genome.fa.s16.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  164  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48804665--48804700	17	2.1	17	94	0	63	58	5	13	22	1.56
48809114--48809216	27	3.8	27	87	7	147	20	21	35	22	1.96
48809930--48809973	3	15.3	3	81	9	56	2	34	0	63	1.07
48809926--48809974	14	3.6	14	86	10	66	2	34	0	63	1.06
48809930--48809973	20	2.2	20	91	0	70	2	34	0	63	1.07
48809937--48809985	14	3.3	15	80	13	57	2	36	0	61	1.08
48809958--48810259	149	2.0	152	96	3	567	26	22	21	29	1.99
48810751--48810880	27	4.8	27	92	1	199	19	21	36	22	1.95
48810942--48810985	18	2.3	20	80	7	56	63	2	34	0	1.07
48810938--48810991	22	2.5	22	76	8	58	64	1	31	1	1.14
48814180--48814359	89	2.0	90	97	1	344	28	24	22	25	1.99
48815604--48815645	16	2.7	15	85	7	57	57	2	2	38	1.25
48815682--48815763	38	2.2	38	95	0	146	40	2	3	53	1.32
48815906--48816249	49	7.1	49	85	5	434	53	13	1	31	1.47
48815903--48816250	144	2.4	145	87	2	504	53	13	1	32	1.47
48816108--48816247	27	5.6	27	78	16	129	54	13	1	30	1.48
48816291--48816373	19	4.2	19	75	13	78	54	13	1	31	1.47
48815904--48816364	22	20.0	20	66	25	106	53	13	1	31	1.46
48816286--48816371	20	4.2	21	78	13	81	56	12	1	29	1.43
48816695--48816760	27	2.4	27	92	0	114	12	37	22	27	1.90
48817111--48817158	24	1.9	26	87	8	73	45	0	0	54	0.99
48821803--48821828	13	2.0	13	100	0	52	53	7	7	30	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48826899--48826924	11	2.4	11	100	0	52	30	0	0	69	0.89
48826872--48826928	24	2.3	26	84	6	73	26	1	0	71	0.95
48832611--48832676	33	2.0	33	88	5	98	42	24	10	22	1.85
48833951--48833980	15	1.9	16	93	6	53	63	0	0	36	0.95
48837586--48837611	11	2.4	11	100	0	52	50	7	42	0	1.31
48838268--48838304	6	6.2	6	87	0	56	37	0	10	51	1.37
48838268--48838304	18	2.1	18	94	0	65	37	0	10	51	1.37
48838459--48838507	23	2.0	26	88	11	77	48	0	20	30	1.50
48838625--48838758	39	3.4	38	72	12	103	22	20	26	29	1.99
48845514--48845544	13	2.4	13	94	0	53	45	22	9	22	1.81
48856297--48856327	16	1.9	16	100	0	62	32	3	0	64	1.09
48856300--48856339	16	2.4	16	87	8	53	40	5	0	55	1.22
48857688--48857892	10	21.3	9	70	17	76	33	1	4	60	1.25
48857679--48857877	19	10.4	18	66	16	62	33	1	4	61	1.23
48857766--48857884	48	2.5	47	81	10	134	36	0	2	60	1.10
48857853--48857931	18	4.2	18	70	20	54	27	3	1	67	1.16
48866344--48866369	6	4.3	6	100	0	52	34	0	0	65	0.93
48875064--48875128	32	2.0	32	100	0	130	24	24	13	36	1.92
48876700--48876765	32	2.1	32	94	0	114	28	19	19	31	1.97
48878088--48878131	20	2.2	20	88	8	63	56	11	20	11	1.64
48878406--48880255	76	24.1	75	78	10	1533	28	16	20	34	1.95
48878405--48880255	154	12.1	153	83	6	2067	28	16	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48880381--48880417	16	2.2	17	90	9	67	54	13	5	27	1.61
48880423--48880480	30	1.9	30	96	0	107	55	10	10	24	1.65
48881611--48881655	13	3.5	13	84	0	54	60	2	2	35	1.22
48881680--48881733	28	1.9	29	82	14	69	46	3	3	46	1.38
48885674--48885712	17	2.3	17	86	0	51	56	0	2	41	1.13
48886397--48886441	22	2.0	23	95	4	83	26	22	4	46	1.70
48890069--48890094	13	2.0	13	100	0	52	53	0	0	46	1.00
48899640--48899680	17	2.4	17	87	0	55	60	2	7	29	1.36
48899674--48899711	19	2.0	20	89	5	60	57	0	0	42	0.98
48899674--48899713	20	2.0	20	85	9	55	57	0	0	42	0.98
48899934--48899986	23	2.3	23	83	6	63	41	1	3	52	1.30
48899950--48899994	23	2.0	23	81	0	54	37	2	4	55	1.32
48903794--48903819	5	5.2	5	100	0	52	42	0	0	57	0.98
48911337--48911385	25	2.0	25	95	0	89	18	16	22	42	1.88
48911503--48911655	42	3.7	41	80	3	171	26	22	20	30	1.98
48912043--48912082	21	1.9	21	84	0	53	2	42	17	37	1.63
48911978--48912137	87	1.8	87	87	0	230	14	28	16	41	1.87
48917557--48918174	9	72.4	9	65	17	189	35	2	18	44	1.61
48917562--48918096	25	21.0	25	71	11	277	35	2	17	45	1.60
48917570--48918034	16	28.0	16	64	18	132	35	2	17	45	1.60
48917690--48917809	59	2.0	59	82	6	145	36	1	16	45	1.58
48917743--48918096	154	2.3	152	96	1	638	36	1	16	44	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48917927--48918004	41	1.9	41	94	0	138	39	2	15	42	1.61
48917886--48918018	34	4.0	34	71	14	105	37	1	16	44	1.57
48918086--48918143	22	2.6	22	86	5	73	32	0	24	43	1.55
48917840--48918129	25	11.0	28	69	17	97	34	1	19	45	1.57
48918108--48918168	22	2.7	23	84	5	70	36	1	21	40	1.63
48918202--48919441	365	3.4	366	97	0	2302	43	8	8	39	1.66
48920240--48920264	10	2.5	10	100	0	50	44	20	8	28	1.79
48920206--48920309	45	2.3	44	85	11	131	43	17	6	32	1.75
48921387--48921675	94	3.1	92	90	3	456	43	5	4	46	1.46
48921675--48921737	16	3.9	16	78	12	74	49	9	0	41	1.35
48922543--48922573	15	2.1	15	93	0	53	32	3	0	64	1.09
48922532--48922573	21	2.0	22	90	4	68	35	2	0	61	1.09
48923638--48923700	3	20.7	3	75	15	58	33	1	3	61	1.21
48923652--48923697	17	2.6	18	86	10	60	32	0	2	65	1.05
48923627--48923700	11	6.3	12	75	20	50	33	2	2	60	1.25
48923627--48923700	14	5.3	14	78	16	66	33	2	2	60	1.25
48924827--48924864	14	2.7	14	88	8	51	52	26	0	21	1.47
48924860--48924888	14	2.1	14	100	0	58	34	48	6	10	1.64
48924954--48925007	22	2.5	22	87	3	74	51	25	3	18	1.62
48928757--48928805	25	2.0	25	88	8	73	51	2	0	46	1.12
48929261--48929525	130	2.1	125	89	8	401	35	2	22	40	1.68
48930130--48930176	21	2.2	21	85	7	60	10	19	34	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48930418--48930460	18	2.4	18	92	0	68	44	6	25	23	1.78
48934533--48934607	3	24.0	3	84	10	89	29	4	1	65	1.19
48934737--48934774	16	2.4	16	90	0	58	44	5	0	50	1.24
48934752--48934777	12	2.2	12	100	0	52	42	0	0	57	0.98
48936499--48936539	15	2.9	14	77	22	50	63	0	2	34	1.08
48938443--48938476	5	6.8	5	96	0	50	32	0	0	67	0.91
48939136--48939175	13	3.1	13	77	0	53	32	5	27	35	1.79
48953407--48953585	96	1.9	96	90	1	288	37	10	15	36	1.81
48956336--48956373	19	2.0	19	90	10	60	68	2	2	26	1.16
48956501--48956542	20	2.1	20	86	0	57	47	0	7	45	1.30
48959415--48959587	72	2.4	72	81	1	195	26	23	23	27	2.00
48959525--48959747	113	2.0	114	80	4	254	23	21	27	26	1.99
48960394--48960443	20	2.5	20	84	9	66	14	0	38	48	1.44
48960573--48960654	7	12.0	6	75	16	56	21	2	29	46	1.64
48960573--48960656	14	6.1	14	74	12	66	21	3	29	45	1.69
48960576--48960656	35	2.3	34	80	17	103	22	3	28	45	1.69
48960575--48960654	21	3.8	20	73	14	63	22	2	27	47	1.64
48961104--48961342	115	2.1	115	93	0	406	29	18	20	31	1.96
48961853--48962192	173	2.0	169	88	5	506	23	39	10	27	1.86
48963805--48964168	9	40.6	9	68	16	186	44	17	1	35	1.60
48963868--48964168	25	12.6	25	67	19	119	43	17	1	37	1.58
48963875--48964168	16	16.4	18	70	17	125	43	17	1	37	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48964048--48964100	19	2.8	19	85	2	72	47	18	1	32	1.60
48963932--48964102	52	3.2	49	73	21	150	43	18	1	36	1.61
48969656--48969699	21	2.1	21	82	0	52	36	20	40	2	1.65
48969665--48969705	21	2.0	21	90	0	64	36	19	39	4	1.73
48969712--48969745	12	2.8	12	90	0	50	44	11	41	2	1.56
48970185--48970371	43	4.4	42	87	6	234	27	24	18	29	1.98
48970184--48970371	85	2.2	87	83	7	242	28	23	18	29	1.98
48976128--48976304	96	1.9	95	86	2	257	38	9	14	37	1.78
48978943--48979103	55	3.0	55	86	3	220	50	16	9	23	1.74
48980168--48980319	35	4.3	37	76	12	117	44	11	11	33	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170