820326--19820377	22	2.4	21	80	3	59	15	0	26	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19820388--19820455	21	3.2	21	71	10	57	16	4	26	52	1.62
19820512--19820571	28	2.1	29	87	9	88	20	0	31	48	1.50
19820540--19820593	21	2.5	22	73	8	58	22	0	25	51	1.48
19820583--19820637	16	3.7	15	71	14	51	16	0	38	45	1.47
19820577--19820644	29	2.3	29	85	7	84	19	0	32	48	1.49
19820512--19820657	71	2.1	70	82	10	172	21	0	28	50	1.49
19821914--19821995	35	2.3	35	87	2	119	10	8	42	37	1.71
19822732--19822775	17	2.6	18	86	10	58	59	4	0	36	1.18
19822737--19822775	16	2.4	16	87	12	53	66	5	0	28	1.12
19822753--19822803	26	1.9	27	84	4	68	70	9	1	17	1.24
19822897--19822931	16	2.4	14	90	9	52	68	2	0	28	1.04
19822952--19823038	36	2.4	36	81	11	97	64	11	2	21	1.37
19826103--19826248	52	2.8	52	85	2	177	26	24	8	41	1.83
19826273--19826303	11	2.8	11	100	0	62	51	29	0	19	1.47
19826644--19826727	30	2.7	31	88	3	134	23	26	21	28	1.99
19827212--19827336	52	2.4	52	86	0	160	30	25	7	36	1.83
19827212--19827365	52	3.0	52	83	5	152	28	24	7	39	1.82
19827393--19827434	11	3.8	11	100	0	84	52	28	0	19	1.46
19827771--19827855	31	2.7	31	85	0	116	23	23	21	31	1.98
19828340--19828484	52	2.8	52	82	2	175	26	25	8	40	1.84
19832215--19832265	22	2.3	22	80	12	61	33	0	1	64	1.05
19833089--19833120	13	2.4	14	94	5	57	90	9	0	0	0.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19833651--19833681	15	2.1	15	100	0	62	25	25	6	41	1.79
19854645--19854858	58	3.5	59	79	8	200	47	21	5	25	1.71
19856915--19856940	2	13.0	2	100	0	52	50	0	0	50	1.00
19868427--19868451	13	1.9	13	100	0	50	92	8	0	0	0.40
19870454--19870518	2	32.5	2	90	6	105	52	1	46	0	1.10
19872003--19872057	28	1.9	29	82	10	69	47	0	1	50	1.11
19872033--19872067	18	1.9	18	88	0	52	57	0	0	42	0.99
19875061--19875533	134	3.6	134	79	5	519	29	13	16	40	1.87
19878885--19878919	14	2.5	14	100	0	70	45	14	11	28	1.79
19884904--19885145	80	3.0	80	82	0	304	24	7	23	44	1.78
19890723--19890768	2	23.0	2	86	0	65	52	0	2	45	1.13
19890723--19890767	12	3.8	12	90	0	72	53	0	2	44	1.13
19891144--19891184	18	2.2	18	86	4	55	39	9	2	48	1.49
19893009--19893058	21	2.4	22	80	10	59	36	4	24	36	1.74
19893993--19894030	18	2.2	18	85	4	51	34	0	0	65	0.93
19896018--19896080	10	6.1	11	72	10	53	28	7	15	47	1.74
19896100--19896138	19	2.1	19	85	4	53	25	7	15	51	1.70
19900961--19901000	12	3.2	12	89	3	62	42	0	0	57	0.98
19900960--19900996	15	2.5	15	95	0	65	40	0	0	59	0.97
19901933--19902238	145	2.1	145	80	4	352	43	13	12	31	1.80
19901872--19902238	144	2.5	143	77	6	368	44	12	12	30	1.79
19910825--19911020	104	1.9	105	86	3	279	40	10	10	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19911091--19911145	18	2.8	20	75	13	60	45	7	3	43	1.49
19918201--19918235	16	2.2	16	94	0	61	45	17	14	22	1.84
19919610--19919876	143	1.9	143	81	4	333	29	19	21	29	1.98
19919891--19920107	105	2.1	106	82	4	260	29	16	19	35	1.93
19920808--19920859	18	2.8	17	75	13	50	53	0	0	46	1.00
19921201--19921239	16	2.4	17	86	4	53	23	5	5	66	1.32
19929167--19929192	10	2.6	10	100	0	52	92	0	7	0	0.39
19933234--19933758	149	3.5	147	76	6	486	54	8	17	20	1.67
19934918--19934977	26	2.3	26	79	0	66	38	13	11	36	1.81
19935393--19935436	18	2.5	18	88	3	63	84	2	9	4	0.85
19936428--19936549	53	2.3	53	78	10	124	31	13	14	40	1.84
19936853--19936919	19	3.5	19	77	16	66	82	11	2	2	0.90
19940401--19940557	71	2.2	71	86	2	217	33	10	13	42	1.79
19942942--19942980	19	2.1	19	85	0	51	46	0	2	51	1.14
19942980--19943088	56	1.9	56	85	7	150	53	5	5	35	1.48
19943162--19943208	24	1.9	25	86	4	69	44	0	10	44	1.38
19944330--19944418	46	1.9	46	84	4	117	31	6	14	47	1.70
19944351--19944421	25	3.0	23	70	15	65	29	8	12	49	1.70
19944339--19944485	45	3.2	46	76	10	115	31	8	12	46	1.73
19944421--19944606	47	4.0	47	74	9	166	37	9	11	42	1.73
19944593--19944734	20	7.3	20	67	20	70	35	7	10	45	1.68
19944647--19944771	58	2.2	58	85	4	164	33	8	10	48	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19944597--19944874	95	2.9	94	83	2	313	34	7	10	47	1.66
19944711--19944807	37	2.6	37	82	6	117	34	11	9	45	1.72
19944661--19944989	154	2.1	154	88	0	480	34	9	9	46	1.68
19944780--19944894	59	1.9	59	85	0	158	33	8	8	48	1.65
19944938--19944983	20	2.2	22	92	7	78	26	8	13	52	1.69
19944972--19945019	15	3.1	15	85	8	62	31	10	12	45	1.76
19945003--19945078	21	3.8	21	72	21	74	28	11	9	50	1.70
19944988--19945079	37	2.5	37	77	8	116	29	10	10	48	1.72
19945141--19945187	21	2.3	20	75	13	51	17	17	12	53	1.73
19945192--19945257	21	3.2	21	85	6	82	25	15	10	48	1.77
19945119--19945263	63	2.3	62	80	6	150	22	13	12	52	1.73
19945773--19945799	1	27.0	1	100	0	54	100	0	0	0	0.00
19947498--19947555	16	3.6	16	73	13	55	65	1	3	29	1.19
19949196--19949225	15	2.0	15	93	0	51	63	3	0	33	1.11
19949394--19949445	18	2.8	18	85	5	59	67	1	1	28	1.12
19949419--19949463	18	2.4	19	81	7	56	60	2	8	28	1.39
19949247--19949767	285	1.8	282	82	6	676	51	4	11	32	1.59
19952368--19952424	18	3.2	18	79	15	66	71	1	0	26	0.95
19956600--19956634	3	11.7	3	100	0	70	68	0	0	31	0.90
19964938--19965042	48	2.2	49	80	11	119	29	11	19	40	1.86
19965046--19965159	48	2.4	48	85	2	142	31	14	16	37	1.88
19965430--19965459	3	10.0	3	100	0	60	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19967216--19967258	17	2.6	17	92	3	70	74	0	0	25	0.82
19968065--19968185	64	1.9	64	86	3	172	43	7	9	38	1.66
19968046--19968197	64	2.4	64	78	7	164	45	6	10	37	1.65
19969310--19969362	16	3.3	15	77	12	61	54	0	0	45	0.99
19969314--19969558	100	2.5	95	81	4	267	43	3	3	49	1.36
19975275--19975305	16	1.9	16	93	0	53	22	6	29	41	1.78
19975322--19975411	46	2.0	46	82	8	112	27	6	16	48	1.71
19976226--19976318	35	2.6	35	90	8	136	32	9	3	54	1.49
19979208--19979409	71	2.8	72	74	10	191	27	14	5	52	1.64
19979168--19979372	35	5.9	35	73	13	138	28	13	5	52	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130