genome.fa.s16.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  101  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31470751--31470801	25	2.0	25	84	7	66	19	5	1	72	1.15
31473682--31473723	21	2.0	22	85	4	59	71	2	23	2	1.10
31485648--31485697	9	5.6	9	80	4	57	74	8	6	12	1.22
31493013--31493053	21	1.9	22	85	5	57	43	17	2	36	1.62
31502987--31503011	11	2.3	11	100	0	50	16	0	16	68	1.22
31505442--31505506	31	2.1	31	82	5	78	58	15	7	18	1.60
31507986--31508051	31	2.1	31	88	5	98	34	7	10	46	1.67
31518681--31518721	21	2.0	21	95	0	73	36	4	17	41	1.71
31518682--31518729	21	2.3	21	88	0	69	37	6	14	41	1.71
31519963--31520001	15	2.6	15	87	0	51	51	2	28	17	1.59
31532352--31532384	16	2.1	16	94	0	57	24	0	21	54	1.45
31532388--31532429	21	2.0	21	86	9	59	21	4	9	64	1.42
31541583--31541620	18	2.2	17	90	9	60	68	5	0	26	1.11
31547308--31547342	17	2.1	17	88	0	52	42	34	2	20	1.66
31548684--31548721	18	2.2	17	86	9	51	44	5	21	28	1.73
31551517--31551570	12	4.6	12	77	13	58	5	0	33	61	1.19
31551517--31551570	11	4.6	11	77	11	54	5	0	33	61	1.19
31554772--31554806	17	2.1	17	94	0	61	25	5	8	60	1.49
31555575--31555678	35	3.1	35	61	20	87	18	20	41	20	1.91
31555555--31555678	64	1.9	64	100	0	248	17	22	41	18	1.91
31557545--31557585	20	2.0	20	85	0	55	39	2	19	39	1.65
31571217--31571256	21	1.9	21	85	10	55	22	10	5	62	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31576759--31576806	19	2.4	20	83	13	55	2	18	0	79	0.84
31576759--31576807	12	3.9	12	82	15	55	2	18	0	79	0.83
31577388--31577428	15	2.7	15	85	14	50	14	2	26	56	1.51
31577409--31577484	30	2.6	30	77	4	84	17	1	27	53	1.51
31577496--31577556	27	2.2	29	82	5	72	14	3	21	60	1.48
31578426--31578580	57	2.8	56	79	4	152	24	3	41	30	1.73
31580120--31580184	31	2.1	31	91	0	103	24	13	10	50	1.74
31589380--31589415	19	1.9	20	88	11	58	36	8	5	50	1.56
31631337--31631380	21	2.1	21	91	4	72	59	6	11	22	1.55
31639798--31639852	24	2.2	25	78	15	60	38	5	12	43	1.66
31646771--31646846	3	25.3	3	70	15	50	63	5	1	30	1.25
31650538--31650687	75	2.0	72	88	6	221	26	12	21	40	1.88
31650880--31651659	35	21.3	37	80	8	649	26	21	14	37	1.92
31650880--31651634	73	10.3	74	77	11	600	26	21	14	37	1.92
31650880--31651640	260	3.0	254	80	7	839	26	21	14	37	1.92
31661213--31661276	30	2.1	31	91	2	103	26	26	6	40	1.79
31661223--31661270	15	3.2	15	71	11	53	27	22	8	41	1.82
31665823--31665916	30	3.1	30	90	1	143	25	24	6	43	1.78
31665833--31665910	15	5.2	15	67	11	61	25	21	7	44	1.79
31667861--31667913	26	2.0	26	100	0	106	37	11	7	43	1.69
31671930--31671960	14	2.2	14	100	0	62	19	6	29	45	1.75
31672222--31672251	12	2.5	12	94	0	51	13	23	20	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31672765--31672974	91	2.3	91	85	4	271	44	4	4	46	1.44
31673002--31673033	16	1.9	17	93	6	57	53	0	0	46	1.00
31673026--31673238	61	3.4	63	69	17	194	41	2	6	49	1.41
31672988--31673280	120	2.4	120	92	2	482	42	2	5	50	1.36
31673109--31673143	18	2.0	17	88	5	52	40	0	0	60	0.97
31673229--31673263	18	2.0	17	88	5	52	45	0	0	54	0.99
31673217--31673491	147	1.9	149	96	1	509	47	2	3	46	1.32
31673376--31673410	18	2.0	17	88	5	52	45	0	0	54	0.99
31673572--31673666	45	2.1	44	84	9	122	32	25	6	35	1.81
31673647--31673698	16	3.2	16	94	0	86	34	36	0	28	1.58
31680683--31680730	24	2.0	25	84	12	64	60	8	0	31	1.26
31682434--31682473	16	2.4	17	83	8	55	72	2	7	17	1.19
31683408--31683441	5	7.0	5	93	6	61	79	0	20	0	0.73
31688194--31688274	22	3.8	22	88	6	105	35	8	19	35	1.83
31688220--31688286	22	3.0	23	80	6	68	35	5	17	40	1.75
31688540--31688572	15	2.1	16	94	5	59	30	9	0	60	1.27
31688816--31688892	37	2.1	37	80	11	86	37	9	1	51	1.42
31688987--31689030	23	2.0	22	90	4	70	34	6	2	56	1.38
31696601--31696907	52	6.1	51	84	10	400	35	14	22	28	1.93
31696587--31696907	98	3.3	98	87	7	447	34	14	22	28	1.93
31696601--31696896	150	2.0	150	94	0	520	35	14	21	28	1.93
31696803--31697018	37	5.3	44	87	9	199	37	14	21	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31696871--31697016	37	4.0	37	93	1	242	36	16	21	24	1.94
31698263--31698454	49	3.9	49	93	1	305	23	14	29	31	1.94
31698281--31698482	98	2.1	96	82	6	237	27	15	28	28	1.96
31701613--31701814	46	4.3	48	80	12	215	35	13	21	29	1.92
31701647--31701800	53	3.1	53	78	18	177	34	14	21	29	1.93
31701543--31701814	98	2.8	98	89	5	399	34	13	21	30	1.93
31701711--31701924	37	5.3	44	83	13	156	35	14	21	27	1.93
31701778--31701922	37	4.0	37	90	3	224	36	16	21	25	1.94
31701778--31701922	73	2.0	72	89	4	220	36	16	21	25	1.94
31703559--31703834	44	6.6	44	80	15	327	25	18	26	28	1.98
31703637--31703789	73	2.0	74	90	6	236	24	20	25	28	1.99
31703801--31704076	128	2.1	128	85	4	392	30	21	22	25	1.99
31704134--31704390	50	5.1	50	68	1	210	29	20	23	26	1.99
31704128--31704425	100	3.0	100	91	1	445	29	20	22	27	1.99
31705192--31705245	19	2.8	19	100	0	108	37	11	16	35	1.84
31705458--31705502	23	2.0	23	81	0	54	22	0	15	62	1.33
31705783--31705850	36	1.9	36	82	8	86	39	10	1	48	1.46
31705957--31706000	23	2.0	22	90	4	70	34	6	2	56	1.38
31710630--31710675	24	1.9	24	90	0	74	41	19	6	32	1.77
31714378--31714418	21	2.1	19	86	9	55	29	2	2	65	1.18
31715451--31715588	55	2.5	55	92	2	224	28	18	5	46	1.72
31717296--31717364	23	2.9	24	78	4	77	23	24	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31717298--31717385	24	3.7	24	75	11	74	25	22	25	27	2.00
31723975--31724106	45	2.9	45	78	2	122	43	12	19	25	1.85
31733000--31733135	49	2.6	52	80	11	161	25	19	30	24	1.98
31739948--31739977	8	3.8	8	100	0	60	63	0	0	36	0.95
31754776--31754875	52	1.9	52	91	0	164	33	15	10	42	1.80
31756586--31757008	209	2.0	209	95	0	756	45	9	14	30	1.78
31759052--31759122	36	2.0	35	89	5	108	60	7	5	26	1.45
31764743--31764984	50	4.9	50	83	4	269	21	28	21	28	1.99
31768697--31768840	41	3.5	40	87	7	211	27	20	26	25	1.99
31771235--31771377	42	3.3	41	72	20	116	28	27	18	25	1.98
31771265--31771387	44	2.8	44	80	8	137	31	28	17	21	1.97
31773930--31774110	40	4.6	40	85	0	211	46	25	14	13	1.81
31780008--31780132	43	2.9	43	82	3	128	28	25	16	29	1.96
31787657--31787714	25	2.3	27	80	19	72	46	13	3	36	1.61
31789899--31790056	43	3.7	43	84	4	212	29	24	15	30	1.96
31791403--31791445	22	2.0	22	85	0	59	48	9	6	34	1.62
31792979--31793525	114	4.8	114	82	4	622	25	22	25	27	2.00
31792944--31793525	227	2.6	226	81	4	676	25	22	24	27	2.00
31794175--31794215	14	2.9	15	82	13	52	24	0	34	41	1.55
31794171--31794233	28	2.3	28	80	2	74	28	0	33	38	1.58
31794568--31794616	14	3.6	14	83	5	55	12	0	42	44	1.41
31794577--31794620	14	3.2	14	83	6	63	6	0	43	50	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31795668--31795946	146	1.9	146	80	5	321	25	14	22	36	1.92
31796907--31796938	15	2.1	15	100	0	64	28	6	12	53	1.62
31797912--31798076	13	12.5	13	75	7	136	40	9	3	46	1.52
31797936--31798085	53	2.8	53	96	0	273	41	10	3	45	1.54
31798217--31798546	156	2.1	155	94	1	446	44	14	1	39	1.56
31798278--31798457	66	2.8	64	73	18	178	45	14	1	38	1.52
31798341--31798485	28	5.0	28	75	15	123	45	15	1	37	1.55
31798436--31798485	16	3.4	16	73	21	63	46	18	2	34	1.60
31798593--31798723	25	5.1	25	78	14	117	47	21	1	29	1.60
31798593--31798841	9	28.8	9	73	15	195	45	21	2	31	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170