genome.fa.s16.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  102  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31798593--31798851	34	7.5	33	72	15	172	45	20	1	31	1.62
31798573--31798849	71	4.0	68	71	19	173	45	20	2	31	1.63
31798563--31798720	79	2.0	77	84	9	203	46	21	2	29	1.64
31798759--31798814	25	2.2	25	87	0	76	44	23	1	30	1.63
31804773--31805002	43	5.4	41	77	11	212	26	19	20	33	1.96
31806605--31806648	20	2.2	20	84	8	54	31	4	9	54	1.52
31806805--31806834	13	2.3	13	100	0	60	73	0	0	26	0.84
31809376--31809435	29	2.0	31	83	6	79	26	25	23	25	2.00
31809732--31809892	54	3.0	53	85	3	214	29	23	14	32	1.95
31812167--31812351	79	2.3	81	84	7	236	24	22	27	25	2.00
31812168--31812351	40	4.6	40	83	9	216	24	22	27	25	2.00
31812220--31812384	79	2.1	79	84	6	210	26	21	27	25	1.99
31820200--31820384	79	2.3	81	84	7	236	24	22	27	25	2.00
31820201--31820384	40	4.6	40	83	9	216	24	22	27	25	2.00
31820253--31820417	79	2.1	79	84	6	210	26	21	27	25	1.99
31823590--31823631	20	2.1	20	90	0	66	47	11	11	28	1.76
31828974--31829346	187	2.0	187	91	2	606	20	29	24	26	1.99
31845038--31845062	13	1.9	13	100	0	50	32	4	24	40	1.73
31846153--31846311	43	3.7	43	80	7	189	25	18	25	30	1.98
31853841--31853887	22	2.1	22	92	0	76	55	2	12	29	1.49
31858062--31858320	122	2.1	122	78	7	283	28	27	16	27	1.97
31860700--31860742	20	2.2	20	86	0	59	46	4	0	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31861726--31861776	15	3.3	15	70	20	50	52	9	0	37	1.34
31861725--31861790	33	2.0	32	88	2	96	51	10	1	36	1.46
31879587--31879800	37	5.8	37	94	1	349	27	21	13	37	1.91
31887190--31887229	20	2.0	20	90	9	64	50	15	12	22	1.77
31904308--31904383	37	2.1	36	83	11	93	40	2	2	53	1.28
31905165--31905215	25	2.0	25	100	0	102	37	11	27	23	1.90
31916659--31916702	23	1.9	22	82	17	54	36	25	0	38	1.56
31916748--31916835	45	2.0	45	93	0	149	32	19	18	29	1.95
31916837--31917031	51	3.9	50	77	6	214	31	27	16	24	1.97
31916844--31917028	101	1.8	101	90	3	300	31	27	16	24	1.96
31917898--31917957	30	2.0	31	86	3	86	40	0	40	20	1.52
31918261--31918291	9	3.4	9	90	0	53	38	22	12	25	1.90
31919933--31920003	37	1.9	37	81	16	85	40	2	0	56	1.14
31920178--31920212	14	2.5	14	95	0	61	57	0	25	17	1.40
31923562--31923629	9	7.4	9	85	9	84	41	26	10	22	1.85
31927693--31927737	20	2.4	18	78	10	54	2	17	0	80	0.82
31935293--31935401	7	15.4	7	69	12	62	46	30	0	22	1.58
31935269--31935390	21	5.8	20	72	17	86	43	35	0	20	1.58
31935287--31935401	14	8.1	14	74	13	92	46	31	0	21	1.58
31935707--31935853	40	3.7	40	82	5	163	27	22	20	29	1.98
31939335--31939413	29	2.7	29	80	0	86	37	10	5	46	1.60
31939529--31939609	39	2.1	37	84	4	99	34	7	4	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31939650--31939723	34	2.1	35	80	7	80	35	8	2	54	1.44
31951083--31951112	2	15.0	2	100	0	60	50	50	0	0	1.00
31960544--31960950	69	5.9	69	81	0	375	38	21	18	21	1.93
31960542--31960940	138	2.9	137	82	1	447	38	21	18	21	1.93
31960544--31960950	207	2.0	207	79	1	440	38	21	18	21	1.93
31960481--31960981	138	3.7	138	78	4	376	38	21	18	20	1.93
31963293--31963366	36	2.1	36	86	0	103	43	12	18	25	1.85
31964599--31964693	45	2.1	45	90	0	154	26	20	24	29	1.99
31980722--31980802	25	3.2	25	84	3	101	19	32	13	34	1.91
31988411--31988492	42	1.9	43	90	2	130	28	9	12	50	1.71
31990024--31990073	22	2.2	22	85	3	64	54	2	0	44	1.11
31990032--31990070	15	2.7	15	88	4	53	58	2	0	38	1.12
31993372--31993422	13	4.1	12	76	14	50	1	9	3	84	0.83
31999343--31999538	103	1.9	104	90	2	313	29	25	23	21	1.99
32011173--32011220	25	1.9	25	83	8	62	41	12	20	25	1.87
32016105--32016300	82	2.4	81	87	4	268	27	13	25	34	1.93
32016105--32016300	41	4.8	40	85	8	234	27	13	25	34	1.93
32023465--32023682	41	5.3	41	86	1	269	26	12	25	35	1.92
32026075--32026138	25	2.6	25	73	11	69	51	20	6	21	1.69
32026049--32026375	23	14.0	23	70	5	172	44	16	11	26	1.82
32026039--32026367	70	4.7	70	89	3	457	45	16	11	27	1.81
32027104--32027175	28	2.6	28	88	0	99	29	25	12	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32033638--32033976	23	14.5	23	69	11	197	43	16	13	26	1.85
32033632--32033937	47	6.5	47	69	13	171	43	16	12	27	1.84
32033602--32033954	70	5.0	70	90	2	528	43	17	11	26	1.84
32034686--32034766	28	3.0	24	75	20	72	30	23	12	33	1.92
32034695--32034766	28	2.6	28	90	0	108	29	26	12	31	1.93
32037199--32037244	20	2.4	19	80	16	51	43	2	2	52	1.25
32039019--32039052	16	2.1	17	88	5	52	35	0	0	64	0.94
32040270--32040324	22	2.3	22	78	12	56	49	7	14	29	1.70
32050302--32050489	50	3.6	51	80	5	182	25	21	28	24	1.99
32053866--32053903	18	2.1	19	85	5	51	31	10	10	47	1.72
32054694--32054736	23	1.9	23	86	13	63	13	6	41	37	1.72
32059260--32059298	16	2.5	15	84	15	53	58	0	0	41	0.98
32059260--32059298	7	5.1	7	85	14	51	58	0	0	41	0.98
32059331--32059375	20	2.4	18	79	13	54	57	0	6	35	1.25
32059334--32059372	20	2.0	20	89	0	60	56	0	7	35	1.28
32061121--32061231	44	2.5	43	76	9	116	32	16	19	31	1.94
32073584--32073632	26	2.0	24	88	8	71	65	0	6	28	1.16
32073793--32073847	27	2.1	26	83	10	67	69	0	1	29	0.99
32073873--32073919	20	2.3	20	85	0	67	57	0	6	36	1.24
32085063--32085095	14	2.3	15	89	5	50	39	12	0	48	1.40
32087728--32087800	32	2.3	31	84	9	94	80	4	4	10	0.98
32087720--32087800	16	5.0	16	75	11	67	80	3	4	11	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32087723--32087804	26	3.1	25	81	13	85	80	3	3	12	0.97
32087723--32087804	5	15.6	5	76	13	67	80	3	3	12	0.97
32089514--32089591	26	3.0	26	78	9	97	66	2	5	25	1.25
32089518--32089621	46	2.3	43	83	9	109	67	2	4	25	1.24
32089519--32089593	17	4.4	17	74	12	64	65	2	4	28	1.24
32089517--32089624	51	2.1	52	81	11	134	67	2	4	25	1.23
32099477--32099571	40	2.4	40	87	0	136	48	7	20	24	1.74
32105324--32105365	20	2.2	20	86	4	59	45	21	14	19	1.85
32107657--32107711	23	2.3	25	84	9	78	10	7	12	69	1.37
32109314--32109363	10	4.8	10	80	9	55	36	0	2	62	1.07
32112016--32112131	25	4.6	25	82	0	133	31	22	19	25	1.98
32127226--32127259	16	2.2	15	89	5	50	44	0	0	55	0.99
32127570--32127607	19	2.0	19	100	0	76	10	47	15	26	1.78
32138164--32138189	8	3.2	8	100	0	52	42	23	0	34	1.54
32139142--32139172	12	2.6	12	94	0	53	38	0	3	58	1.15
32140158--32140206	20	2.5	19	76	3	53	42	8	8	40	1.64
32141123--32141166	20	2.2	20	88	8	63	59	6	18	15	1.58
32143399--32143451	22	2.4	22	84	6	72	37	15	28	18	1.91
32149695--32149754	24	2.5	24	83	2	66	38	20	26	15	1.91
32153183--32153553	104	3.6	104	90	3	559	30	30	19	19	1.97
32155852--32155878	14	1.9	14	100	0	54	14	25	22	37	1.93
32157663--32157714	17	3.1	17	88	0	77	50	3	9	36	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32157825--32157863	12	3.0	13	85	11	53	56	0	0	43	0.99
32158035--32158421	187	2.1	186	90	4	615	31	10	9	49	1.68
32158019--32158416	90	4.4	89	85	7	532	30	10	9	49	1.69
32177538--32177566	14	2.0	15	93	6	51	13	3	27	55	1.55
32178744--32178810	22	3.0	22	84	0	89	19	28	11	40	1.87
32178772--32178851	22	3.7	21	85	6	74	16	27	17	38	1.91
32178794--32178876	22	3.8	22	82	3	87	18	28	15	37	1.91
32179569--32179619	20	2.5	20	93	0	84	33	15	19	31	1.93
32180818--32180848	15	2.1	15	93	0	53	29	35	6	29	1.82
32184539--32184597	26	2.3	26	87	0	82	44	11	13	30	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170