genome.fa.s16.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  140  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42407416--42407492	16	4.3	17	71	19	59	49	2	5	42	1.39
42408190--42408230	16	2.7	14	82	17	55	19	2	24	53	1.57
42408776--42408875	22	4.5	21	70	18	78	53	4	2	41	1.31
42408777--42408922	67	2.1	67	94	2	256	53	4	2	40	1.32
42408742--42408862	57	2.2	51	79	16	134	54	3	2	39	1.30
42409364--42409400	19	1.9	19	89	10	58	37	0	2	59	1.12
42409365--42409405	5	8.4	5	81	13	50	36	0	2	60	1.10
42409364--42409404	9	4.3	9	84	9	55	39	0	2	58	1.11
42416941--42416967	14	1.9	14	100	0	54	48	14	7	29	1.71
42417557--42417602	24	1.9	24	86	0	65	34	8	43	13	1.74
42421418--42421658	50	4.7	50	81	5	187	29	21	27	20	1.98
42421471--42421666	50	3.9	50	83	0	248	27	22	29	20	1.99
42421471--42421659	100	1.9	101	86	3	274	27	22	29	20	1.98
42424056--42424096	21	2.0	21	85	9	57	39	0	39	21	1.54
42424134--42424170	9	4.1	9	92	0	65	29	10	13	45	1.77
42424224--42424254	9	3.4	9	90	0	53	41	19	12	25	1.87
42424384--42424473	13	7.2	13	74	9	55	51	15	3	30	1.60
42424431--42424472	4	10.2	4	84	5	57	50	21	2	26	1.61
42424457--42424569	60	1.9	57	84	8	147	53	15	4	27	1.61
42424564--42424649	23	3.6	24	76	10	88	58	16	0	25	1.38
42424545--42424648	43	2.3	43	83	6	127	58	15	0	25	1.43
42424572--42424655	13	6.6	13	76	5	73	57	16	0	26	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42424574--42424648	38	2.0	38	86	0	105	58	14	0	26	1.37
42424702--42424826	40	3.1	39	77	6	108	33	20	25	20	1.97
42425348--42425416	21	3.3	21	76	11	61	14	4	30	50	1.62
42425404--42425456	22	2.4	22	83	0	61	20	5	41	32	1.76
42425461--42425534	23	3.3	21	75	20	62	17	0	36	45	1.49
42425373--42425534	15	11.0	15	69	17	65	17	2	37	42	1.62
42425499--42425577	14	5.7	14	79	11	67	22	1	31	44	1.61
42425537--42425614	27	2.9	26	77	9	77	28	2	24	44	1.67
42425375--42425553	7	24.6	7	73	10	67	18	2	36	42	1.63
42425917--42426327	115	3.6	116	83	1	522	24	13	21	40	1.89
42427442--42427505	33	2.0	32	90	3	101	39	25	9	26	1.86
42427721--42427876	41	3.8	41	89	6	235	28	22	20	28	1.98
42435084--42435147	32	2.0	31	90	3	101	39	23	9	28	1.86
42435362--42435517	41	3.8	41	89	6	235	28	22	20	28	1.98
42440160--42440254	21	4.6	20	82	8	77	38	21	36	3	1.69
42440588--42440747	84	1.9	85	87	3	234	27	21	27	23	1.99
42440572--42440770	43	4.7	42	81	6	222	25	19	30	24	1.98
42440572--42440793	43	5.2	43	80	5	182	24	18	29	27	1.98
42440933--42441216	5	58.4	5	69	21	137	53	19	5	20	1.65
42440926--42441209	49	5.7	49	89	4	383	53	19	6	20	1.66
42441195--42441273	29	2.5	32	84	13	94	53	18	5	22	1.64
42443503--42443548	24	2.0	22	87	12	65	41	6	4	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42444486--42444526	18	2.3	18	80	16	50	70	4	0	24	1.06
42448734--42448811	24	3.2	24	87	3	104	35	16	16	30	1.92
42453095--42453129	12	2.8	12	86	4	52	62	0	8	28	1.24
42467761--42467833	25	2.9	25	77	4	67	24	23	15	36	1.93
42467797--42467852	25	2.2	25	84	6	69	23	23	17	35	1.95
42474814--42474850	17	2.2	17	95	0	65	48	5	18	27	1.70
42480266--42480724	229	2.0	230	91	0	740	36	19	13	30	1.90
42489484--42489806	92	3.5	91	71	12	271	36	15	20	28	1.92
42489417--42489900	186	2.6	185	87	1	662	35	15	20	28	1.93
42489080--42489901	93	8.8	93	69	14	345	35	16	20	28	1.94
42489821--42490378	237	2.4	237	88	0	819	36	18	19	25	1.94
42493281--42493343	31	2.1	30	82	8	74	53	1	1	42	1.19
42493318--42493355	19	2.0	19	85	10	51	60	2	0	36	1.11
42493779--42493880	51	2.0	51	98	0	195	37	6	7	48	1.59
42498287--42498336	20	2.3	20	83	10	55	46	0	4	50	1.20
42502473--42502498	5	5.2	5	100	0	52	61	0	0	38	0.96
42503888--42504012	60	2.1	60	100	0	250	28	12	11	48	1.74
42507076--42507117	16	2.6	16	81	11	50	50	2	0	47	1.14
42507076--42507126	15	3.5	15	81	10	52	50	1	0	47	1.12
42507074--42507320	120	2.0	120	95	0	440	48	5	2	43	1.38
42507191--42507237	16	3.0	16	78	12	53	51	2	0	46	1.13
42507124--42507311	61	3.1	61	68	19	176	48	6	2	42	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42507305--42507344	16	2.4	16	84	15	55	55	0	2	42	1.13
42507292--42507344	17	3.2	17	77	20	58	52	1	3	41	1.30
42507086--42507367	120	2.4	119	88	5	365	50	4	2	42	1.36
42507327--42507585	47	5.7	46	68	18	175	47	2	3	46	1.32
42507387--42507429	13	3.2	13	78	15	52	58	0	0	41	0.98
42507190--42507675	182	2.6	185	81	11	562	48	3	2	45	1.35
42507361--42507659	91	3.3	91	91	3	485	46	2	3	47	1.34
42507463--42507528	10	7.3	9	71	23	50	45	0	4	50	1.22
42507488--42507533	18	2.7	18	86	6	60	47	2	4	45	1.34
42511869--42511979	35	3.1	35	70	2	105	30	23	21	24	1.99
42511864--42512099	71	3.3	71	77	9	219	32	22	22	22	1.98
42512004--42512117	36	2.9	39	75	12	128	35	21	21	21	1.96
42511962--42512117	76	2.1	76	86	4	217	32	21	22	23	1.98
42511895--42512099	36	5.6	36	72	7	128	31	23	21	22	1.98
42515716--42516036	158	2.0	158	97	1	608	37	24	3	34	1.72
42515782--42516022	78	3.1	77	61	23	167	38	24	4	33	1.74
42517445--42517570	66	1.9	66	82	6	157	36	7	12	43	1.70
42518693--42518953	90	2.9	90	83	2	310	28	21	14	36	1.92
42520646--42520708	30	2.1	30	93	0	108	57	14	3	25	1.52
42521347--42521407	20	2.9	21	80	14	63	50	0	3	45	1.17
42521345--42521408	25	2.7	24	81	15	80	51	0	3	45	1.17
42523256--42523673	196	2.2	193	76	5	414	33	20	20	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42523844--42524298	14	31.0	14	68	15	82	22	1	33	42	1.64
42523858--42523947	7	12.9	7	78	0	54	18	0	26	54	1.44
42524051--42524121	28	2.5	29	86	8	94	18	0	42	39	1.50
42523951--42524111	71	2.2	72	84	6	211	21	1	37	39	1.62
42524051--42524284	64	3.7	62	73	7	200	22	2	35	40	1.66
42523951--42524135	71	2.6	71	80	8	205	22	1	36	40	1.61
42524179--42524297	7	16.9	7	68	11	64	22	2	36	38	1.68
42524172--42524298	21	6.0	21	72	7	96	24	2	35	37	1.69
42524710--42524748	20	2.0	20	100	0	78	28	35	0	35	1.58
42527247--42527282	18	1.9	19	94	5	65	63	2	5	27	1.30
42528935--42529132	103	1.9	101	94	2	351	43	8	4	42	1.55
42529197--42529477	9	32.0	9	68	16	83	49	14	0	34	1.49
42529204--42529436	94	2.7	84	82	11	274	50	14	0	34	1.49
42529347--42529389	15	2.9	15	89	0	68	55	11	0	32	1.36
42529368--42529432	34	2.0	34	88	8	100	50	15	0	33	1.44
42529423--42529487	19	3.3	19	75	12	76	43	15	0	41	1.47
42537464--42537578	41	2.8	40	82	7	131	26	17	23	33	1.96
42537438--42537578	44	3.3	43	79	8	137	25	16	25	32	1.96
42539326--42539400	33	2.3	33	80	11	84	21	6	6	65	1.40
42540211--42540253	19	2.4	17	77	11	50	25	9	4	60	1.47
42540589--42540636	21	2.2	22	77	3	53	31	35	12	20	1.90
42546788--42546848	32	2.0	30	84	12	79	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42546822--42546846	9	2.8	9	100	0	50	68	0	0	32	0.90
42547322--42547355	16	2.1	17	88	5	52	64	0	2	32	1.08
42547390--42547537	76	1.9	76	97	0	278	40	10	8	40	1.70
42547609--42547663	26	2.0	26	82	6	65	38	3	0	58	1.16
42547609--42547652	20	2.3	18	82	17	54	36	2	0	61	1.09
42547620--42547677	26	2.2	25	79	8	62	37	5	0	56	1.21
42549040--42549101	31	2.0	32	84	9	83	54	0	3	41	1.16
42551796--42551922	41	3.1	40	77	13	132	53	9	12	24	1.68
42551817--42551922	21	5.1	21	70	8	92	53	10	11	24	1.67
42551797--42551911	61	1.9	61	83	7	153	53	9	13	24	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170