genome.fa.s556.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  17  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4735849--4735928	34	2.5	33	73	17	78	50	5	1	43	1.32
4737896--4737978	29	2.8	30	75	15	84	37	4	0	57	1.20
4738032--4738076	23	2.0	23	95	0	81	53	0	2	44	1.13
4738046--4738118	30	2.5	30	81	2	94	60	0	2	36	1.11
4738111--4738157	18	2.6	17	75	18	51	59	0	6	34	1.23
4749912--4749938	2	13.5	2	100	0	54	51	0	0	48	1.00
4774035--4774063	5	5.8	5	100	0	58	0	17	0	82	0.66
4777635--4777684	25	2.0	25	96	0	91	46	24	10	20	1.81
4790807--4790852	16	2.9	16	78	12	51	47	0	2	50	1.13
4808354--4808380	14	1.9	14	100	0	54	51	7	3	37	1.48
4808593--4808627	14	2.5	14	95	0	61	54	8	5	31	1.54
4808214--4808689	246	1.9	245	87	2	704	43	9	16	29	1.81
4818197--4818236	20	2.1	19	85	4	53	55	0	0	45	0.99
4829281--4829312	15	2.1	15	100	0	64	28	12	6	53	1.62
4837926--4837995	28	2.5	28	84	9	81	52	0	1	45	1.09
4838587--4838643	28	2.0	28	86	0	78	49	0	1	49	1.11
4838630--4838672	13	3.2	13	84	12	52	58	0	0	41	0.98
4838637--4838679	15	3.0	14	83	12	52	53	0	0	46	1.00
4839033--4839087	24	2.4	23	85	11	69	47	1	0	50	1.11
4839032--4839144	32	3.6	32	76	8	108	47	0	0	51	1.06
4839082--4839138	18	3.1	19	72	10	55	43	0	0	56	0.99
4842811--4842880	31	2.3	31	100	0	140	31	4	31	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4851647--4851727	40	2.0	40	95	0	144	29	28	18	23	1.98
4858271--4858298	3	9.3	3	100	0	56	67	0	0	32	0.91
4858297--4858328	3	10.7	3	100	0	64	68	0	31	0	0.90
4858805--4858889	43	2.0	43	100	0	170	52	2	0	44	1.13
4858805--4858867	15	4.3	15	71	15	60	52	3	0	44	1.17
4858936--4858990	20	2.7	21	77	8	60	32	0	1	65	1.03
4859626--4859695	25	2.7	27	78	8	74	45	0	1	52	1.09
4860293--4860330	15	2.5	15	87	8	51	34	2	0	63	1.09
4860290--4860322	10	3.4	10	87	8	50	36	0	0	63	0.95
4860396--4860452	18	3.2	17	80	9	60	40	5	0	54	1.23
4860541--4860573	15	2.2	15	100	0	66	24	27	30	18	1.98
4868434--4868489	17	3.1	17	79	20	60	82	5	1	10	0.91
4869562--4870703	110	10.4	108	76	8	986	20	22	13	43	1.86
4869572--4870670	218	5.0	216	79	7	970	20	21	13	43	1.86
4869555--4870658	328	3.4	329	86	3	1438	21	22	13	43	1.86
4870779--4870883	36	2.9	36	74	5	104	17	18	11	53	1.72
4871631--4871661	13	2.4	13	100	0	62	87	6	6	0	0.68
4872355--4872399	3	16.0	3	81	9	51	66	0	2	31	1.04
4877635--4877692	29	2.0	29	93	0	98	58	6	17	17	1.59
4877709--4877805	28	3.5	26	71	21	72	49	1	0	49	1.07
4877858--4877931	20	3.9	19	79	10	80	51	1	0	47	1.09
4884493--4884572	40	2.0	40	92	0	133	25	17	15	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4904375--4904412	2	20.5	2	84	15	55	50	0	0	50	1.00
4904364--4904413	15	3.4	15	81	10	50	46	0	6	48	1.27
4906313--4906349	15	2.5	15	90	0	56	37	29	5	27	1.79
4907559--4907587	2	14.5	2	100	0	58	48	0	0	51	1.00
4909265--4909313	25	2.0	25	84	11	66	42	0	8	48	1.32
4909717--4909743	2	13.5	2	100	0	54	48	0	0	51	1.00
4912743--4912948	77	2.5	82	84	9	273	48	3	7	40	1.50
4913509--4913562	26	2.0	27	85	3	74	46	1	1	50	1.23
4921353--4921383	15	2.1	15	93	0	53	70	0	0	29	0.87
4924722--4925602	438	2.0	438	100	0	1762	37	15	21	25	1.93
4933437--4933468	16	2.0	16	100	0	64	25	12	31	31	1.92
4941196--4941228	2	16.5	2	87	12	50	45	3	0	51	1.16
4941855--4941906	20	2.4	21	90	9	79	50	0	0	50	1.00
4942991--4943032	21	1.9	22	85	9	59	21	26	0	52	1.47
4947087--4947123	2	18.5	2	100	0	74	48	0	0	51	1.00
4950309--4950355	13	3.7	13	80	5	60	40	2	2	55	1.24
4950310--4950360	25	2.0	25	85	7	68	41	1	1	54	1.22
4952029--4952086	17	3.4	17	82	0	80	48	8	1	41	1.44
4952009--4952092	34	2.4	36	76	13	104	50	8	1	40	1.40
4953049--4953086	11	3.5	11	82	3	51	21	0	28	50	1.49
4954607--4954639	13	2.5	13	85	14	50	21	0	9	69	1.15
4962066--4962090	2	12.5	2	100	0	50	0	48	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4962369--4962399	15	2.0	16	93	6	55	0	16	0	83	0.64
4963339--4963372	15	2.3	15	94	0	59	67	20	0	11	1.21
4963344--4963369	12	2.2	12	100	0	52	69	23	0	7	1.14
4967004--4967057	25	2.2	25	93	0	90	33	7	20	38	1.80
4967248--4967282	17	2.1	17	100	0	70	17	17	31	34	1.93
4967265--4967433	64	2.6	64	94	0	284	23	17	34	24	1.96
4967410--4967456	23	2.0	23	100	0	94	25	21	31	21	1.98
4967346--4967580	87	2.7	87	93	0	407	24	18	33	23	1.97
4967497--4967543	23	2.0	23	91	0	76	27	19	29	23	1.98
4967479--4967728	104	2.4	104	92	0	419	25	17	30	26	1.97
4967601--4967647	23	2.0	23	95	0	85	25	21	29	23	1.99
4967671--4967705	17	2.1	17	94	0	61	20	17	28	34	1.95
4967624--4967807	81	2.3	81	89	0	287	23	16	33	26	1.96
4967705--4967910	103	2.0	103	93	0	349	22	16	35	25	1.94
4967396--4967972	184	3.1	184	88	2	798	23	17	33	26	1.96
4967812--4967972	81	2.0	81	93	0	277	21	16	35	26	1.94
4967936--4967970	17	2.1	17	100	0	70	17	17	31	34	1.93
4979500--4979531	13	2.4	14	94	5	57	43	21	0	34	1.53
4982096--4982153	24	2.5	24	85	2	82	50	12	8	29	1.69
4982234--4982267	15	2.3	15	94	0	59	67	20	0	11	1.21
4982239--4982264	12	2.2	12	100	0	52	69	23	0	7	1.14
4985913--4985966	25	2.2	25	93	0	90	35	9	16	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4986233--4986267	17	2.1	17	94	0	61	20	17	28	34	1.95
4986269--4986313	23	2.0	23	95	0	81	26	15	31	26	1.96
4986257--4986441	87	2.1	87	90	0	298	23	17	32	25	1.97
4986445--4986512	32	2.1	32	100	0	136	20	17	33	27	1.95
4986186--4986700	200	2.6	200	91	2	814	23	17	33	26	1.96
4986647--4986769	32	4.2	32	73	19	131	22	16	28	32	1.96
4986681--4986722	22	1.9	22	95	0	75	26	19	23	30	1.98
4986649--4986754	54	2.0	54	90	0	167	24	16	27	32	1.96
4991576--4991951	124	3.1	122	77	9	377	39	12	14	34	1.84
4991505--4991972	247	1.9	247	82	5	588	38	11	14	34	1.83
4993368--4994479	161	6.9	160	82	4	1150	32	8	14	43	1.75
4993373--4994452	484	2.2	480	85	2	1407	32	8	14	44	1.75
4993364--4994474	323	3.5	319	83	5	1240	32	8	14	44	1.75
4994328--4994636	170	1.8	171	79	4	365	34	7	13	44	1.72
5006988--5007092	52	2.0	52	88	3	158	30	17	8	43	1.78
5008952--5009023	36	2.0	36	100	0	144	55	8	16	19	1.66
5014228--5014262	17	2.1	17	88	0	52	34	5	14	45	1.68
5019224--5019434	46	4.6	46	72	8	153	39	6	14	39	1.73
5019844--5019974	68	1.9	68	81	3	156	39	16	17	26	1.90
5019933--5019976	17	2.6	17	82	7	54	40	18	13	27	1.88
5019928--5020028	51	2.0	52	82	5	125	38	19	12	28	1.89
5019979--5020052	35	2.1	36	82	12	91	35	18	14	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5024720--5024749	14	2.1	14	100	0	60	20	0	13	66	1.24
5029421--5030389	357	2.7	355	87	3	1293	35	12	14	36	1.84
5036136--5037003	433	2.0	433	96	0	1601	30	10	16	42	1.82
5040536--5040576	2	20.5	2	84	0	55	46	7	0	46	1.30
5042492--5042529	13	2.8	13	88	4	58	28	5	2	63	1.30
5042668--5042699	8	4.0	8	95	0	55	28	0	0	71	0.86
5045560--5045595	10	3.8	10	85	14	58	44	0	0	55	0.99
5045557--5045601	18	2.6	18	96	3	83	44	0	0	55	0.99
5051851--5051886	16	2.3	16	95	4	65	36	0	0	63	0.94
5052852--5052892	19	2.3	17	87	8	55	80	2	7	9	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130