genome.fa.s16.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  118  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36196676--36196753	24	3.5	24	67	16	76	42	12	28	16	1.85
36196672--36196756	43	2.0	43	97	0	161	43	11	29	15	1.82
36196697--36196774	24	3.5	24	72	19	78	42	10	33	14	1.79
36203211--36203262	22	2.2	25	80	16	67	51	0	1	46	1.12
36203227--36203265	11	3.4	11	80	13	51	51	0	2	46	1.14
36203245--36203280	17	2.1	18	89	5	56	47	0	0	52	1.00
36217937--36217979	3	14.3	3	100	0	86	32	0	0	67	0.91
36218614--36218750	54	2.5	54	83	7	161	33	14	22	29	1.94
36228424--36228453	15	2.0	15	100	0	60	26	13	26	33	1.93
36228742--36228829	30	2.9	30	81	8	106	62	0	2	35	1.08
36228761--36228819	11	5.6	11	75	24	65	59	0	1	38	1.08
36228760--36228827	30	2.3	29	90	9	111	61	0	1	36	1.05
36231723--36231766	21	2.1	21	100	0	88	36	9	9	45	1.68
36232195--36232269	40	1.9	39	94	5	134	26	12	8	53	1.65
36232357--36232526	56	3.1	56	81	11	183	35	14	10	40	1.79
36232829--36232897	18	3.8	18	80	0	75	15	39	2	42	1.63
36236703--36236736	11	3.1	11	82	0	50	76	5	11	5	1.14
36236863--36237558	132	5.3	132	86	4	928	28	19	25	26	1.99
36236863--36237578	254	2.8	256	88	3	999	28	19	25	26	1.99
36240180--36240218	16	2.4	16	95	0	69	38	0	2	58	1.12
36241230--36241365	53	2.6	53	87	0	200	18	19	30	32	1.95
36242374--36242432	28	2.1	28	100	0	118	25	16	23	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36247210--36247256	21	2.2	22	92	3	78	21	38	19	21	1.94
36252582--36252669	42	2.1	42	100	0	176	37	9	12	40	1.75
36259212--36259275	30	2.1	31	83	11	80	37	0	1	60	1.06
36259223--36259291	21	3.5	20	78	11	63	39	0	1	59	1.06
36259270--36259311	19	2.2	19	86	4	57	42	0	2	54	1.13
36259233--36259296	29	2.2	28	75	8	65	37	0	1	60	1.06
36259240--36259310	30	2.5	27	74	14	70	38	0	2	59	1.12
36259281--36259319	19	2.0	19	85	5	51	38	2	7	51	1.44
36262313--36262422	57	1.9	57	87	3	159	16	36	25	21	1.94
36265304--36265400	48	2.0	48	100	0	194	27	14	18	39	1.90
36265379--36266352	69	14.2	69	79	1	860	19	20	19	41	1.91
36279107--36279333	33	6.5	33	66	23	117	33	27	19	19	1.96
36279133--36279185	27	2.0	27	96	3	99	28	33	22	15	1.94
36279058--36279258	102	2.0	101	89	1	303	31	28	20	19	1.97
36279159--36279338	75	2.4	75	87	0	270	31	27	20	21	1.97
36279556--36279613	30	1.9	30	85	0	80	31	18	6	43	1.77
36286376--36286577	102	2.0	102	97	0	377	30	28	21	19	1.98
36286480--36286616	42	3.5	42	77	17	175	31	27	18	21	1.97
36286341--36286681	177	1.9	177	95	0	610	30	28	20	20	1.98
36286478--36286653	75	2.3	75	94	0	298	32	27	18	21	1.96
36316322--36316379	30	2.0	29	83	10	73	18	8	8	63	1.48
36316994--36317050	21	2.5	22	72	10	53	5	29	0	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36316993--36317050	16	3.8	16	78	15	61	5	29	0	65	1.14
36317007--36317052	20	2.2	22	88	7	69	6	28	0	65	1.17
36317065--36317096	8	4.0	8	91	0	55	59	0	0	40	0.97
36317062--36317097	16	2.3	16	95	4	65	58	0	0	41	0.98
36317069--36317104	16	2.2	16	90	0	54	61	2	0	36	1.11
36320661--36320718	30	2.0	29	86	6	82	27	3	1	67	1.17
36320672--36320728	23	2.6	22	81	15	73	31	1	1	64	1.13
36325086--36325143	29	2.0	29	86	6	82	67	1	3	27	1.17
36327895--36327971	19	4.1	19	94	3	129	37	9	16	36	1.81
36334391--36335294	44	20.5	44	76	6	794	27	15	25	30	1.96
36334391--36335294	132	6.8	132	90	1	1210	27	15	25	30	1.96
36335576--36335691	44	2.7	43	81	6	126	30	20	19	29	1.97
36336111--36336185	19	3.8	19	89	6	114	36	9	16	38	1.80
36336112--36336174	21	3.1	21	93	4	103	36	9	14	39	1.78
36336710--36336781	23	3.1	23	78	4	65	22	4	1	72	1.10
36336729--36336785	21	2.8	19	77	12	60	22	3	1	71	1.10
36336841--36336875	11	3.1	11	91	4	52	22	0	0	77	0.78
36336841--36336875	17	2.0	18	88	5	54	22	0	0	77	0.78
36336841--36336893	10	5.0	10	75	11	52	24	1	1	71	1.06
36336842--36336877	12	3.1	12	92	4	56	25	0	0	75	0.81
36338960--36339021	16	4.1	16	72	19	51	66	1	29	3	1.17
36344673--36344711	14	2.7	15	84	8	53	53	0	17	28	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36344768--36344839	28	2.6	28	90	0	108	31	12	26	29	1.93
36344768--36344848	28	3.0	24	76	16	63	33	12	23	30	1.92
36345584--36345959	70	5.3	70	90	2	522	27	12	18	42	1.85
36345603--36345957	47	7.5	47	69	16	141	27	12	18	42	1.85
36345569--36345892	23	13.9	22	71	12	191	26	12	17	42	1.85
36345601--36345971	23	15.8	23	71	10	180	27	12	18	41	1.86
36346447--36346760	27	11.5	26	83	6	349	43	20	16	19	1.88
36346446--36346760	55	5.8	55	86	1	391	44	20	16	19	1.87
36346447--36346761	82	3.9	82	84	4	377	43	20	16	19	1.88
36350722--36350773	21	2.4	22	83	3	61	36	19	7	36	1.80
36363870--36364054	79	2.3	82	83	7	229	24	27	22	24	2.00
36363851--36364054	40	5.1	40	81	8	229	24	27	22	25	2.00
36374328--36374511	79	2.3	81	83	8	227	25	27	22	24	2.00
36374309--36374511	39	5.1	40	81	9	229	24	27	22	25	2.00
36376923--36376968	9	5.3	9	89	10	78	39	0	19	41	1.52
36376923--36376968	17	2.7	18	90	10	78	39	0	19	41	1.52
36386405--36386464	17	3.1	21	68	22	67	50	15	18	16	1.79
36387823--36387930	20	5.4	20	75	4	101	35	21	31	12	1.90
36387841--36387958	60	2.0	59	85	8	159	33	18	32	15	1.92
36387827--36387943	20	5.8	20	70	16	73	35	19	29	14	1.92
36389484--36389519	18	1.9	19	94	5	65	44	11	22	22	1.84
36390572--36390618	24	1.9	24	86	4	67	36	0	38	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36391734--36392011	81	3.5	81	85	4	384	42	20	17	19	1.89
36391734--36392011	27	10.4	27	84	3	348	42	20	17	19	1.89
36394137--36394258	39	3.1	39	96	3	217	37	4	13	44	1.65
36398289--36398380	44	2.1	44	87	4	132	22	23	19	33	1.97
36398303--36398778	44	11.0	44	83	4	565	25	26	18	30	1.98
36412194--36412237	20	2.2	20	84	8	54	56	4	20	18	1.58
36416169--36416209	20	2.0	20	100	0	82	41	4	14	39	1.67
36422553--36422611	28	2.1	28	83	0	73	30	22	25	22	1.99
36422818--36423084	32	8.4	32	80	4	236	36	22	21	19	1.95
36422838--36423084	96	2.6	96	86	3	329	36	22	21	19	1.95
36423128--36423191	27	2.4	27	85	12	80	31	23	25	20	1.98
36423256--36423314	24	2.5	23	83	8	82	47	25	6	20	1.74
36423284--36423349	33	2.0	33	100	0	132	48	24	6	21	1.72
36423411--36423517	27	3.9	27	90	1	160	24	19	20	35	1.96
36423409--36423511	54	1.9	54	93	0	179	24	21	18	35	1.95
36431685--36431714	15	2.0	15	100	0	60	26	13	6	53	1.64
36431862--36431913	26	2.0	27	85	14	74	7	9	5	76	1.14
36433369--36433642	138	2.0	138	81	2	327	21	21	25	30	1.98
36439443--36439643	42	4.8	42	82	6	230	45	15	21	16	1.85
36439443--36439633	21	9.1	22	73	11	159	45	15	21	17	1.86
36439443--36439643	84	2.4	84	89	2	298	45	15	21	16	1.85
36442597--36442631	16	2.1	17	89	5	54	37	25	0	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36447260--36447396	68	2.0	68	92	2	231	28	18	23	29	1.98
36453094--36453129	19	1.9	19	88	5	56	36	2	19	41	1.66
36453937--36454003	24	2.7	25	75	13	75	19	25	17	37	1.94
36459350--36459423	32	2.3	32	92	0	121	44	6	13	35	1.70
36460052--36460082	14	2.2	14	94	0	53	38	19	19	22	1.93
36477093--36477150	29	2.0	29	93	0	98	31	17	24	27	1.97
36477548--36477621	32	2.3	32	86	4	96	22	14	35	27	1.94
36484513--36484545	14	2.3	15	85	15	52	75	0	0	24	0.80
36484517--36484549	7	5.0	7	92	7	52	72	0	0	27	0.85
36484572--36484618	23	2.0	23	84	8	60	63	0	0	36	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170